RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 CROCCQ5TZA2 2017 aa14.58□□□□□ -0.08
CUX1-215ENST00000556210 KDELR3O43731 214 aa14.57□□□□□ -0.08
CUX1-215ENST00000556210 PAPSS2O95340 614 aaPredicted RBP14.57□□□□□ -0.08
CUX1-215ENST00000556210 SEC24AO95486 1093 aa14.57□□□□□ -0.08
CUX1-215ENST00000556210 SERPINB1P30740 379 aa14.57□□□□□ -0.08
CUX1-215ENST00000556210 SPAM1P38567 509 aa14.57□□□□□ -0.08
CUX1-215ENST00000556210 CYP27C1Q4G0S4 372 aa14.57□□□□□ -0.08
CUX1-215ENST00000556210 SETMARQ53H47 684 aaPredicted RBP14.57□□□□□ -0.08
CUX1-215ENST00000556210 BROXQ5VW32 411 aa14.57□□□□□ -0.08
CUX1-215ENST00000556210 ZC3H7AQ8IWR0 971 aaKnown RBP14.57□□□□□ -0.08
CUX1-215ENST00000556210 CMTR2Q8IYT2 770 aaKnown RBP14.57□□□□□ -0.08
CUX1-215ENST00000556210 ZBTB8BQ8NAP8 495 aaPredicted RBP14.57□□□□□ -0.08
CUX1-215ENST00000556210 ITCHQ96J02 903 aa14.57□□□□□ -0.08
CUX1-215ENST00000556210 ATAD3AQ9NVI7 634 aa14.57□□□□□ -0.08
CUX1-215ENST00000556210 PRKAB1Q9Y478 270 aa14.57□□□□□ -0.08
CUX1-215ENST00000556210 TRAV19A0A0A6YYK7 116 aa14.57□□□□□ -0.08
CUX1-215ENST00000556210 C5orf58C9J3I9 102 aa14.57□□□□□ -0.08
CUX1-215ENST00000556210 PCDH8O95206 1070 aa14.57□□□□□ -0.08
CUX1-215ENST00000556210 ZNF182P17025 639 aaPredicted RBP14.57□□□□□ -0.08
CUX1-215ENST00000556210 SLC6A2P23975 617 aa14.57□□□□□ -0.08
CUX1-215ENST00000556210 PRKAG1P54619 331 aa14.57□□□□□ -0.08
CUX1-215ENST00000556210 MBTPS1Q14703 1052 aa14.57□□□□□ -0.08
CUX1-215ENST00000556210 LRRC66Q68CR7 880 aa14.57□□□□□ -0.08
CUX1-215ENST00000556210 SH3GL1Q99961 368 aa14.57□□□□□ -0.08
CUX1-215ENST00000556210 DERL2Q9GZP9 239 aa14.57□□□□□ -0.08
CUX1-215ENST00000556210 IMPAD1Q9NX62 359 aa14.57□□□□□ -0.08
CUX1-215ENST00000556210 AASSQ9UDR5 926 aa14.57□□□□□ -0.08
CUX1-215ENST00000556210 SAMHD1Q9Y3Z3 626 aaKnown RBP14.57□□□□□ -0.08
CUX1-215ENST00000556210 ELOVL7A1L3X0 281 aa14.57□□□□□ -0.08
CUX1-215ENST00000556210 OPN1SWP03999 348 aa14.57□□□□□ -0.08
CUX1-215ENST00000556210 C8AP07357 584 aa14.57□□□□□ -0.08
CUX1-215ENST00000556210 POLR2EP19388 210 aaKnown RBP14.57□□□□□ -0.08
CUX1-215ENST00000556210 RFX3P48380 749 aa14.57□□□□□ -0.08
CUX1-215ENST00000556210 OR4F3Q6IEY1 312 aa14.57□□□□□ -0.08
CUX1-215ENST00000556210 RFLNAQ6ZTI6 216 aa14.57□□□□□ -0.08
CUX1-215ENST00000556210 Q6ZVL8 140 aa14.57□□□□□ -0.08
CUX1-215ENST00000556210 TMPRSS11BQ86T26 416 aa14.57□□□□□ -0.08
CUX1-215ENST00000556210 TMBIM1Q969X1 311 aa14.57□□□□□ -0.08
CUX1-215ENST00000556210 SLC39A13Q96H72 371 aa14.57□□□□□ -0.08
CUX1-215ENST00000556210 PLEKHA8Q96JA3 519 aa14.57□□□□□ -0.08
CUX1-215ENST00000556210 SCN3BQ9NY72 215 aa14.57□□□□□ -0.08
CUX1-215ENST00000556210 ASB1Q9Y576 335 aa14.57□□□□□ -0.08
CUX1-215ENST00000556210 ARID1BQ8NFD5 2236 aaPredicted RBP14.57□□□□□ -0.08
CUX1-215ENST00000556210 LOC100506127A0A0U1RQW1 187 aa14.57□□□□□ -0.08
CUX1-215ENST00000556210 SERPINA1P01009 418 aa14.57□□□□□ -0.08
CUX1-215ENST00000556210 STATHP02808 62 aa14.57□□□□□ -0.08
CUX1-215ENST00000556210 HNF1BP35680 557 aa14.57□□□□□ -0.08
CUX1-215ENST00000556210 NFKB2Q00653 900 aa14.57□□□□□ -0.08
CUX1-215ENST00000556210 LARP4Q71RC2 724 aaKnown RBP eCLIP14.57□□□□□ -0.089e-6■■■■□ 21.5
CUX1-215ENST00000556210 RD3Q7Z3Z2 195 aa14.57□□□□□ -0.08
CUX1-215ENST00000556210 SMOXQ9NWM0 555 aa14.57□□□□□ -0.08
CUX1-215ENST00000556210 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP14.57□□□□□ -0.084e-11■■■■■ 28.6
CUX1-215ENST00000556210 A0A0G2JN53 185 aa14.56□□□□□ -0.08
CUX1-215ENST00000556210 PRSS51A0A1B0GVH4 220 aa14.56□□□□□ -0.08
CUX1-215ENST00000556210 SH3PXD2BA1X283 911 aa14.56□□□□□ -0.08
CUX1-215ENST00000556210 TRIM43BA6NCK2 446 aa14.56□□□□□ -0.08
CUX1-215ENST00000556210 KPNA5O15131 536 aa14.56□□□□□ -0.08
CUX1-215ENST00000556210 CLDN9O95484 217 aa14.56□□□□□ -0.08
CUX1-215ENST00000556210 JAK1P23458 1154 aa14.56□□□□□ -0.08
CUX1-215ENST00000556210 RPL34P49207 117 aaKnown RBP14.56□□□□□ -0.08
CUX1-215ENST00000556210 TRAP1Q12931 704 aaKnown RBP14.56□□□□□ -0.08
CUX1-215ENST00000556210 FUNDC1Q8IVP5 155 aa14.56□□□□□ -0.08
CUX1-215ENST00000556210 TRPV3Q8NET8 790 aa14.56□□□□□ -0.08
CUX1-215ENST00000556210 REXO5Q96IC2 774 aaKnown RBP14.56□□□□□ -0.08
CUX1-215ENST00000556210 PADI4Q9UM07 663 aa14.56□□□□□ -0.08
CUX1-215ENST00000556210 CFAP20Q9Y6A4 193 aaKnown RBP14.56□□□□□ -0.08
CUX1-215ENST00000556210 EPN2O95208 641 aa14.56□□□□□ -0.08
CUX1-215ENST00000556210 PREPP48147 710 aa14.56□□□□□ -0.08
CUX1-215ENST00000556210 TRPC1P48995 793 aa14.56□□□□□ -0.08
CUX1-215ENST00000556210 TUBA4AP68366 448 aa14.56□□□□□ -0.08
CUX1-215ENST00000556210 LRP8Q14114 963 aa14.56□□□□□ -0.08
CUX1-215ENST00000556210 CARTPTQ16568 116 aa14.56□□□□□ -0.08
CUX1-215ENST00000556210 PTCHD3Q3KNS1 767 aa14.56□□□□□ -0.08
CUX1-215ENST00000556210 ERMP1Q7Z2K6 904 aa14.56□□□□□ -0.08
CUX1-215ENST00000556210 UBXN10Q96LJ8 280 aa14.56□□□□□ -0.08
CUX1-215ENST00000556210 MUS81Q96NY9 551 aa14.56□□□□□ -0.08
CUX1-215ENST00000556210 LRRC3Q9BY71 257 aa14.56□□□□□ -0.08
CUX1-215ENST00000556210 MIEF1Q9NQG6 463 aa14.56□□□□□ -0.08
CUX1-215ENST00000556210 SNX6Q9UNH7 406 aa14.56□□□□□ -0.08
CUX1-215ENST00000556210 FAM20BO75063 409 aa14.56□□□□□ -0.08
CUX1-215ENST00000556210 ALOX15P16050 662 aaPredicted RBP14.56□□□□□ -0.08
CUX1-215ENST00000556210 HID1Q8IV36 788 aa14.56□□□□□ -0.08
CUX1-215ENST00000556210 MRM3Q9HC36 420 aaKnown RBP14.56□□□□□ -0.08
CUX1-215ENST00000556210 KIAA1522Q9P206 1035 aaPredicted RBP14.56□□□□□ -0.08
CUX1-215ENST00000556210 SLC10A3P09131 477 aa14.55□□□□□ -0.08
CUX1-215ENST00000556210 HOXD9P28356 352 aaPredicted RBP14.55□□□□□ -0.08
CUX1-215ENST00000556210 ZXDBP98169 803 aa14.55□□□□□ -0.08
CUX1-215ENST00000556210 RAET1GQ6H3X3 334 aa14.55□□□□□ -0.08
CUX1-215ENST00000556210 PPP1R14BQ96C90 147 aa14.55□□□□□ -0.08
CUX1-215ENST00000556210 IFRD1O00458 451 aaPredicted RBP14.55□□□□□ -0.08
CUX1-215ENST00000556210 MMP2P08253 660 aa14.55□□□□□ -0.08
CUX1-215ENST00000556210 THRBP10828 461 aa14.55□□□□□ -0.08
CUX1-215ENST00000556210 CTSOP43234 321 aaPredicted RBP14.55□□□□□ -0.08
CUX1-215ENST00000556210 MAD2L1Q13257 205 aaPredicted RBP14.55□□□□□ -0.08
CUX1-215ENST00000556210 RGL4Q8IZJ4 473 aa14.55□□□□□ -0.08
CUX1-215ENST00000556210 ARL10Q8N8L6 244 aa14.55□□□□□ -0.08
CUX1-215ENST00000556210 HMG20AQ9NP66 347 aa14.55□□□□□ -0.08
CUX1-215ENST00000556210 WDR70Q9NW82 654 aa14.55□□□□□ -0.08
CUX1-215ENST00000556210 MAP1BP46821 2468 aaKnown RBP14.55□□□□□ -0.08
CUX1-215ENST00000556210 TRIM24O15164 1050 aa14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms