RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 ITGA11Q9UKX5 1188 aa4.83□□□□□ -1.64
SCFD1-209ENST00000553280 LINC01553A4QN01 128 aa4.82□□□□□ -1.64
SCFD1-209ENST00000553280 FAM90A10PA6NDY2 464 aa4.82□□□□□ -1.64
SCFD1-209ENST00000553280 TMEM178BH3BS89 294 aa4.82□□□□□ -1.64
SCFD1-209ENST00000553280 SLC33A1O00400 549 aaPredicted RBP4.82□□□□□ -1.64
SCFD1-209ENST00000553280 KINO60870 393 aaKnown RBP4.82□□□□□ -1.64
SCFD1-209ENST00000553280 KCNJ13O60928 360 aa4.82□□□□□ -1.64
SCFD1-209ENST00000553280 ACSL3O95573 720 aa4.82□□□□□ -1.64
SCFD1-209ENST00000553280 SNRNP70P08621 437 aaKnown RBP4.82□□□□□ -1.64
SCFD1-209ENST00000553280 HOXC6P09630 235 aa4.82□□□□□ -1.64
SCFD1-209ENST00000553280 TMPOP42166 694 aaKnown RBP4.82□□□□□ -1.64
SCFD1-209ENST00000553280 MAPK12P53778 367 aa4.82□□□□□ -1.64
SCFD1-209ENST00000553280 UBASH3AP57075 661 aa4.82□□□□□ -1.64
SCFD1-209ENST00000553280 STX1BP61266 288 aa4.82□□□□□ -1.64
SCFD1-209ENST00000553280 TNK1Q13470 666 aa4.82□□□□□ -1.64
SCFD1-209ENST00000553280 KLF9Q13886 244 aaPredicted RBP4.82□□□□□ -1.64
SCFD1-209ENST00000553280 RCN2Q14257 317 aa4.82□□□□□ -1.64
SCFD1-209ENST00000553280 ZNF234Q14588 700 aa4.82□□□□□ -1.64
SCFD1-209ENST00000553280 CALCRLQ16602 461 aa4.82□□□□□ -1.64
SCFD1-209ENST00000553280 FAM174BQ3ZCQ3 159 aa4.82□□□□□ -1.64
SCFD1-209ENST00000553280 SETMARQ53H47 684 aaPredicted RBP4.82□□□□□ -1.64
SCFD1-209ENST00000553280 SPOUT1Q5T280 376 aaKnown RBP4.82□□□□□ -1.64
SCFD1-209ENST00000553280 KLC3Q6P597 504 aa4.82□□□□□ -1.64
SCFD1-209ENST00000553280 ALKBH5Q6P6C2 394 aaKnown RBP4.82□□□□□ -1.64
SCFD1-209ENST00000553280 ENPP7Q6UWV6 458 aa4.82□□□□□ -1.64
SCFD1-209ENST00000553280 TMPRSS12Q86WS5 348 aa4.82□□□□□ -1.64
SCFD1-209ENST00000553280 C4orf19Q8IY42 314 aa4.82□□□□□ -1.64
SCFD1-209ENST00000553280 GBGT1Q8N5D6 347 aa4.82□□□□□ -1.64
SCFD1-209ENST00000553280 SMG7Q92540 1137 aaKnown RBP4.82□□□□□ -1.64
SCFD1-209ENST00000553280 DAZLQ92904 295 aaKnown RBP4.82□□□□□ -1.64
SCFD1-209ENST00000553280 ST6GALNAC6Q969X2 333 aa4.82□□□□□ -1.64
SCFD1-209ENST00000553280 PHF21AQ96BD5 680 aa4.82□□□□□ -1.64
SCFD1-209ENST00000553280 NAF1Q96HR8 494 aaKnown RBP4.82□□□□□ -1.64
SCFD1-209ENST00000553280 CDHR1Q96JP9 859 aa4.82□□□□□ -1.64
SCFD1-209ENST00000553280 OR1F2PQ96R84 312 aa4.82□□□□□ -1.64
SCFD1-209ENST00000553280 GTPBP2Q9BX10 602 aaKnown RBP4.82□□□□□ -1.64
SCFD1-209ENST00000553280 CDH20Q9HBT6 801 aa4.82□□□□□ -1.64
SCFD1-209ENST00000553280 Q9N2K0 584 aa4.82□□□□□ -1.64
SCFD1-209ENST00000553280 MIOSQ9NXC5 875 aa4.82□□□□□ -1.64
SCFD1-209ENST00000553280 CNIH4Q9P003 139 aa4.82□□□□□ -1.64
SCFD1-209ENST00000553280 ZCWPW2A0A1B0GU75 182 aa4.81□□□□□ -1.64
SCFD1-209ENST00000553280 PRR32B1ATL7 298 aa4.81□□□□□ -1.64
SCFD1-209ENST00000553280 DDX39AO00148 427 aaKnown RBP4.81□□□□□ -1.64
SCFD1-209ENST00000553280 RTN2O75298 545 aa4.81□□□□□ -1.64
SCFD1-209ENST00000553280 SLC22A3O75751 556 aa4.81□□□□□ -1.64
SCFD1-209ENST00000553280 KDM4BO94953 1096 aa4.81□□□□□ -1.64
SCFD1-209ENST00000553280 RLN1P04808 185 aa4.81□□□□□ -1.64
SCFD1-209ENST00000553280 THEGLP0DJG4 465 aa4.81□□□□□ -1.64
SCFD1-209ENST00000553280 MYOD1P15172 320 aa4.81□□□□□ -1.64
SCFD1-209ENST00000553280 GM2AP17900 193 aa4.81□□□□□ -1.64
SCFD1-209ENST00000553280 CASP3P42574 277 aa4.81□□□□□ -1.64
SCFD1-209ENST00000553280 KCNJ1P48048 391 aa4.81□□□□□ -1.64
SCFD1-209ENST00000553280 KCNJ4P48050 445 aa4.81□□□□□ -1.64
SCFD1-209ENST00000553280 PLCD1P51178 756 aa4.81□□□□□ -1.64
SCFD1-209ENST00000553280 PGGT1BP53609 377 aa4.81□□□□□ -1.64
SCFD1-209ENST00000553280 SNU13P55769 128 aaKnown RBP4.81□□□□□ -1.64
SCFD1-209ENST00000553280 KRTAP10-11P60412 298 aa4.81□□□□□ -1.64
SCFD1-209ENST00000553280 DLK1P80370 383 aa4.81□□□□□ -1.64
SCFD1-209ENST00000553280 ETFDHQ16134 617 aa4.81□□□□□ -1.64
SCFD1-209ENST00000553280 KBTBD12Q3ZCT8 623 aa4.81□□□□□ -1.64
SCFD1-209ENST00000553280 MDH1BQ5I0G3 518 aa4.81□□□□□ -1.64
SCFD1-209ENST00000553280 TATDN1Q6P1N9 297 aa4.81□□□□□ -1.64
SCFD1-209ENST00000553280 NOTUMQ6P988 496 aa4.81□□□□□ -1.64
SCFD1-209ENST00000553280 ZNF449Q6P9G9 518 aa4.81□□□□□ -1.64
SCFD1-209ENST00000553280 LINGO4Q6UY18 593 aa4.81□□□□□ -1.64
SCFD1-209ENST00000553280 ZNF517Q6ZMY9 492 aaPredicted RBP4.81□□□□□ -1.64
SCFD1-209ENST00000553280 TMEM182Q6ZP80 229 aaPredicted RBP4.81□□□□□ -1.64
SCFD1-209ENST00000553280 TECPR1Q7Z6L1 1165 aa4.81□□□□□ -1.64
SCFD1-209ENST00000553280 COMMD2Q86X83 199 aa4.81□□□□□ -1.64
SCFD1-209ENST00000553280 CLIP4Q8N3C7 705 aa4.81□□□□□ -1.64
SCFD1-209ENST00000553280 ANKRD13CQ8N6S4 541 aa4.81□□□□□ -1.64
SCFD1-209ENST00000553280 RBMXL3Q8N7X1 1067 aaKnown RBP4.81□□□□□ -1.64
SCFD1-209ENST00000553280 ZNF114Q8NC26 417 aa4.81□□□□□ -1.64
SCFD1-209ENST00000553280 DBF4BQ8NFT6 615 aa4.81□□□□□ -1.64
SCFD1-209ENST00000553280 SLC20A1Q8WUM9 679 aa4.81□□□□□ -1.64
SCFD1-209ENST00000553280 TMEM255BQ8WV15 326 aa4.81□□□□□ -1.64
SCFD1-209ENST00000553280 SSMEM1Q8WWF3 244 aa4.81□□□□□ -1.64
SCFD1-209ENST00000553280 SYN2Q92777 582 aaPredicted RBP4.81□□□□□ -1.64
SCFD1-209ENST00000553280 TEKT1Q969V4 418 aa4.81□□□□□ -1.64
SCFD1-209ENST00000553280 PDLIM5Q96HC4 596 aaKnown RBP4.81□□□□□ -1.64
SCFD1-209ENST00000553280 SPATA33Q96N06 139 aa4.81□□□□□ -1.64
SCFD1-209ENST00000553280 ACAT2Q9BWD1 397 aa4.81□□□□□ -1.64
SCFD1-209ENST00000553280 SF3B5Q9BWJ5 86 aaKnown RBP4.81□□□□□ -1.64
SCFD1-209ENST00000553280 ZNF350Q9GZX5 532 aa4.81□□□□□ -1.64
SCFD1-209ENST00000553280 MINDY3Q9H8M7 445 aa4.81□□□□□ -1.64
SCFD1-209ENST00000553280 LMAN1LQ9HAT1 526 aa4.81□□□□□ -1.64
SCFD1-209ENST00000553280 TUFT1Q9NNX1 390 aa4.81□□□□□ -1.64
SCFD1-209ENST00000553280 ELOVL5Q9NYP7 299 aa4.81□□□□□ -1.64
SCFD1-209ENST00000553280 SMARCAL1Q9NZC9 954 aa4.81□□□□□ -1.64
SCFD1-209ENST00000553280 SIX4Q9UIU6 781 aa4.81□□□□□ -1.64
SCFD1-209ENST00000553280 A0A1W2PRV1 198 aa4.8□□□□□ -1.64
SCFD1-209ENST00000553280 MED19A0JLT2 244 aaPredicted RBP4.8□□□□□ -1.64
SCFD1-209ENST00000553280 YDJCA8MPS7 323 aa4.8□□□□□ -1.64
SCFD1-209ENST00000553280 KERAO60938 352 aa4.8□□□□□ -1.64
SCFD1-209ENST00000553280 LDB3O75112 727 aa4.8□□□□□ -1.64
SCFD1-209ENST00000553280 WDPCPO95876 746 aa4.8□□□□□ -1.64
SCFD1-209ENST00000553280 PNPP00491 289 aa4.8□□□□□ -1.64
SCFD1-209ENST00000553280 FAM106CPP0CH98 169 aa4.8□□□□□ -1.64
SCFD1-209ENST00000553280 POLR2CP19387 275 aaPredicted RBP4.8□□□□□ -1.64
SCFD1-209ENST00000553280 ARCN1P48444 511 aaKnown RBP4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms