RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 CTTNQ14247 550 aaKnown RBP5.57□□□□□ -1.52
SCFD1-208ENST00000553278 PRAMEF8Q5VWM4 474 aa5.57□□□□□ -1.52
SCFD1-208ENST00000553278 KRTAP5-3Q6L8H2 238 aa5.57□□□□□ -1.52
SCFD1-208ENST00000553278 PODNL1Q6PEZ8 512 aa5.57□□□□□ -1.52
SCFD1-208ENST00000553278 MFSD7Q6UXD7 560 aa5.57□□□□□ -1.52
SCFD1-208ENST00000553278 TRAPPC11Q7Z392 1133 aa5.57□□□□□ -1.52
SCFD1-208ENST00000553278 ZNF410Q86VK4 478 aa5.57□□□□□ -1.52
SCFD1-208ENST00000553278 ADGRG3Q86Y34 549 aa5.57□□□□□ -1.52
SCFD1-208ENST00000553278 CCDC110Q8TBZ0 833 aa5.57□□□□□ -1.52
SCFD1-208ENST00000553278 KIAA1524Q8TCG1 905 aa5.57□□□□□ -1.52
SCFD1-208ENST00000553278 SMPDL3BQ92485 455 aa5.57□□□□□ -1.52
SCFD1-208ENST00000553278 AP2M1Q96CW1 435 aa5.57□□□□□ -1.52
SCFD1-208ENST00000553278 SGF29Q96ES7 293 aa5.57□□□□□ -1.52
SCFD1-208ENST00000553278 NAP1L3Q99457 506 aaPredicted RBP5.57□□□□□ -1.52
SCFD1-208ENST00000553278 PRRX2Q99811 253 aa5.57□□□□□ -1.52
SCFD1-208ENST00000553278 SEMA6AQ9H2E6 1030 aa5.57□□□□□ -1.52
SCFD1-208ENST00000553278 SNX25Q9H3E2 840 aa5.57□□□□□ -1.52
SCFD1-208ENST00000553278 TMEM184CQ9NVA4 438 aa5.57□□□□□ -1.52
SCFD1-208ENST00000553278 OSER1Q9NX31 292 aa5.57□□□□□ -1.52
SCFD1-208ENST00000553278 TBK1Q9UHD2 729 aa5.57□□□□□ -1.52
SCFD1-208ENST00000553278 MAD2L2Q9UI95 211 aa5.57□□□□□ -1.52
SCFD1-208ENST00000553278 AURKCQ9UQB9 309 aa5.57□□□□□ -1.52
SCFD1-208ENST00000553278 NPHP3Q7Z494 1330 aa5.56□□□□□ -1.52
SCFD1-208ENST00000553278 MAGEA13PA6NCF6 341 aa5.56□□□□□ -1.52
SCFD1-208ENST00000553278 ZNF814B7Z6K7 855 aa5.56□□□□□ -1.52
SCFD1-208ENST00000553278 K7EPI3 171 aa5.56□□□□□ -1.52
SCFD1-208ENST00000553278 MPHOSPH10O00566 681 aaKnown RBP5.56□□□□□ -1.52
SCFD1-208ENST00000553278 DVL1O14640 695 aa5.56□□□□□ -1.52
SCFD1-208ENST00000553278 FLRT2O43155 660 aa5.56□□□□□ -1.52
SCFD1-208ENST00000553278 ATG13O75143 517 aa5.56□□□□□ -1.52
SCFD1-208ENST00000553278 NDUFS7O75251 213 aa5.56□□□□□ -1.52
SCFD1-208ENST00000553278 NME6O75414 186 aaPredicted RBP5.56□□□□□ -1.52
SCFD1-208ENST00000553278 DDNO94850 711 aaPredicted RBP5.56□□□□□ -1.52
SCFD1-208ENST00000553278 PLGP00747 810 aaPredicted RBP5.56□□□□□ -1.52
SCFD1-208ENST00000553278 GHRP10912 638 aa5.56□□□□□ -1.52
SCFD1-208ENST00000553278 FERP16591 822 aa5.56□□□□□ -1.52
SCFD1-208ENST00000553278 NAGAP17050 411 aa5.56□□□□□ -1.52
SCFD1-208ENST00000553278 CLCNKAP51800 687 aa5.56□□□□□ -1.52
SCFD1-208ENST00000553278 EFEMP1Q12805 493 aa5.56□□□□□ -1.52
SCFD1-208ENST00000553278 FOXF2Q12947 444 aa5.56□□□□□ -1.52
SCFD1-208ENST00000553278 GAMTQ14353 236 aa5.56□□□□□ -1.52
SCFD1-208ENST00000553278 C12orf60Q5U649 245 aa5.56□□□□□ -1.52
SCFD1-208ENST00000553278 LRRC38Q5VT99 294 aa5.56□□□□□ -1.52
SCFD1-208ENST00000553278 CYB5D1Q6P9G0 228 aa5.56□□□□□ -1.52
SCFD1-208ENST00000553278 ATG9AQ7Z3C6 839 aa5.56□□□□□ -1.52
SCFD1-208ENST00000553278 PRSS42Q7Z5A4 293 aa5.56□□□□□ -1.52
SCFD1-208ENST00000553278 RYBPQ8N488 228 aaPredicted RBP5.56□□□□□ -1.52
SCFD1-208ENST00000553278 ACVR1CQ8NER5 493 aa5.56□□□□□ -1.52
SCFD1-208ENST00000553278 OR2AK2Q8NG84 335 aa5.56□□□□□ -1.52
SCFD1-208ENST00000553278 MAGEC3Q8TD91 643 aa5.56□□□□□ -1.52
SCFD1-208ENST00000553278 LRRC8CQ8TDW0 803 aa5.56□□□□□ -1.52
SCFD1-208ENST00000553278 WFIKKN2Q8TEU8 576 aa5.56□□□□□ -1.52
SCFD1-208ENST00000553278 LARP4BQ92615 738 aaKnown RBP5.56□□□□□ -1.52
SCFD1-208ENST00000553278 CDKN2AIPNLQ96HQ2 116 aa5.56□□□□□ -1.52
SCFD1-208ENST00000553278 MYADMQ96S97 322 aa5.56□□□□□ -1.52
SCFD1-208ENST00000553278 KCNK16Q96T55 309 aa5.56□□□□□ -1.52
SCFD1-208ENST00000553278 CMKLR1Q99788 373 aa5.56□□□□□ -1.52
SCFD1-208ENST00000553278 PKP2Q99959 881 aa5.56□□□□□ -1.52
SCFD1-208ENST00000553278 P2RY12Q9H244 342 aa5.56□□□□□ -1.52
SCFD1-208ENST00000553278 SLA2Q9H6Q3 261 aa5.56□□□□□ -1.52
SCFD1-208ENST00000553278 FZD3Q9NPG1 666 aa5.56□□□□□ -1.52
SCFD1-208ENST00000553278 POLE3Q9NRF9 147 aa5.56□□□□□ -1.52
SCFD1-208ENST00000553278 PNPLA3Q9NST1 481 aa5.56□□□□□ -1.52
SCFD1-208ENST00000553278 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP5.56□□□□□ -1.52
SCFD1-208ENST00000553278 NPAP1Q9NZP6 1156 aa5.56□□□□□ -1.52
SCFD1-208ENST00000553278 TXNDC16Q9P2K2 825 aa5.56□□□□□ -1.52
SCFD1-208ENST00000553278 IL36RNQ9UBH0 155 aa5.56□□□□□ -1.52
SCFD1-208ENST00000553278 XPO7Q9UIA9 1087 aaKnown RBP5.56□□□□□ -1.52
SCFD1-208ENST00000553278 TRMT6Q9UJA5 497 aaKnown RBP5.56□□□□□ -1.52
SCFD1-208ENST00000553278 CCPG1Q9ULG6 757 aa5.56□□□□□ -1.52
SCFD1-208ENST00000553278 PADI3Q9ULW8 664 aa5.56□□□□□ -1.52
SCFD1-208ENST00000553278 ZMYM2Q9UBW7 1377 aa5.55□□□□□ -1.52
SCFD1-208ENST00000553278 ATP8B3O60423 1300 aa5.55□□□□□ -1.52
SCFD1-208ENST00000553278 ELOVL7A1L3X0 281 aa5.55□□□□□ -1.52
SCFD1-208ENST00000553278 C5orf51A6NDU8 294 aa5.55□□□□□ -1.52
SCFD1-208ENST00000553278 RASGRF2O14827 1237 aa5.55□□□□□ -1.52
SCFD1-208ENST00000553278 SMPD2O60906 423 aa5.55□□□□□ -1.52
SCFD1-208ENST00000553278 PROP1O75360 226 aa5.55□□□□□ -1.52
SCFD1-208ENST00000553278 PRDM1O75626 825 aa5.55□□□□□ -1.52
SCFD1-208ENST00000553278 IGHV2-70P01814 119 aa5.55□□□□□ -1.52
SCFD1-208ENST00000553278 GCP02774 474 aa5.55□□□□□ -1.52
SCFD1-208ENST00000553278 ETS1P14921 441 aa5.55□□□□□ -1.52
SCFD1-208ENST00000553278 ARSBP15848 533 aa5.55□□□□□ -1.52
SCFD1-208ENST00000553278 EPCAMP16422 314 aa5.55□□□□□ -1.52
SCFD1-208ENST00000553278 IER3P46695 156 aa5.55□□□□□ -1.52
SCFD1-208ENST00000553278 CAMLGP49069 296 aa5.55□□□□□ -1.52
SCFD1-208ENST00000553278 ENTPD1P49961 510 aa5.55□□□□□ -1.52
SCFD1-208ENST00000553278 NHLH1Q02575 133 aa5.55□□□□□ -1.52
SCFD1-208ENST00000553278 CRYZQ08257 329 aaKnown RBP5.55□□□□□ -1.52
SCFD1-208ENST00000553278 GPR18Q14330 331 aa5.55□□□□□ -1.52
SCFD1-208ENST00000553278 AMZ1Q400G9 498 aa5.55□□□□□ -1.52
SCFD1-208ENST00000553278 WASHC2DQ5SRD0 308 aa5.55□□□□□ -1.52
SCFD1-208ENST00000553278 TYW3Q6IPR3 259 aaKnown RBP5.55□□□□□ -1.52
SCFD1-208ENST00000553278 RGMBQ6NW40 437 aa5.55□□□□□ -1.52
SCFD1-208ENST00000553278 RBM43Q6ZSC3 357 aaKnown RBP5.55□□□□□ -1.52
SCFD1-208ENST00000553278 TMPRSS11BQ86T26 416 aa5.55□□□□□ -1.52
SCFD1-208ENST00000553278 SERPINA12Q8IW75 414 aa5.55□□□□□ -1.52
SCFD1-208ENST00000553278 BATF2Q8N1L9 274 aa5.55□□□□□ -1.52
SCFD1-208ENST00000553278 KDM8Q8N371 416 aa5.55□□□□□ -1.52
SCFD1-208ENST00000553278 AMER3Q8N944 861 aa5.55□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms