RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 PLEKHA8Q96JA3 519 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 CASD1Q96PB1 797 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 OSBPL10Q9BXB5 764 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 XRN2Q9H0D6 950 aaKnown RBP eCLIP7.35□□□□□ -1.23
LIMA1-213ENST00000552720 ASB8Q9H765 288 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 C8orf4Q9NR00 106 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 FAIMQ9NVQ4 179 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 PAK1IP1Q9NWT1 392 aaPredicted RBP7.35□□□□□ -1.23
LIMA1-213ENST00000552720 VPS9D1Q9Y2B5 631 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 PKP3Q9Y446 797 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 MICAL3Q7RTP6 2002 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 OBSL1O75147 1896 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 A0A1B0GVM2 712 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 TRIM64BA6NI03 449 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 TMEM88BA6NKF7 163 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 PTGES3LE9PB15 166 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 H7C0S8 307 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 HAX1O00165 279 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 GNGT2O14610 69 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 RAD51BO15315 384 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 SMAD6O43541 496 aaKnown RBP7.35□□□□□ -1.23
LIMA1-213ENST00000552720 HS6ST1O60243 411 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 SEC22BO75396 215 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 CLDN7O95471 211 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 OTCP00480 354 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 RPLP2P05387 115 aaKnown RBP7.35□□□□□ -1.23
LIMA1-213ENST00000552720 PGRP06401 933 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 PFKLP17858 780 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 CCNA2P20248 432 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 CCR3P51677 355 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 KPNA1P52294 538 aaPredicted RBP7.35□□□□□ -1.23
LIMA1-213ENST00000552720 TPD52P55327 224 aaPredicted RBP7.35□□□□□ -1.23
LIMA1-213ENST00000552720 RHOAP61586 193 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 PPP2R2BQ00005 443 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 CACNG1Q06432 222 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 CD47Q08722 323 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 ILF2Q12905 390 aaKnown RBP7.35□□□□□ -1.23
LIMA1-213ENST00000552720 AQP6Q13520 282 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 ATP1A4Q13733 1029 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 PON2Q15165 354 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 BROXQ5VW32 411 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 PIWIL3Q7Z3Z3 882 aaKnown RBP7.35□□□□□ -1.23
LIMA1-213ENST00000552720 BTLAQ7Z6A9 289 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 NECAB2Q7Z6G3 386 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 ADAMTSL2Q86TH1 951 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 C8orf59Q8N0T1 100 aaPredicted RBP7.35□□□□□ -1.23
LIMA1-213ENST00000552720 NETO1Q8TDF5 533 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 GFM2Q969S9 779 aaKnown RBP7.35□□□□□ -1.23
LIMA1-213ENST00000552720 NCLNQ969V3 563 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 FAM162AQ96A26 154 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 RHBDF1Q96CC6 855 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 SLC22A12Q96S37 553 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 BARD1Q99728 777 aaKnown RBP7.35□□□□□ -1.23
LIMA1-213ENST00000552720 DPY30Q9C005 99 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 CLPBQ9H078 707 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 ACTR8Q9H981 624 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 HPS4Q9NQG7 708 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 PFDN4Q9NQP4 134 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 VNN3Q9NY84 501 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 WWOXQ9NZC7 414 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 ZNF490Q9ULM2 529 aaPredicted RBP7.35□□□□□ -1.23
LIMA1-213ENST00000552720 DLGAP4Q9Y2H0 992 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 ANGPTL3Q9Y5C1 460 aa7.35□□□□□ -1.23
LIMA1-213ENST00000552720 ELOVL7A1L3X0 281 aa7.34□□□□□ -1.23
LIMA1-213ENST00000552720 CXCR6O00574 342 aa7.34□□□□□ -1.23
LIMA1-213ENST00000552720 PFDN6O15212 129 aa7.34□□□□□ -1.23
LIMA1-213ENST00000552720 XPNPEP2O43895 674 aa7.34□□□□□ -1.23
LIMA1-213ENST00000552720 FZD6O60353 706 aa7.34□□□□□ -1.23
LIMA1-213ENST00000552720 TBL1XO60907 577 aa7.34□□□□□ -1.23
LIMA1-213ENST00000552720 MITFO75030 526 aaPredicted RBP7.34□□□□□ -1.23
LIMA1-213ENST00000552720 SEC24AO95486 1093 aa7.34□□□□□ -1.23
LIMA1-213ENST00000552720 S100BP04271 92 aaPredicted RBP7.34□□□□□ -1.23
LIMA1-213ENST00000552720 MYCLP1P12525 358 aaPredicted RBP7.34□□□□□ -1.23
LIMA1-213ENST00000552720 CD9P21926 228 aa7.34□□□□□ -1.23
LIMA1-213ENST00000552720 TTKP33981 857 aa7.34□□□□□ -1.23
LIMA1-213ENST00000552720 OR1D2P34982 312 aa7.34□□□□□ -1.23
LIMA1-213ENST00000552720 HMGCLP35914 325 aa7.34□□□□□ -1.23
LIMA1-213ENST00000552720 CDKN2CP42773 168 aa7.34□□□□□ -1.23
LIMA1-213ENST00000552720 NEK2P51955 445 aa7.34□□□□□ -1.23
LIMA1-213ENST00000552720 C21orf59P57076 290 aa7.34□□□□□ -1.23
LIMA1-213ENST00000552720 GRSF1Q12849 480 aaKnown RBP eCLIP7.34□□□□□ -1.23
LIMA1-213ENST00000552720 SLC14A1Q13336 389 aa7.34□□□□□ -1.23
LIMA1-213ENST00000552720 CBX2Q14781 532 aaPredicted RBP7.34□□□□□ -1.23
LIMA1-213ENST00000552720 SPCS2Q15005 226 aa7.34□□□□□ -1.23
LIMA1-213ENST00000552720 CPSF6Q16630 551 aaKnown RBP eCLIP7.34□□□□□ -1.23
LIMA1-213ENST00000552720 ZXDCQ2QGD7 858 aaPredicted RBP7.34□□□□□ -1.23
LIMA1-213ENST00000552720 ZNF829Q3KNS6 432 aaPredicted RBP7.34□□□□□ -1.23
LIMA1-213ENST00000552720 HECTD3Q5T447 861 aa7.34□□□□□ -1.23
LIMA1-213ENST00000552720 ADGRF1Q5T601 910 aa7.34□□□□□ -1.23
LIMA1-213ENST00000552720 GTF2IRD2BQ6EKJ0 949 aa7.34□□□□□ -1.23
LIMA1-213ENST00000552720 GALNT18Q6P9A2 607 aa7.34□□□□□ -1.23
LIMA1-213ENST00000552720 ZNF551Q7Z340 670 aaPredicted RBP7.34□□□□□ -1.23
LIMA1-213ENST00000552720 GALNT10Q86SR1 603 aa7.34□□□□□ -1.23
LIMA1-213ENST00000552720 ZNF554Q86TJ5 538 aa7.34□□□□□ -1.23
LIMA1-213ENST00000552720 GTF2IRD2Q86UP8 949 aa7.34□□□□□ -1.23
LIMA1-213ENST00000552720 CROCCP3Q8IVE0 287 aa7.34□□□□□ -1.23
LIMA1-213ENST00000552720 PARP8Q8N3A8 854 aa7.34□□□□□ -1.23
LIMA1-213ENST00000552720 RNF175Q8N4F7 328 aa7.34□□□□□ -1.23
LIMA1-213ENST00000552720 DBF4BQ8NFT6 615 aa7.34□□□□□ -1.23
LIMA1-213ENST00000552720 OR8J3Q8NGG0 315 aa7.34□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms