RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 CSNK1G1Q9HCP0 422 aa15.37■□□□□ 0.05
CUX1-211ENST00000546411 ABCB10Q9NRK6 738 aa15.37■□□□□ 0.05
CUX1-211ENST00000546411 ACTR3BQ9P1U1 418 aa15.37■□□□□ 0.05
CUX1-211ENST00000546411 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.37■□□□□ 0.05
CUX1-211ENST00000546411 PABPC1P11940 636 aaKnown RBP15.37■□□□□ 0.05
CUX1-211ENST00000546411 DEFA1P59665 94 aa15.37■□□□□ 0.05
CUX1-211ENST00000546411 DEFA3P59666 94 aa15.37■□□□□ 0.05
CUX1-211ENST00000546411 PIGGQ5H8A4 983 aa15.37■□□□□ 0.05
CUX1-211ENST00000546411 HIPK1Q86Z02 1210 aa15.37■□□□□ 0.05
CUX1-211ENST00000546411 TRPV1Q8NER1 839 aa15.37■□□□□ 0.05
CUX1-211ENST00000546411 SMG7Q92540 1137 aaKnown RBP15.37■□□□□ 0.05
CUX1-211ENST00000546411 IGSF21Q96ID5 467 aa15.37■□□□□ 0.05
CUX1-211ENST00000546411 C3orf30Q96M34 536 aa15.37■□□□□ 0.05
CUX1-211ENST00000546411 OR2AG1Q9H205 316 aa15.37■□□□□ 0.05
CUX1-211ENST00000546411 SMURF2Q9HAU4 748 aa15.37■□□□□ 0.05
CUX1-211ENST00000546411 THG1LQ9NWX6 298 aaKnown RBP15.37■□□□□ 0.05
CUX1-211ENST00000546411 GJD2Q9UKL4 321 aa15.37■□□□□ 0.05
CUX1-211ENST00000546411 SAMD4AQ9UPU9 718 aaKnown RBP15.37■□□□□ 0.05
CUX1-211ENST00000546411 GPSM3Q9Y4H4 160 aa15.37■□□□□ 0.05
CUX1-211ENST00000546411 INSL5Q9Y5Q6 135 aa15.37■□□□□ 0.05
CUX1-211ENST00000546411 OR10H3O60404 316 aa15.36■□□□□ 0.05
CUX1-211ENST00000546411 DFNA5O60443 496 aa15.36■□□□□ 0.05
CUX1-211ENST00000546411 TGFB1P01137 390 aa15.36■□□□□ 0.05
CUX1-211ENST00000546411 NR2F1P10589 423 aa15.36■□□□□ 0.05
CUX1-211ENST00000546411 PIK3C3Q8NEB9 887 aa15.36■□□□□ 0.05
CUX1-211ENST00000546411 OR13J1Q8NGT2 312 aa15.36■□□□□ 0.05
CUX1-211ENST00000546411 CTPS2Q9NRF8 586 aa15.36■□□□□ 0.05
CUX1-211ENST00000546411 GALNT8Q9NY28 637 aa15.36■□□□□ 0.05
CUX1-211ENST00000546411 HTRA2O43464 458 aaPredicted RBP15.36■□□□□ 0.05
CUX1-211ENST00000546411 RAP2AP10114 183 aa15.36■□□□□ 0.05
CUX1-211ENST00000546411 UMPSP11172 480 aa15.36■□□□□ 0.05
CUX1-211ENST00000546411 SLC26A3P40879 764 aa15.36■□□□□ 0.05
CUX1-211ENST00000546411 PREPP48147 710 aa15.36■□□□□ 0.05
CUX1-211ENST00000546411 RING1Q06587 406 aa15.36■□□□□ 0.05
CUX1-211ENST00000546411 TRAF3Q13114 568 aa15.36■□□□□ 0.05
CUX1-211ENST00000546411 HKDC1Q2TB90 917 aa15.36■□□□□ 0.05
CUX1-211ENST00000546411 ZNF648Q5T619 568 aaPredicted RBP15.36■□□□□ 0.05
CUX1-211ENST00000546411 GPR153Q6NV75 609 aa15.36■□□□□ 0.05
CUX1-211ENST00000546411 KBTBD6Q86V97 674 aa15.36■□□□□ 0.05
CUX1-211ENST00000546411 KRT78Q8N1N4 520 aa15.36■□□□□ 0.05
CUX1-211ENST00000546411 KRTCAP2Q8N6L1 136 aa15.36■□□□□ 0.05
CUX1-211ENST00000546411 SORCS1Q8WY21 1168 aa15.36■□□□□ 0.05
CUX1-211ENST00000546411 STARD8Q92502 1023 aa15.36■□□□□ 0.05
CUX1-211ENST00000546411 REXO4Q9GZR2 422 aaKnown RBP15.36■□□□□ 0.05
CUX1-211ENST00000546411 ZDHHC4Q9NPG8 344 aa15.36■□□□□ 0.05
CUX1-211ENST00000546411 AP3M1Q9Y2T2 418 aa15.36■□□□□ 0.05
CUX1-211ENST00000546411 LDB2O43679 373 aa15.36■□□□□ 0.05
CUX1-211ENST00000546411 SLC35G4P0C7Q5 338 aa15.36■□□□□ 0.05
CUX1-211ENST00000546411 CAPN3P20807 821 aa15.36■□□□□ 0.05
CUX1-211ENST00000546411 ERMP1Q7Z2K6 904 aa15.36■□□□□ 0.05
CUX1-211ENST00000546411 APCDD1Q8J025 514 aa15.36■□□□□ 0.05
CUX1-211ENST00000546411 PSMA8Q8TAA3 256 aa15.36■□□□□ 0.05
CUX1-211ENST00000546411 FAM81AQ8TBF8 368 aa15.36■□□□□ 0.05
CUX1-211ENST00000546411 MCMBPQ9BTE3 642 aa15.36■□□□□ 0.05
CUX1-211ENST00000546411 TPK1Q9H3S4 243 aa15.36■□□□□ 0.05
CUX1-211ENST00000546411 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP15.36■□□□□ 0.05
CUX1-211ENST00000546411 GMPR2Q9P2T1 348 aaKnown RBP15.36■□□□□ 0.05
CUX1-211ENST00000546411 B4GALT6Q9UBX8 382 aa15.36■□□□□ 0.05
CUX1-211ENST00000546411 PRKAB1Q9Y478 270 aa15.36■□□□□ 0.05
CUX1-211ENST00000546411 IL6P05231 212 aa15.35■□□□□ 0.05
CUX1-211ENST00000546411 HNF1BP35680 557 aa15.35■□□□□ 0.05
CUX1-211ENST00000546411 MED22Q15528 200 aa15.35■□□□□ 0.05
CUX1-211ENST00000546411 DGUOKQ16854 277 aa15.35■□□□□ 0.05
CUX1-211ENST00000546411 TPGS2Q68CL5 300 aa15.35■□□□□ 0.05
CUX1-211ENST00000546411 EGFL6Q8IUX8 553 aa15.35■□□□□ 0.05
CUX1-211ENST00000546411 AHI1Q8N157 1196 aa15.35■□□□□ 0.05
CUX1-211ENST00000546411 ZNF483Q8TF39 744 aaPredicted RBP15.35■□□□□ 0.05
CUX1-211ENST00000546411 ZHX1-C8orf76Q96EF9 292 aa15.35■□□□□ 0.05
CUX1-211ENST00000546411 PPP1R16AQ96I34 528 aa15.35■□□□□ 0.05
CUX1-211ENST00000546411 SYNDIG1Q9H7V2 258 aa15.35■□□□□ 0.05
CUX1-211ENST00000546411 EQTNQ9NQ60 294 aa15.35■□□□□ 0.05
CUX1-211ENST00000546411 CREBZFQ9NS37 354 aa15.35■□□□□ 0.05
CUX1-211ENST00000546411 ZNF510Q9Y2H8 683 aa15.35■□□□□ 0.05
CUX1-211ENST00000546411 KLHL20Q9Y2M5 609 aa15.35■□□□□ 0.05
CUX1-211ENST00000546411 COL5A3P25940 1745 aaPredicted RBP15.35■□□□□ 0.05
CUX1-211ENST00000546411 MAGEB17A8MXT2 336 aa15.35■□□□□ 0.05
CUX1-211ENST00000546411 SEC24AO95486 1093 aa15.35■□□□□ 0.05
CUX1-211ENST00000546411 NFATC2Q13469 925 aa15.35■□□□□ 0.05
CUX1-211ENST00000546411 LIN28BQ6ZN17 250 aaKnown RBP eCLIP15.35■□□□□ 0.051e-8■■■■□ 26.3
CUX1-211ENST00000546411 TSPAN33Q86UF1 283 aa15.35■□□□□ 0.05
CUX1-211ENST00000546411 NT5C3BQ969T7 300 aa15.35■□□□□ 0.05
CUX1-211ENST00000546411 EXOSC8Q96B26 276 aaKnown RBP15.35■□□□□ 0.05
CUX1-211ENST00000546411 RBM4BQ9BQ04 359 aaKnown RBP15.35■□□□□ 0.05
CUX1-211ENST00000546411 RBM4Q9BWF3 364 aaKnown RBP15.35■□□□□ 0.05
CUX1-211ENST00000546411 GSTO2Q9H4Y5 243 aa15.35■□□□□ 0.05
CUX1-211ENST00000546411 ETAA1Q9NY74 926 aa15.35■□□□□ 0.05
CUX1-211ENST00000546411 ISM1B1AKI9 464 aa15.35■□□□□ 0.05
CUX1-211ENST00000546411 PER2O15055 1255 aa15.35■□□□□ 0.05
CUX1-211ENST00000546411 CHRM5P08912 532 aaPredicted RBP15.35■□□□□ 0.05
CUX1-211ENST00000546411 SOX6P35712 828 aa15.35■□□□□ 0.05
CUX1-211ENST00000546411 GPR33Q49SQ1 333 aa15.35■□□□□ 0.05
CUX1-211ENST00000546411 MFSD4BQ5TF39 518 aa15.35■□□□□ 0.05
CUX1-211ENST00000546411 KCTD11Q693B1 232 aa15.35■□□□□ 0.05
CUX1-211ENST00000546411 PPP4R4Q6NUP7 873 aa15.35■□□□□ 0.05
CUX1-211ENST00000546411 TRIM69Q86WT6 500 aa15.35■□□□□ 0.05
CUX1-211ENST00000546411 OR8D1Q8WZ84 308 aa15.35■□□□□ 0.05
CUX1-211ENST00000546411 MEAF6Q9HAF1 191 aa15.35■□□□□ 0.05
CUX1-211ENST00000546411 HMG20AQ9NP66 347 aa15.35■□□□□ 0.05
CUX1-211ENST00000546411 ZDHHC3Q9NYG2 299 aa15.35■□□□□ 0.05
CUX1-211ENST00000546411 MYO10Q9HD67 2058 aa15.35■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms