RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 ASB11Q8WXH4 323 aa15.97■□□□□ 0.15
COL4A1-204ENST00000543140 ZUFSPQ96AP4 578 aa15.97■□□□□ 0.15
COL4A1-204ENST00000543140 ZNF707Q96C28 371 aaPredicted RBP15.97■□□□□ 0.15
COL4A1-204ENST00000543140 PPP3R2Q96LZ3 170 aa15.97■□□□□ 0.15
COL4A1-204ENST00000543140 P2RY13Q9BPV8 354 aa15.97■□□□□ 0.15
COL4A1-204ENST00000543140 UBAP1Q9NZ09 502 aa15.97■□□□□ 0.15
COL4A1-204ENST00000543140 A0A1W2PQ67 120 aa15.96■□□□□ 0.15
COL4A1-204ENST00000543140 TMEM202A6NGA9 273 aa15.96■□□□□ 0.15
COL4A1-204ENST00000543140 CLDN9O95484 217 aa15.96■□□□□ 0.15
COL4A1-204ENST00000543140 HNRNPA1P09651 372 aaKnown RBP eCLIP15.96■□□□□ 0.15
COL4A1-204ENST00000543140 HIST1H2AGP0C0S8 130 aaPredicted RBP15.96■□□□□ 0.15
COL4A1-204ENST00000543140 ZNF26P17031 533 aaPredicted RBP15.96■□□□□ 0.15
COL4A1-204ENST00000543140 ZNF30P17039 623 aa15.96■□□□□ 0.15
COL4A1-204ENST00000543140 PSMC3P17980 439 aa15.96■□□□□ 0.15
COL4A1-204ENST00000543140 HIST1H2ADP20671 130 aa15.96■□□□□ 0.15
COL4A1-204ENST00000543140 OXTRP30559 389 aa15.96■□□□□ 0.15
COL4A1-204ENST00000543140 GGT5P36269 586 aa15.96■□□□□ 0.15
COL4A1-204ENST00000543140 GRIN2CQ14957 1233 aa15.96■□□□□ 0.15
COL4A1-204ENST00000543140 TBCELQ5QJ74 424 aa15.96■□□□□ 0.15
COL4A1-204ENST00000543140 EP400NLQ6ZTU2 488 aa15.96■□□□□ 0.15
COL4A1-204ENST00000543140 RSPRY1Q96DX4 576 aa15.96■□□□□ 0.15
COL4A1-204ENST00000543140 ERLEC1Q96DZ1 483 aa15.96■□□□□ 0.15
COL4A1-204ENST00000543140 HIST1H2AHQ96KK5 128 aa15.96■□□□□ 0.15
COL4A1-204ENST00000543140 HIST1H2AJQ99878 128 aa15.96■□□□□ 0.15
COL4A1-204ENST00000543140 H2AFJQ9BTM1 129 aa15.96■□□□□ 0.15
COL4A1-204ENST00000543140 SLC12A9Q9BXP2 914 aa15.96■□□□□ 0.15
COL4A1-204ENST00000543140 SLC32A1Q9H598 525 aa15.96■□□□□ 0.15
COL4A1-204ENST00000543140 ACTR3BQ9P1U1 418 aa15.96■□□□□ 0.15
COL4A1-204ENST00000543140 SLC8A2Q9UPR5 921 aa15.96■□□□□ 0.15
COL4A1-204ENST00000543140 DHRS12A0PJE2 317 aa15.96■□□□□ 0.14
COL4A1-204ENST00000543140 FAM149AA5PLN7 773 aa15.96■□□□□ 0.14
COL4A1-204ENST00000543140 C16orf96A6NNT2 1141 aa15.96■□□□□ 0.14
COL4A1-204ENST00000543140 INPP4BO15327 924 aa15.96■□□□□ 0.14
COL4A1-204ENST00000543140 WDR47O94967 919 aa15.96■□□□□ 0.14
COL4A1-204ENST00000543140 CAPNS1P04632 268 aa15.96■□□□□ 0.14
COL4A1-204ENST00000543140 MSH3P20585 1137 aa15.96■□□□□ 0.14
COL4A1-204ENST00000543140 HOXA9P31269 272 aa15.96■□□□□ 0.14
COL4A1-204ENST00000543140 NEK2P51955 445 aa15.96■□□□□ 0.14
COL4A1-204ENST00000543140 METAP1P53582 386 aa15.96■□□□□ 0.14
COL4A1-204ENST00000543140 BNIP2Q12982 314 aa15.96■□□□□ 0.14
COL4A1-204ENST00000543140 PTCHD3Q3KNS1 767 aa15.96■□□□□ 0.14
COL4A1-204ENST00000543140 UGT2A3Q6UWM9 527 aa15.96■□□□□ 0.14
COL4A1-204ENST00000543140 LIX1Q8N485 282 aa15.96■□□□□ 0.14
COL4A1-204ENST00000543140 CLHC1Q8NHS4 586 aa15.96■□□□□ 0.14
COL4A1-204ENST00000543140 DUS3LQ96G46 650 aaKnown RBP15.96■□□□□ 0.14
COL4A1-204ENST00000543140 SLC29A1Q99808 456 aa15.96■□□□□ 0.14
COL4A1-204ENST00000543140 YIPF3Q9GZM5 350 aa15.96■□□□□ 0.14
COL4A1-204ENST00000543140 ATG10Q9H0Y0 220 aa15.96■□□□□ 0.14
COL4A1-204ENST00000543140 MARK1Q9P0L2 795 aa15.96■□□□□ 0.14
COL4A1-204ENST00000543140 CIDEBQ9UHD4 219 aa15.96■□□□□ 0.14
COL4A1-204ENST00000543140 C15orf38-AP3S2A0A0A6YYH1 394 aa15.95■□□□□ 0.14
COL4A1-204ENST00000543140 GRXCR1A8MXD5 290 aa15.95■□□□□ 0.14
COL4A1-204ENST00000543140 DENRO43583 198 aaKnown RBP15.95■□□□□ 0.14
COL4A1-204ENST00000543140 SGTAO43765 313 aa15.95■□□□□ 0.14
COL4A1-204ENST00000543140 NUAK1O60285 661 aa15.95■□□□□ 0.14
COL4A1-204ENST00000543140 ADH5P11766 374 aa15.95■□□□□ 0.14
COL4A1-204ENST00000543140 CKMT2P17540 419 aa15.95■□□□□ 0.14
COL4A1-204ENST00000543140 ITPKAP23677 461 aa15.95■□□□□ 0.14
COL4A1-204ENST00000543140 GNPDA1P46926 289 aa15.95■□□□□ 0.14
COL4A1-204ENST00000543140 MTPNP58546 118 aa15.95■□□□□ 0.14
COL4A1-204ENST00000543140 ZNF805Q5CZA5 627 aa15.95■□□□□ 0.14
COL4A1-204ENST00000543140 PSRC1Q6PGN9 363 aaPredicted RBP15.95■□□□□ 0.14
COL4A1-204ENST00000543140 DLEU7Q6UYE1 221 aa15.95■□□□□ 0.14
COL4A1-204ENST00000543140 ARPINQ7Z6K5 226 aa15.95■□□□□ 0.14
COL4A1-204ENST00000543140 PLPP6Q8IY26 295 aa15.95■□□□□ 0.14
COL4A1-204ENST00000543140 LEMD2Q8NC56 503 aa15.95■□□□□ 0.14
COL4A1-204ENST00000543140 OTUB2Q96DC9 234 aa15.95■□□□□ 0.14
COL4A1-204ENST00000543140 WRAP53Q9BUR4 548 aaKnown RBP15.95■□□□□ 0.14
COL4A1-204ENST00000543140 SLC2A11Q9BYW1 496 aa15.95■□□□□ 0.14
COL4A1-204ENST00000543140 LRTM1Q9HBL6 345 aa15.95■□□□□ 0.14
COL4A1-204ENST00000543140 PDP2Q9P2J9 529 aa15.95■□□□□ 0.14
COL4A1-204ENST00000543140 KLHL42Q9P2K6 505 aa15.95■□□□□ 0.14
COL4A1-204ENST00000543140 TRPS1Q9UHF7 1281 aa15.95■□□□□ 0.14
COL4A1-204ENST00000543140 RAB26Q9ULW5 256 aa15.95■□□□□ 0.14
COL4A1-204ENST00000543140 EIF3LQ9Y262 564 aaKnown RBP15.95■□□□□ 0.14
COL4A1-204ENST00000543140 V9GYQ6 96 aa15.95■□□□□ 0.14
COL4A1-204ENST00000543140 SLC28A1O00337 649 aa15.95■□□□□ 0.14
COL4A1-204ENST00000543140 KPNA3O00505 521 aaPredicted RBP15.95■□□□□ 0.14
COL4A1-204ENST00000543140 SLC9A3R1O14745 358 aaPredicted RBP15.95■□□□□ 0.14
COL4A1-204ENST00000543140 PDYNP01213 254 aa15.95■□□□□ 0.14
COL4A1-204ENST00000543140 C8GP07360 202 aa15.95■□□□□ 0.14
COL4A1-204ENST00000543140 CISD3P0C7P0 127 aa15.95■□□□□ 0.14
COL4A1-204ENST00000543140 EN2P19622 333 aaPredicted RBP15.95■□□□□ 0.14
COL4A1-204ENST00000543140 VARSP26640 1264 aaKnown RBP15.95■□□□□ 0.14
COL4A1-204ENST00000543140 CHN2P52757 468 aa15.95■□□□□ 0.14
COL4A1-204ENST00000543140 SELPLGQ14242 412 aa15.95■□□□□ 0.14
COL4A1-204ENST00000543140 FOXB2Q5VYV0 432 aa15.95■□□□□ 0.14
COL4A1-204ENST00000543140 LCN8Q6JVE9 175 aa15.95■□□□□ 0.14
COL4A1-204ENST00000543140 TMC5Q6UXY8 1006 aa15.95■□□□□ 0.14
COL4A1-204ENST00000543140 KRTCAP2Q8N6L1 136 aa15.95■□□□□ 0.14
COL4A1-204ENST00000543140 FOXJ1Q92949 421 aa15.95■□□□□ 0.14
COL4A1-204ENST00000543140 TRIM15Q9C019 465 aa15.95■□□□□ 0.14
COL4A1-204ENST00000543140 Q9H521 79 aa15.95■□□□□ 0.14
COL4A1-204ENST00000543140 CCM2LQ9NUG4 571 aaPredicted RBP15.95■□□□□ 0.14
COL4A1-204ENST00000543140 SLC22A14Q9Y267 594 aa15.95■□□□□ 0.14
COL4A1-204ENST00000543140 PLXNA2O75051 1894 aa15.94■□□□□ 0.14
COL4A1-204ENST00000543140 C7orf72A4D263 438 aa15.94■□□□□ 0.14
COL4A1-204ENST00000543140 PABPN1LA6NDY0 278 aaKnown RBP15.94■□□□□ 0.14
COL4A1-204ENST00000543140 AQP12BA6NM10 295 aa15.94■□□□□ 0.14
COL4A1-204ENST00000543140 CFAP99D6REC4 459 aa15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms