RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 OR5B12Q96R08 314 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 SNX18Q96RF0 628 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 CRB3Q9BUF7 120 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 NPLQ9BXD5 320 aaPredicted RBP8.63□□□□□ -1.03
YBX3-208ENST00000540447 LRRC3Q9BY71 257 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 LHPPQ9H008 270 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 TVP23BQ9NYZ1 205 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 TLR6Q9Y2C9 796 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 MAGED1Q9Y5V3 778 aaPredicted RBP8.63□□□□□ -1.03
YBX3-208ENST00000540447 GJA3Q9Y6H8 435 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 A0A1B0GVI7 797 aa8.62□□□□□ -1.03
YBX3-208ENST00000540447 LRRN3E7EW58 273 aa8.62□□□□□ -1.03
YBX3-208ENST00000540447 TOR1AO14656 332 aa8.62□□□□□ -1.03
YBX3-208ENST00000540447 TP53P04637 393 aaPredicted RBP8.62□□□□□ -1.03
YBX3-208ENST00000540447 PTPN11Q06124 597 aaPredicted RBP8.62□□□□□ -1.03
YBX3-208ENST00000540447 C7orf57Q8NEG2 295 aa8.62□□□□□ -1.03
YBX3-208ENST00000540447 ZFP90Q8TF47 636 aa8.62□□□□□ -1.03
YBX3-208ENST00000540447 ELMOD3Q96FG2 381 aa8.62□□□□□ -1.03
YBX3-208ENST00000540447 LRRN3Q9H3W5 708 aa8.62□□□□□ -1.03
YBX3-208ENST00000540447 RHOJQ9H4E5 214 aa8.62□□□□□ -1.03
YBX3-208ENST00000540447 C17orf75Q9HAS0 396 aa8.62□□□□□ -1.03
YBX3-208ENST00000540447 CCDC85CA6NKD9 419 aa8.62□□□□□ -1.03
YBX3-208ENST00000540447 ADAM10O14672 748 aa8.62□□□□□ -1.03
YBX3-208ENST00000540447 KLF11O14901 512 aa8.62□□□□□ -1.03
YBX3-208ENST00000540447 RASAL1O95294 804 aa8.62□□□□□ -1.03
YBX3-208ENST00000540447 ZNF7P17097 686 aaPredicted RBP8.62□□□□□ -1.03
YBX3-208ENST00000540447 HK1P19367 917 aa8.62□□□□□ -1.03
YBX3-208ENST00000540447 ATP6V0D1P61421 351 aa8.62□□□□□ -1.03
YBX3-208ENST00000540447 TROAPQ12815 778 aa8.62□□□□□ -1.03
YBX3-208ENST00000540447 ABRQ12979 859 aa8.62□□□□□ -1.03
YBX3-208ENST00000540447 ACOX1Q15067 660 aa8.62□□□□□ -1.03
YBX3-208ENST00000540447 ATF7IP2Q5U623 682 aa8.62□□□□□ -1.03
YBX3-208ENST00000540447 SLC16A9Q7RTY1 509 aa8.62□□□□□ -1.03
YBX3-208ENST00000540447 KLHL36Q8N4N3 616 aa8.62□□□□□ -1.03
YBX3-208ENST00000540447 OR2T35Q8NGX2 323 aa8.62□□□□□ -1.03
YBX3-208ENST00000540447 SNX33Q8WV41 574 aa8.62□□□□□ -1.03
YBX3-208ENST00000540447 TMEM176AQ96HP8 235 aa8.62□□□□□ -1.03
YBX3-208ENST00000540447 RDH12Q96NR8 316 aa8.62□□□□□ -1.03
YBX3-208ENST00000540447 ANXA2P2A6NMY6 339 aa8.62□□□□□ -1.03
YBX3-208ENST00000540447 F5H6K3 240 aa8.62□□□□□ -1.03
YBX3-208ENST00000540447 ITGA10O75578 1167 aa8.62□□□□□ -1.03
YBX3-208ENST00000540447 SLC34A2O95436 690 aa8.62□□□□□ -1.03
YBX3-208ENST00000540447 CDK1P06493 297 aa8.62□□□□□ -1.03
YBX3-208ENST00000540447 ANXA2P07355 339 aaKnown RBP8.62□□□□□ -1.03
YBX3-208ENST00000540447 ANXA8P13928 327 aa8.62□□□□□ -1.03
YBX3-208ENST00000540447 GPR1P46091 355 aa8.62□□□□□ -1.03
YBX3-208ENST00000540447 MTPNP58546 118 aa8.62□□□□□ -1.03
YBX3-208ENST00000540447 CLCQ05315 142 aa8.62□□□□□ -1.03
YBX3-208ENST00000540447 CTBP1Q13363 440 aa8.62□□□□□ -1.03
YBX3-208ENST00000540447 PIWIL3Q7Z3Z3 882 aaKnown RBP8.62□□□□□ -1.03
YBX3-208ENST00000540447 ANKS1BQ7Z6G8 1248 aa8.62□□□□□ -1.03
YBX3-208ENST00000540447 SEPT5Q99719 369 aaPredicted RBP8.62□□□□□ -1.03
YBX3-208ENST00000540447 TREX2Q9BQ50 279 aaPredicted RBP8.62□□□□□ -1.03
YBX3-208ENST00000540447 TMED9Q9BVK6 235 aa8.62□□□□□ -1.03
YBX3-208ENST00000540447 SEMA3GQ9NS98 782 aa8.62□□□□□ -1.03
YBX3-208ENST00000540447 FBXL3Q9UKT7 428 aa8.62□□□□□ -1.03
YBX3-208ENST00000540447 CFAP65Q6ZU64 1925 aaKnown RBP8.62□□□□□ -1.03
YBX3-208ENST00000540447 EEF1E1O43324 174 aaKnown RBP8.62□□□□□ -1.03
YBX3-208ENST00000540447 OR1I1O60431 355 aa8.62□□□□□ -1.03
YBX3-208ENST00000540447 MYF6P23409 242 aa8.62□□□□□ -1.03
YBX3-208ENST00000540447 CAP2P40123 477 aa8.62□□□□□ -1.03
YBX3-208ENST00000540447 SLC26A2P50443 739 aa8.62□□□□□ -1.03
YBX3-208ENST00000540447 ARSFP54793 590 aa8.62□□□□□ -1.03
YBX3-208ENST00000540447 CDH11P55287 796 aa8.62□□□□□ -1.03
YBX3-208ENST00000540447 GABARAPL2P60520 117 aa8.62□□□□□ -1.03
YBX3-208ENST00000540447 KLF1Q13351 362 aaPredicted RBP8.62□□□□□ -1.03
YBX3-208ENST00000540447 DUSP6Q16828 381 aa8.62□□□□□ -1.03
YBX3-208ENST00000540447 AP5B1Q2VPB7 878 aa8.62□□□□□ -1.03
YBX3-208ENST00000540447 SPATS1Q496A3 300 aa8.62□□□□□ -1.03
YBX3-208ENST00000540447 TMEM198Q66K66 360 aa8.62□□□□□ -1.03
YBX3-208ENST00000540447 LARGE2Q8N3Y3 721 aa8.62□□□□□ -1.03
YBX3-208ENST00000540447 TSEN15Q8WW01 171 aaKnown RBP8.62□□□□□ -1.03
YBX3-208ENST00000540447 XPNPEP1Q9NQW7 623 aa8.62□□□□□ -1.03
YBX3-208ENST00000540447 FAM86C1Q9NVL1 165 aa8.62□□□□□ -1.03
YBX3-208ENST00000540447 NR2E1Q9Y466 385 aa8.62□□□□□ -1.03
YBX3-208ENST00000540447 HRH3Q9Y5N1 445 aa8.62□□□□□ -1.03
YBX3-208ENST00000540447 KLRC4O43908 158 aa8.62□□□□□ -1.03
YBX3-208ENST00000540447 SPDEFO95238 335 aa8.62□□□□□ -1.03
YBX3-208ENST00000540447 FECHP22830 423 aa8.62□□□□□ -1.03
YBX3-208ENST00000540447 BUD31P41223 144 aaPredicted RBP8.62□□□□□ -1.03
YBX3-208ENST00000540447 ALDH3B1P43353 468 aa8.62□□□□□ -1.03
YBX3-208ENST00000540447 E2F1Q01094 437 aa8.62□□□□□ -1.03
YBX3-208ENST00000540447 C2orf80Q0P641 193 aa8.62□□□□□ -1.03
YBX3-208ENST00000540447 SEMA5AQ13591 1074 aa8.62□□□□□ -1.03
YBX3-208ENST00000540447 SCGB2B2Q4G0G5 96 aa8.62□□□□□ -1.03
YBX3-208ENST00000540447 MSANTD2Q6P1R3 559 aa8.62□□□□□ -1.03
YBX3-208ENST00000540447 ACOT1Q86TX2 421 aa8.62□□□□□ -1.03
YBX3-208ENST00000540447 FBXL16Q8N461 479 aa8.62□□□□□ -1.03
YBX3-208ENST00000540447 ADAMTS16Q8TE57 1224 aa8.62□□□□□ -1.03
YBX3-208ENST00000540447 PIWIL1Q96J94 861 aaKnown RBP8.62□□□□□ -1.03
YBX3-208ENST00000540447 QRFPRQ96P65 431 aa8.62□□□□□ -1.03
YBX3-208ENST00000540447 PNMA5Q96PV4 448 aa8.62□□□□□ -1.03
YBX3-208ENST00000540447 RNF157Q96PX1 679 aa8.62□□□□□ -1.03
YBX3-208ENST00000540447 TAS2R10Q9NYW0 307 aa8.62□□□□□ -1.03
YBX3-208ENST00000540447 NPAP1Q9NZP6 1156 aa8.62□□□□□ -1.03
YBX3-208ENST00000540447 RUVBL1Q9Y265 456 aaKnown RBP8.62□□□□□ -1.03
YBX3-208ENST00000540447 KIAA0513O60268 411 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 NPHS1O60500 1241 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 LDOC1O95751 146 aaPredicted RBP8.61□□□□□ -1.03
YBX3-208ENST00000540447 FUCA1P04066 466 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 1853.6 ms