RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 TOP1MTQ969P6 601 aa16.55■□□□□ 0.24
USP28-208ENST00000540438 DGCR14Q96DF8 476 aaKnown RBP16.55■□□□□ 0.24
USP28-208ENST00000540438 ZFYVE19Q96K21 471 aa16.55■□□□□ 0.24
USP28-208ENST00000540438 OR52E6Q96RD3 313 aa16.55■□□□□ 0.24
USP28-208ENST00000540438 SPG21Q9NZD8 308 aa16.55■□□□□ 0.24
USP28-208ENST00000540438 GNPTGQ9UJJ9 305 aa16.55■□□□□ 0.24
USP28-208ENST00000540438 TMPRSS11EQ9UL52 423 aa16.55■□□□□ 0.24
USP28-208ENST00000540438 FADS3Q9Y5Q0 445 aa16.55■□□□□ 0.24
USP28-208ENST00000540438 DGKBQ9Y6T7 804 aa16.55■□□□□ 0.24
USP28-208ENST00000540438 BBIP1A8MTZ0 92 aa16.55■□□□□ 0.24
USP28-208ENST00000540438 TTC34A8MYJ7 566 aa16.55■□□□□ 0.24
USP28-208ENST00000540438 PRR35P0CG20 571 aa16.55■□□□□ 0.24
USP28-208ENST00000540438 HALP42357 657 aa16.55■□□□□ 0.24
USP28-208ENST00000540438 SLC14A1Q13336 389 aa16.55■□□□□ 0.24
USP28-208ENST00000540438 TCEA2Q15560 299 aa16.55■□□□□ 0.24
USP28-208ENST00000540438 PTCHD3Q3KNS1 767 aa16.55■□□□□ 0.24
USP28-208ENST00000540438 INO80DQ53TQ3 878 aaPredicted RBP16.55■□□□□ 0.24
USP28-208ENST00000540438 SPATA19Q7Z5L4 167 aa16.55■□□□□ 0.24
USP28-208ENST00000540438 ITFG1Q8TB96 612 aa16.55■□□□□ 0.24
USP28-208ENST00000540438 P2RY13Q9BPV8 354 aa16.55■□□□□ 0.24
USP28-208ENST00000540438 WRAP53Q9BUR4 548 aaKnown RBP16.55■□□□□ 0.24
USP28-208ENST00000540438 OSBPL11Q9BXB4 747 aa16.55■□□□□ 0.24
USP28-208ENST00000540438 BRD9Q9H8M2 597 aa16.55■□□□□ 0.24
USP28-208ENST00000540438 SLC25A37Q9NYZ2 338 aa16.55■□□□□ 0.24
USP28-208ENST00000540438 PDE10AQ9Y233 779 aa16.55■□□□□ 0.24
USP28-208ENST00000540438 AREL1O15033 823 aa16.54■□□□□ 0.24
USP28-208ENST00000540438 ACOX3O15254 700 aa16.54■□□□□ 0.24
USP28-208ENST00000540438 PRAMEF4O60810 478 aa16.54■□□□□ 0.24
USP28-208ENST00000540438 FGF18O76093 207 aa16.54■□□□□ 0.24
USP28-208ENST00000540438 IGSF6O95976 241 aa16.54■□□□□ 0.24
USP28-208ENST00000540438 OTCP00480 354 aa16.54■□□□□ 0.24
USP28-208ENST00000540438 PENKP01210 267 aaPredicted RBP16.54■□□□□ 0.24
USP28-208ENST00000540438 SERPINA4P29622 427 aa16.54■□□□□ 0.24
USP28-208ENST00000540438 AQP1P29972 269 aa16.54■□□□□ 0.24
USP28-208ENST00000540438 CTBSQ01459 385 aa16.54■□□□□ 0.24
USP28-208ENST00000540438 TEAD2Q15562 447 aa16.54■□□□□ 0.24
USP28-208ENST00000540438 PRAMEF9Q5VWM5 478 aa16.54■□□□□ 0.24
USP28-208ENST00000540438 TXNDC11Q6PKC3 985 aa16.54■□□□□ 0.24
USP28-208ENST00000540438 AHI1Q8N157 1196 aa16.54■□□□□ 0.24
USP28-208ENST00000540438 TFAP2CQ92754 450 aa16.54■□□□□ 0.24
USP28-208ENST00000540438 MUS81Q96NY9 551 aa16.54■□□□□ 0.24
USP28-208ENST00000540438 CD244Q9BZW8 370 aa16.54■□□□□ 0.24
USP28-208ENST00000540438 ADNPQ9H2P0 1102 aa16.54■□□□□ 0.24
USP28-208ENST00000540438 MRPL40Q9NQ50 206 aaKnown RBP16.54■□□□□ 0.24
USP28-208ENST00000540438 GPRC5BQ9NZH0 403 aa16.54■□□□□ 0.24
USP28-208ENST00000540438 NUDT4Q9NZJ9 180 aa16.54■□□□□ 0.24
USP28-208ENST00000540438 PTBP2Q9UKA9 531 aaKnown RBP16.54■□□□□ 0.24
USP28-208ENST00000540438 PRKAB1Q9Y478 270 aa16.54■□□□□ 0.24
USP28-208ENST00000540438 FAM234BA2RU67 622 aa16.54■□□□□ 0.24
USP28-208ENST00000540438 GNGT2O14610 69 aa16.54■□□□□ 0.24
USP28-208ENST00000540438 EEDO75530 441 aaKnown RBP16.54■□□□□ 0.24
USP28-208ENST00000540438 STK16O75716 305 aa16.54■□□□□ 0.24
USP28-208ENST00000540438 CYP4B1P13584 511 aa16.54■□□□□ 0.24
USP28-208ENST00000540438 EPB42P16452 691 aa16.54■□□□□ 0.24
USP28-208ENST00000540438 IL7RP16871 459 aa16.54■□□□□ 0.24
USP28-208ENST00000540438 SPAM1P38567 509 aa16.54■□□□□ 0.24
USP28-208ENST00000540438 PSMD8P48556 350 aa16.54■□□□□ 0.24
USP28-208ENST00000540438 CCT8P50990 548 aa16.54■□□□□ 0.24
USP28-208ENST00000540438 ATP4BP51164 291 aa16.54■□□□□ 0.24
USP28-208ENST00000540438 ERVFC1P60507 584 aa16.54■□□□□ 0.24
USP28-208ENST00000540438 C16orf72Q14CZ0 275 aa16.54■□□□□ 0.24
USP28-208ENST00000540438 GPRC6AQ5T6X5 926 aa16.54■□□□□ 0.24
USP28-208ENST00000540438 LPCAT2Q7L5N7 544 aa16.54■□□□□ 0.24
USP28-208ENST00000540438 GALNT5Q7Z7M9 940 aa16.54■□□□□ 0.24
USP28-208ENST00000540438 KLHL23Q8NBE8 558 aa16.54■□□□□ 0.24
USP28-208ENST00000540438 APIPQ96GX9 242 aa16.54■□□□□ 0.24
USP28-208ENST00000540438 ZSWIM3Q96MP5 696 aa16.54■□□□□ 0.24
USP28-208ENST00000540438 COPS8Q99627 209 aa16.54■□□□□ 0.24
USP28-208ENST00000540438 DPH2Q9BQC3 489 aaPredicted RBP16.54■□□□□ 0.24
USP28-208ENST00000540438 ACPTQ9BZG2 426 aa16.54■□□□□ 0.24
USP28-208ENST00000540438 SAP18O00422 153 aaKnown RBP16.54■□□□□ 0.24
USP28-208ENST00000540438 KLK8O60259 260 aa16.54■□□□□ 0.24
USP28-208ENST00000540438 PRKD3O94806 890 aa16.54■□□□□ 0.24
USP28-208ENST00000540438 HSD17B1P14061 328 aa16.54■□□□□ 0.24
USP28-208ENST00000540438 HOXB8P17481 243 aaPredicted RBP16.54■□□□□ 0.24
USP28-208ENST00000540438 DGKAP23743 735 aa16.54■□□□□ 0.24
USP28-208ENST00000540438 VARSP26640 1264 aaKnown RBP16.54■□□□□ 0.24
USP28-208ENST00000540438 RAB33AQ14088 237 aa16.54■□□□□ 0.24
USP28-208ENST00000540438 SPIDRQ14159 915 aa16.54■□□□□ 0.24
USP28-208ENST00000540438 RBBP5Q15291 538 aaKnown RBP16.54■□□□□ 0.24
USP28-208ENST00000540438 PPP4R4Q6NUP7 873 aa16.54■□□□□ 0.24
USP28-208ENST00000540438 HID1Q8IV36 788 aa16.54■□□□□ 0.24
USP28-208ENST00000540438 SFTPA1Q8IWL2 248 aa16.54■□□□□ 0.24
USP28-208ENST00000540438 GPR156Q8NFN8 814 aa16.54■□□□□ 0.24
USP28-208ENST00000540438 TMBIM1Q969X1 311 aa16.54■□□□□ 0.24
USP28-208ENST00000540438 CENPNQ96H22 339 aaPredicted RBP16.54■□□□□ 0.24
USP28-208ENST00000540438 MRPS26Q9BYN8 205 aaKnown RBP16.54■□□□□ 0.24
USP28-208ENST00000540438 ADGRE2Q9UHX3 823 aa16.54■□□□□ 0.24
USP28-208ENST00000540438 VPS9D1Q9Y2B5 631 aa16.54■□□□□ 0.24
USP28-208ENST00000540438 TRANK1O15050 2925 aa16.53■□□□□ 0.24
USP28-208ENST00000540438 F5P12259 2224 aa16.53■□□□□ 0.24
USP28-208ENST00000540438 TCRBV5S2A0A599 114 aa16.53■□□□□ 0.24
USP28-208ENST00000540438 H3BNH8 94 aa16.53■□□□□ 0.24
USP28-208ENST00000540438 HNRNPRO43390 633 aaKnown RBP16.53■□□□□ 0.24
USP28-208ENST00000540438 LDLRP01130 860 aa16.53■□□□□ 0.24
USP28-208ENST00000540438 STT3AP46977 705 aa16.53■□□□□ 0.24
USP28-208ENST00000540438 CLCN2P51788 898 aa16.53■□□□□ 0.24
USP28-208ENST00000540438 CLCN4P51793 760 aa16.53■□□□□ 0.24
USP28-208ENST00000540438 NEK5Q6P3R8 708 aa16.53■□□□□ 0.24
USP28-208ENST00000540438 SLC13A3Q8WWT9 602 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms