RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 DHCR7Q9UBM7 475 aaKnown RBP11.23□□□□□ -0.61
CLSTN3-209ENST00000539982 FAM153AQ9UHL3 310 aa11.23□□□□□ -0.61
CLSTN3-209ENST00000539982 FBXL4Q9UKA2 621 aa11.23□□□□□ -0.61
CLSTN3-209ENST00000539982 PKP3Q9Y446 797 aa11.23□□□□□ -0.61
CLSTN3-209ENST00000539982 BZW2Q9Y6E2 419 aaKnown RBP11.23□□□□□ -0.61
CLSTN3-209ENST00000539982 DCHS2Q6V1P9 2916 aa11.23□□□□□ -0.61
CLSTN3-209ENST00000539982 ANKRD12Q6UB98 2062 aa11.23□□□□□ -0.61
CLSTN3-209ENST00000539982 CNTRLQ7Z7A1 2325 aa11.23□□□□□ -0.61
CLSTN3-209ENST00000539982 ZNF487B1APH4 448 aa11.22□□□□□ -0.61
CLSTN3-209ENST00000539982 PPP1R12AO14974 1030 aaPredicted RBP11.22□□□□□ -0.61
CLSTN3-209ENST00000539982 HCRTR1O43613 425 aa11.22□□□□□ -0.61
CLSTN3-209ENST00000539982 SGTAO43765 313 aa11.22□□□□□ -0.61
CLSTN3-209ENST00000539982 ATXN8OSP0DMR3 200 aa11.22□□□□□ -0.61
CLSTN3-209ENST00000539982 MMP11P24347 488 aa11.22□□□□□ -0.61
CLSTN3-209ENST00000539982 GABRA4P48169 554 aa11.22□□□□□ -0.61
CLSTN3-209ENST00000539982 WNT3AP56704 352 aa11.22□□□□□ -0.61
CLSTN3-209ENST00000539982 SLC9A5Q14940 896 aa11.22□□□□□ -0.61
CLSTN3-209ENST00000539982 NOMO1Q15155 1222 aa11.22□□□□□ -0.61
CLSTN3-209ENST00000539982 ZNF630Q2M218 657 aaPredicted RBP11.22□□□□□ -0.61
CLSTN3-209ENST00000539982 IRAK1BP1Q5VVH5 260 aa11.22□□□□□ -0.61
CLSTN3-209ENST00000539982 SLC9A4Q6AI14 798 aa11.22□□□□□ -0.61
CLSTN3-209ENST00000539982 CAVIN1Q6NZI2 390 aaKnown RBP11.22□□□□□ -0.61
CLSTN3-209ENST00000539982 TLDC1Q6P9B6 456 aa11.22□□□□□ -0.61
CLSTN3-209ENST00000539982 MYO7BQ6PIF6 2116 aa11.22□□□□□ -0.61
CLSTN3-209ENST00000539982 SARM1Q6SZW1 724 aa11.22□□□□□ -0.61
CLSTN3-209ENST00000539982 KDELC1Q6UW63 502 aa11.22□□□□□ -0.61
CLSTN3-209ENST00000539982 GLT6D1Q7Z4J2 308 aa11.22□□□□□ -0.61
CLSTN3-209ENST00000539982 DAAM2Q86T65 1068 aa11.22□□□□□ -0.61
CLSTN3-209ENST00000539982 HOOK3Q86VS8 718 aa11.22□□□□□ -0.61
CLSTN3-209ENST00000539982 TMEM151BQ8IW70 566 aa11.22□□□□□ -0.61
CLSTN3-209ENST00000539982 ADGRF3Q8IZF5 1079 aa11.22□□□□□ -0.61
CLSTN3-209ENST00000539982 C19orf47Q8N9M1 422 aaKnown RBP11.22□□□□□ -0.61
CLSTN3-209ENST00000539982 CCDC168Q8NDH2 2452 aa11.22□□□□□ -0.61
CLSTN3-209ENST00000539982 PHC3Q8NDX5 983 aa11.22□□□□□ -0.61
CLSTN3-209ENST00000539982 OR52E1Q8NGJ3 308 aa11.22□□□□□ -0.61
CLSTN3-209ENST00000539982 BLOC1S5Q8TDH9 187 aa11.22□□□□□ -0.61
CLSTN3-209ENST00000539982 NAT14Q8WUY8 206 aa11.22□□□□□ -0.61
CLSTN3-209ENST00000539982 TBRG4Q969Z0 631 aaKnown RBP eCLIP11.22□□□□□ -0.61
CLSTN3-209ENST00000539982 RBM41Q96IZ5 413 aaKnown RBP11.22□□□□□ -0.61
CLSTN3-209ENST00000539982 TEKT5Q96M29 485 aa11.22□□□□□ -0.61
CLSTN3-209ENST00000539982 OLFM3Q96PB7 478 aa11.22□□□□□ -0.61
CLSTN3-209ENST00000539982 NRTNQ99748 197 aa11.22□□□□□ -0.61
CLSTN3-209ENST00000539982 MAK16Q9BXY0 300 aaKnown RBP11.22□□□□□ -0.61
CLSTN3-209ENST00000539982 CHRNA10Q9GZZ6 450 aa11.22□□□□□ -0.61
CLSTN3-209ENST00000539982 EPS8L2Q9H6S3 715 aa11.22□□□□□ -0.61
CLSTN3-209ENST00000539982 TXLNGQ9NUQ3 528 aa11.22□□□□□ -0.61
CLSTN3-209ENST00000539982 ACTR10Q9NZ32 417 aa11.22□□□□□ -0.61
CLSTN3-209ENST00000539982 DOCK10Q96BY6 2186 aa11.21□□□□□ -0.61
CLSTN3-209ENST00000539982 C17orf113A0A1B0GUU1 675 aa11.21□□□□□ -0.61
CLSTN3-209ENST00000539982 CCDC78A2IDD5 438 aa11.21□□□□□ -0.61
CLSTN3-209ENST00000539982 APOL1O14791 398 aa11.21□□□□□ -0.61
CLSTN3-209ENST00000539982 PCDH17O14917 1159 aa11.21□□□□□ -0.61
CLSTN3-209ENST00000539982 STX7O15400 261 aaKnown RBP11.21□□□□□ -0.61
CLSTN3-209ENST00000539982 ZSCAN9O15535 394 aaPredicted RBP11.21□□□□□ -0.61
CLSTN3-209ENST00000539982 PRAMEF1O95521 474 aa11.21□□□□□ -0.61
CLSTN3-209ENST00000539982 COX6B1P14854 86 aa11.21□□□□□ -0.61
CLSTN3-209ENST00000539982 ZFXP17010 805 aaPredicted RBP11.21□□□□□ -0.61
CLSTN3-209ENST00000539982 PTPN3P26045 913 aa11.21□□□□□ -0.61
CLSTN3-209ENST00000539982 HTR1EP28566 365 aa11.21□□□□□ -0.61
CLSTN3-209ENST00000539982 CHRNA4P43681 627 aa11.21□□□□□ -0.61
CLSTN3-209ENST00000539982 TNNT3P45378 269 aaPredicted RBP11.21□□□□□ -0.61
CLSTN3-209ENST00000539982 CD151P48509 253 aa11.21□□□□□ -0.61
CLSTN3-209ENST00000539982 ZIC1Q15915 447 aa11.21□□□□□ -0.61
CLSTN3-209ENST00000539982 FILIP1LQ4L180 1135 aa11.21□□□□□ -0.61
CLSTN3-209ENST00000539982 VWA2Q5GFL6 755 aa11.21□□□□□ -0.61
CLSTN3-209ENST00000539982 ZNF324BQ6AW86 544 aaPredicted RBP11.21□□□□□ -0.61
CLSTN3-209ENST00000539982 SPESP1Q6UW49 350 aa11.21□□□□□ -0.61
CLSTN3-209ENST00000539982 NPNTQ6UXI9 565 aa11.21□□□□□ -0.61
CLSTN3-209ENST00000539982 BNC2Q6ZN30 1099 aaPredicted RBP11.21□□□□□ -0.61
CLSTN3-209ENST00000539982 MRGPRGQ86SM5 289 aa11.21□□□□□ -0.61
CLSTN3-209ENST00000539982 VSIG1Q86XK7 387 aa11.21□□□□□ -0.61
CLSTN3-209ENST00000539982 NXPE1Q8N323 547 aa11.21□□□□□ -0.61
CLSTN3-209ENST00000539982 ZNF808Q8N4W9 903 aaPredicted RBP11.21□□□□□ -0.61
CLSTN3-209ENST00000539982 SLC25A41Q8N5S1 370 aa11.21□□□□□ -0.61
CLSTN3-209ENST00000539982 ZNF655Q8N720 491 aaPredicted RBP11.21□□□□□ -0.61
CLSTN3-209ENST00000539982 CATSPER1Q8NEC5 780 aa11.21□□□□□ -0.61
CLSTN3-209ENST00000539982 HM13Q8TCT9 377 aa11.21□□□□□ -0.61
CLSTN3-209ENST00000539982 TRAF3IP1Q8TDR0 691 aaPredicted RBP11.21□□□□□ -0.61
CLSTN3-209ENST00000539982 DCUN1D1Q96GG9 259 aa11.21□□□□□ -0.61
CLSTN3-209ENST00000539982 LMF1Q96S06 567 aa11.21□□□□□ -0.61
CLSTN3-209ENST00000539982 LHPPQ9H008 270 aa11.21□□□□□ -0.61
CLSTN3-209ENST00000539982 DEF6Q9H4E7 631 aa11.21□□□□□ -0.61
CLSTN3-209ENST00000539982 XKR8Q9H6D3 395 aa11.21□□□□□ -0.61
CLSTN3-209ENST00000539982 ASB8Q9H765 288 aa11.21□□□□□ -0.61
CLSTN3-209ENST00000539982 MVB12BQ9H7P6 319 aa11.21□□□□□ -0.61
CLSTN3-209ENST00000539982 SLC22A11Q9NSA0 550 aa11.21□□□□□ -0.61
CLSTN3-209ENST00000539982 SUCOQ9UBS9 1254 aaKnown RBP11.21□□□□□ -0.61
CLSTN3-209ENST00000539982 CDC23Q9UJX2 597 aa11.21□□□□□ -0.61
CLSTN3-209ENST00000539982 PCM1Q15154 2024 aa11.21□□□□□ -0.62
CLSTN3-209ENST00000539982 MED13LQ71F56 2210 aa11.2□□□□□ -0.62
CLSTN3-209ENST00000539982 AKAP9Q99996 3911 aa11.2□□□□□ -0.62
CLSTN3-209ENST00000539982 A0A087X0T9 212 aa11.2□□□□□ -0.62
CLSTN3-209ENST00000539982 LRRD1A4D1F6 860 aa11.2□□□□□ -0.62
CLSTN3-209ENST00000539982 C3orf70A6NLC5 250 aaPredicted RBP11.2□□□□□ -0.62
CLSTN3-209ENST00000539982 IFRD1O00458 451 aaPredicted RBP11.2□□□□□ -0.62
CLSTN3-209ENST00000539982 SOCS6O14544 535 aa11.2□□□□□ -0.62
CLSTN3-209ENST00000539982 ALOX12BO75342 701 aa11.2□□□□□ -0.62
CLSTN3-209ENST00000539982 CTSBP07858 339 aa11.2□□□□□ -0.62
CLSTN3-209ENST00000539982 SNRPB2P08579 225 aaKnown RBP11.2□□□□□ -0.62
CLSTN3-209ENST00000539982 FAM228BP0C875 321 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms