RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 KIFC1Q9BW19 673 aa12.23□□□□□ -0.45
CLSTN3-208ENST00000538933 TEX101Q9BY14 249 aa12.23□□□□□ -0.45
CLSTN3-208ENST00000538933 WDR26Q9H7D7 661 aa12.23□□□□□ -0.45
CLSTN3-208ENST00000538933 BPIFA1Q9NP55 256 aa12.23□□□□□ -0.45
CLSTN3-208ENST00000538933 ARFGAP3Q9NP61 516 aa12.23□□□□□ -0.45
CLSTN3-208ENST00000538933 RAD18Q9NS91 495 aa12.23□□□□□ -0.45
CLSTN3-208ENST00000538933 SUFUQ9UMX1 484 aa12.23□□□□□ -0.45
CLSTN3-208ENST00000538933 SLC5A6Q9Y289 635 aa12.23□□□□□ -0.45
CLSTN3-208ENST00000538933 PLEKHM1Q9Y4G2 1056 aa12.23□□□□□ -0.45
CLSTN3-208ENST00000538933 PCDHGA9Q9Y5G4 932 aaKnown RBP12.23□□□□□ -0.45
CLSTN3-208ENST00000538933 PCNX1Q96RV3 2341 aa12.23□□□□□ -0.45
CLSTN3-208ENST00000538933 PSMD11O00231 422 aa12.22□□□□□ -0.45
CLSTN3-208ENST00000538933 AURKAO14965 403 aa12.22□□□□□ -0.45
CLSTN3-208ENST00000538933 GSTA2P09210 222 aa12.22□□□□□ -0.45
CLSTN3-208ENST00000538933 MYCLP1P12525 358 aaPredicted RBP12.22□□□□□ -0.45
CLSTN3-208ENST00000538933 NMBRP28336 390 aa12.22□□□□□ -0.45
CLSTN3-208ENST00000538933 SSTR1P30872 391 aa12.22□□□□□ -0.45
CLSTN3-208ENST00000538933 STX2P32856 288 aa12.22□□□□□ -0.45
CLSTN3-208ENST00000538933 HMGCLP35914 325 aa12.22□□□□□ -0.45
CLSTN3-208ENST00000538933 GNPDA1P46926 289 aa12.22□□□□□ -0.45
CLSTN3-208ENST00000538933 POLD2P49005 469 aa12.22□□□□□ -0.45
CLSTN3-208ENST00000538933 PGDP52209 483 aa12.22□□□□□ -0.45
CLSTN3-208ENST00000538933 THOC5Q13769 683 aaKnown RBP12.22□□□□□ -0.45
CLSTN3-208ENST00000538933 PTPRRQ15256 657 aa12.22□□□□□ -0.45
CLSTN3-208ENST00000538933 CNGA3Q16281 694 aa12.22□□□□□ -0.45
CLSTN3-208ENST00000538933 KYNUQ16719 465 aa12.22□□□□□ -0.45
CLSTN3-208ENST00000538933 LONRF1Q17RB8 773 aa12.22□□□□□ -0.45
CLSTN3-208ENST00000538933 ANKRD20A4Q4UJ75 823 aa12.22□□□□□ -0.45
CLSTN3-208ENST00000538933 CHCHD2P9Q5T1J5 151 aaPredicted RBP12.22□□□□□ -0.45
CLSTN3-208ENST00000538933 ZDHHC20Q5W0Z9 365 aa12.22□□□□□ -0.45
CLSTN3-208ENST00000538933 JMJD6Q6NYC1 403 aaPredicted RBP12.22□□□□□ -0.45
CLSTN3-208ENST00000538933 C6orf15Q6UXA7 325 aaPredicted RBP12.22□□□□□ -0.45
CLSTN3-208ENST00000538933 UNC5AQ6ZN44 842 aa12.22□□□□□ -0.45
CLSTN3-208ENST00000538933 C3orf62Q6ZUJ4 267 aa12.22□□□□□ -0.45
CLSTN3-208ENST00000538933 RELL1Q8IUW5 271 aa12.22□□□□□ -0.45
CLSTN3-208ENST00000538933 GALNT6Q8NCL4 622 aa12.22□□□□□ -0.45
CLSTN3-208ENST00000538933 OR6P1Q8NGX9 317 aa12.22□□□□□ -0.45
CLSTN3-208ENST00000538933 GSDMBQ8TAX9 411 aa12.22□□□□□ -0.45
CLSTN3-208ENST00000538933 CDKL2Q92772 493 aa12.22□□□□□ -0.45
CLSTN3-208ENST00000538933 TBRG4Q969Z0 631 aaKnown RBP eCLIP12.22□□□□□ -0.45
CLSTN3-208ENST00000538933 MARVELD3Q96A59 401 aa12.22□□□□□ -0.45
CLSTN3-208ENST00000538933 MOCOSQ96EN8 888 aa12.22□□□□□ -0.45
CLSTN3-208ENST00000538933 C19orf60Q96EN9 201 aa12.22□□□□□ -0.45
CLSTN3-208ENST00000538933 RNF31Q96EP0 1072 aa12.22□□□□□ -0.45
CLSTN3-208ENST00000538933 MFSD3Q96ES6 412 aa12.22□□□□□ -0.45
CLSTN3-208ENST00000538933 SCARF2Q96GP6 870 aaPredicted RBP12.22□□□□□ -0.45
CLSTN3-208ENST00000538933 DNAJC1Q96KC8 554 aaKnown RBP12.22□□□□□ -0.45
CLSTN3-208ENST00000538933 TWSG1Q9GZX9 223 aa12.22□□□□□ -0.45
CLSTN3-208ENST00000538933 SUDS3Q9H7L9 328 aaPredicted RBP12.22□□□□□ -0.45
CLSTN3-208ENST00000538933 NINJ2Q9NZG7 142 aa12.22□□□□□ -0.45
CLSTN3-208ENST00000538933 A0A087WUV0 522 aaPredicted RBP12.21□□□□□ -0.45
CLSTN3-208ENST00000538933 A0A0U1RQS6 177 aa12.21□□□□□ -0.45
CLSTN3-208ENST00000538933 PIPSLA2A3N6 862 aa12.21□□□□□ -0.45
CLSTN3-208ENST00000538933 MROH6A6NGR9 719 aa12.21□□□□□ -0.45
CLSTN3-208ENST00000538933 LDB2O43679 373 aa12.21□□□□□ -0.45
CLSTN3-208ENST00000538933 KATNA1O75449 491 aa12.21□□□□□ -0.45
CLSTN3-208ENST00000538933 EML2O95834 649 aa12.21□□□□□ -0.45
CLSTN3-208ENST00000538933 LHCGRP22888 699 aa12.21□□□□□ -0.45
CLSTN3-208ENST00000538933 SPAM1P38567 509 aa12.21□□□□□ -0.45
CLSTN3-208ENST00000538933 BIRC2Q13490 618 aa12.21□□□□□ -0.45
CLSTN3-208ENST00000538933 CRYMQ14894 314 aa12.21□□□□□ -0.45
CLSTN3-208ENST00000538933 ALS2CLQ60I27 953 aa12.21□□□□□ -0.45
CLSTN3-208ENST00000538933 IGDCC3Q8IVU1 814 aa12.21□□□□□ -0.45
CLSTN3-208ENST00000538933 AGGF1Q8N302 714 aaeCLIP12.21□□□□□ -0.45
CLSTN3-208ENST00000538933 CBARPQ8N350 705 aaPredicted RBP12.21□□□□□ -0.45
CLSTN3-208ENST00000538933 TTC30BQ8N4P2 665 aa12.21□□□□□ -0.45
CLSTN3-208ENST00000538933 OR13C4Q8NGS5 318 aa12.21□□□□□ -0.45
CLSTN3-208ENST00000538933 OR10G6Q8NH81 332 aa12.21□□□□□ -0.45
CLSTN3-208ENST00000538933 UHMK1Q8TAS1 419 aaKnown RBP12.21□□□□□ -0.45
CLSTN3-208ENST00000538933 SLC37A2Q8TED4 501 aa12.21□□□□□ -0.45
CLSTN3-208ENST00000538933 PEX13Q92968 403 aa12.21□□□□□ -0.45
CLSTN3-208ENST00000538933 COQ10AQ96MF6 247 aa12.21□□□□□ -0.45
CLSTN3-208ENST00000538933 C5orf34Q96MH7 638 aa12.21□□□□□ -0.45
CLSTN3-208ENST00000538933 CCDC77Q9BR77 488 aa12.21□□□□□ -0.45
CLSTN3-208ENST00000538933 ULBP3Q9BZM4 244 aa12.21□□□□□ -0.45
CLSTN3-208ENST00000538933 UNKQ9C0B0 810 aaKnown RBP12.21□□□□□ -0.45
CLSTN3-208ENST00000538933 C20orf96Q9NUD7 363 aaPredicted RBP12.21□□□□□ -0.45
CLSTN3-208ENST00000538933 NLE1Q9NVX2 485 aaPredicted RBP12.21□□□□□ -0.45
CLSTN3-208ENST00000538933 KCND3Q9UK17 655 aa12.21□□□□□ -0.45
CLSTN3-208ENST00000538933 RIMKLBQ9ULI2 386 aa12.21□□□□□ -0.45
CLSTN3-208ENST00000538933 SLC17A4Q9Y2C5 497 aa12.21□□□□□ -0.45
CLSTN3-208ENST00000538933 SLC30A1Q9Y6M5 507 aa12.21□□□□□ -0.45
CLSTN3-208ENST00000538933 FAM169AQ9Y6X4 670 aa12.21□□□□□ -0.45
CLSTN3-208ENST00000538933 MDC1Q14676 2089 aaKnown RBP12.2□□□□□ -0.46
CLSTN3-208ENST00000538933 TRBV23OR9-2A0A075B6M9 112 aa12.2□□□□□ -0.46
CLSTN3-208ENST00000538933 RIPK2O43353 540 aa12.2□□□□□ -0.46
CLSTN3-208ENST00000538933 HNRNPRO43390 633 aaKnown RBP12.2□□□□□ -0.46
CLSTN3-208ENST00000538933 ITGALP20701 1170 aa12.2□□□□□ -0.46
CLSTN3-208ENST00000538933 ZNF140P52738 457 aaPredicted RBP12.2□□□□□ -0.46
CLSTN3-208ENST00000538933 STC1P52823 247 aa12.2□□□□□ -0.46
CLSTN3-208ENST00000538933 IFFO1Q0D2I5 559 aa12.2□□□□□ -0.46
CLSTN3-208ENST00000538933 MSLNQ13421 630 aaPredicted RBP12.2□□□□□ -0.46
CLSTN3-208ENST00000538933 PTPRCAPQ14761 206 aa12.2□□□□□ -0.46
CLSTN3-208ENST00000538933 NR6A1Q15406 480 aa12.2□□□□□ -0.46
CLSTN3-208ENST00000538933 ZRANB3Q5FWF4 1079 aa12.2□□□□□ -0.46
CLSTN3-208ENST00000538933 CPZQ66K79 652 aa12.2□□□□□ -0.46
CLSTN3-208ENST00000538933 PDPK2PQ6A1A2 396 aa12.2□□□□□ -0.46
CLSTN3-208ENST00000538933 KIAA0930Q6ICG6 404 aaPredicted RBP12.2□□□□□ -0.46
CLSTN3-208ENST00000538933 AFTPHQ6ULP2 937 aa12.2□□□□□ -0.46
CLSTN3-208ENST00000538933 HSD11B1LQ7Z5J1 315 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms