RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 A0A0B4J293 547 aa3.37□□□□□ -1.87
USP48-215ENST00000534705 SYNDIG1LA6NDD5 238 aa3.37□□□□□ -1.87
USP48-215ENST00000534705 NPIPB15A6NHN6 443 aaPredicted RBP3.37□□□□□ -1.87
USP48-215ENST00000534705 VCYO14598 125 aa3.37□□□□□ -1.87
USP48-215ENST00000534705 PAGE4O60829 102 aa3.37□□□□□ -1.87
USP48-215ENST00000534705 DKC1O60832 514 aaKnown RBP eCLIP3.37□□□□□ -1.87
USP48-215ENST00000534705 SURF6O75683 361 aaKnown RBP3.37□□□□□ -1.87
USP48-215ENST00000534705 BAG2O95816 211 aa3.37□□□□□ -1.87
USP48-215ENST00000534705 IGHDP01880 384 aa3.37□□□□□ -1.87
USP48-215ENST00000534705 HSPA8P11142 646 aaKnown RBP3.37□□□□□ -1.87
USP48-215ENST00000534705 ZNF182P17025 639 aaPredicted RBP3.37□□□□□ -1.87
USP48-215ENST00000534705 ALOX12P18054 663 aa3.37□□□□□ -1.87
USP48-215ENST00000534705 CASQ1P31415 396 aa3.37□□□□□ -1.87
USP48-215ENST00000534705 MAP2K2P36507 400 aa3.37□□□□□ -1.87
USP48-215ENST00000534705 HARS2P49590 506 aaKnown RBP3.37□□□□□ -1.87
USP48-215ENST00000534705 DRG2P55039 364 aaKnown RBP3.37□□□□□ -1.87
USP48-215ENST00000534705 CASP6P55212 293 aa3.37□□□□□ -1.87
USP48-215ENST00000534705 HUNKP57058 714 aa3.37□□□□□ -1.87
USP48-215ENST00000534705 FKBP1BP68106 108 aa3.37□□□□□ -1.87
USP48-215ENST00000534705 PITX1P78337 314 aaPredicted RBP3.37□□□□□ -1.87
USP48-215ENST00000534705 MEA1Q16626 185 aa3.37□□□□□ -1.87
USP48-215ENST00000534705 DPCR1Q3MIW9 517 aa3.37□□□□□ -1.87
USP48-215ENST00000534705 CXorf66Q5JRM2 361 aaPredicted RBP3.37□□□□□ -1.87
USP48-215ENST00000534705 FKBP1CQ5VVH2 108 aa3.37□□□□□ -1.87
USP48-215ENST00000534705 SIGIRRQ6IA17 410 aa3.37□□□□□ -1.87
USP48-215ENST00000534705 CDC42EP5Q6NZY7 148 aa3.37□□□□□ -1.87
USP48-215ENST00000534705 GFRALQ6UXV0 394 aa3.37□□□□□ -1.87
USP48-215ENST00000534705 DPPA4Q7L190 304 aa3.37□□□□□ -1.87
USP48-215ENST00000534705 ADGRA1Q86SQ6 560 aa3.37□□□□□ -1.87
USP48-215ENST00000534705 SMIM29Q86T20 159 aa3.37□□□□□ -1.87
USP48-215ENST00000534705 RPAP2Q8IXW5 612 aaPredicted RBP3.37□□□□□ -1.87
USP48-215ENST00000534705 NDUFAF2Q8N183 169 aa3.37□□□□□ -1.87
USP48-215ENST00000534705 KRT222Q8N1A0 295 aa3.37□□□□□ -1.87
USP48-215ENST00000534705 OTUD6BQ8N6M0 293 aa3.37□□□□□ -1.87
USP48-215ENST00000534705 PCDH20Q8N6Y1 951 aaKnown RBP3.37□□□□□ -1.87
USP48-215ENST00000534705 LMNTD1Q8N9Z9 388 aa3.37□□□□□ -1.87
USP48-215ENST00000534705 SPATA20Q8TB22 786 aa3.37□□□□□ -1.87
USP48-215ENST00000534705 THAP6Q8TBB0 222 aa3.37□□□□□ -1.87
USP48-215ENST00000534705 KIAA1524Q8TCG1 905 aa3.37□□□□□ -1.87
USP48-215ENST00000534705 TAAR8Q969N4 342 aa3.37□□□□□ -1.87
USP48-215ENST00000534705 ITFG2Q969R8 447 aa3.37□□□□□ -1.87
USP48-215ENST00000534705 TEKT1Q969V4 418 aa3.37□□□□□ -1.87
USP48-215ENST00000534705 NSUN4Q96CB9 384 aaKnown RBP3.37□□□□□ -1.87
USP48-215ENST00000534705 RRNAD1Q96FB5 475 aaKnown RBP3.37□□□□□ -1.87
USP48-215ENST00000534705 PPP1R13BQ96KQ4 1090 aa3.37□□□□□ -1.87
USP48-215ENST00000534705 HARBI1Q96MB7 349 aa3.37□□□□□ -1.87
USP48-215ENST00000534705 TMEM68Q96MH6 324 aa3.37□□□□□ -1.87
USP48-215ENST00000534705 PIP5K1AQ99755 562 aa3.37□□□□□ -1.87
USP48-215ENST00000534705 BAG1Q99933 345 aaPredicted RBP3.37□□□□□ -1.87
USP48-215ENST00000534705 C1QTNF5Q9BXJ0 243 aa3.37□□□□□ -1.87
USP48-215ENST00000534705 DEFB129Q9H1M3 183 aa3.37□□□□□ -1.87
USP48-215ENST00000534705 FKRPQ9H9S5 495 aa3.37□□□□□ -1.87
USP48-215ENST00000534705 DIAPH3Q9NSV4 1193 aa3.37□□□□□ -1.87
USP48-215ENST00000534705 RBM28Q9NW13 759 aaKnown RBP3.37□□□□□ -1.87
USP48-215ENST00000534705 ARGLU1Q9NWB6 273 aaPredicted RBP3.37□□□□□ -1.87
USP48-215ENST00000534705 DLGAP2Q9P1A6 1054 aa3.37□□□□□ -1.87
USP48-215ENST00000534705 UBA2Q9UBT2 640 aaPredicted RBP3.37□□□□□ -1.87
USP48-215ENST00000534705 ABT1Q9ULW3 272 aaKnown RBP3.37□□□□□ -1.87
USP48-215ENST00000534705 LOXL2Q9Y4K0 774 aa3.37□□□□□ -1.87
USP48-215ENST00000534705 MMP24Q9Y5R2 645 aa3.37□□□□□ -1.87
USP48-215ENST00000534705 MAGED1Q9Y5V3 778 aaPredicted RBP3.37□□□□□ -1.87
USP48-215ENST00000534705 MKI67P46013 3256 aaKnown RBP3.37□□□□□ -1.87
USP48-215ENST00000534705 LRRC37A2A6NM11 1700 aa3.36□□□□□ -1.87
USP48-215ENST00000534705 GPR75-ASB3A0A0A6YYF3 556 aa3.36□□□□□ -1.87
USP48-215ENST00000534705 FAM172BPA6NC97 362 aa3.36□□□□□ -1.87
USP48-215ENST00000534705 EIF3CLB5ME19 914 aaKnown RBP3.36□□□□□ -1.87
USP48-215ENST00000534705 TCP10L2B9ZVM9 353 aa3.36□□□□□ -1.87
USP48-215ENST00000534705 SPINT2O43291 252 aa3.36□□□□□ -1.87
USP48-215ENST00000534705 RPS6KA5O75582 802 aa3.36□□□□□ -1.87
USP48-215ENST00000534705 CCNDBP1O95273 360 aa3.36□□□□□ -1.87
USP48-215ENST00000534705 BAG4O95429 457 aaKnown RBP3.36□□□□□ -1.87
USP48-215ENST00000534705 IGLV2-11P01706 119 aa3.36□□□□□ -1.87
USP48-215ENST00000534705 CLEC3BP05452 202 aa3.36□□□□□ -1.87
USP48-215ENST00000534705 UQCRFS1P1P0C7P4 283 aa3.36□□□□□ -1.87
USP48-215ENST00000534705 UBL4AP11441 157 aa3.36□□□□□ -1.87
USP48-215ENST00000534705 HLA-DOBP13765 273 aa3.36□□□□□ -1.87
USP48-215ENST00000534705 UBA1P22314 1058 aaKnown RBP3.36□□□□□ -1.87
USP48-215ENST00000534705 TCEA1P23193 301 aaKnown RBP3.36□□□□□ -1.87
USP48-215ENST00000534705 CHMP24386 653 aa3.36□□□□□ -1.87
USP48-215ENST00000534705 OAS2P29728 719 aaKnown RBP3.36□□□□□ -1.87
USP48-215ENST00000534705 UBA7P41226 1012 aa3.36□□□□□ -1.87
USP48-215ENST00000534705 ARF3P61204 181 aaPredicted RBP3.36□□□□□ -1.87
USP48-215ENST00000534705 ARF1P84077 181 aaKnown RBP3.36□□□□□ -1.87
USP48-215ENST00000534705 MECOMQ03112 1051 aa3.36□□□□□ -1.87
USP48-215ENST00000534705 RELQ04864 619 aaPredicted RBP3.36□□□□□ -1.87
USP48-215ENST00000534705 FOXM1Q08050 763 aa3.36□□□□□ -1.87
USP48-215ENST00000534705 ACSM2AQ08AH3 577 aa3.36□□□□□ -1.87
USP48-215ENST00000534705 CSTF3Q12996 717 aaKnown RBP3.36□□□□□ -1.87
USP48-215ENST00000534705 TRDNQ13061 729 aa3.36□□□□□ -1.87
USP48-215ENST00000534705 DECR1Q16698 335 aa3.36□□□□□ -1.87
USP48-215ENST00000534705 COL28A1Q2UY09 1125 aa3.36□□□□□ -1.87
USP48-215ENST00000534705 ZSCAN23Q3MJ62 389 aa3.36□□□□□ -1.87
USP48-215ENST00000534705 GPATCH4Q5T3I0 446 aaKnown RBP3.36□□□□□ -1.87
USP48-215ENST00000534705 HIST2H2BDQ6DRA6 164 aa3.36□□□□□ -1.87
USP48-215ENST00000534705 BRAT1Q6PJG6 821 aa3.36□□□□□ -1.87
USP48-215ENST00000534705 R3HCC1LQ7Z5L2 792 aaKnown RBP3.36□□□□□ -1.87
USP48-215ENST00000534705 TMEM219Q86XT9 240 aa3.36□□□□□ -1.87
USP48-215ENST00000534705 KMT5CQ86Y97 462 aa3.36□□□□□ -1.87
USP48-215ENST00000534705 DCUN1D3Q8IWE4 304 aa3.36□□□□□ -1.87
USP48-215ENST00000534705 RNF113BQ8IZP6 322 aaKnown RBP3.36□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms