RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 PDILTQ8N807 584 aa3.86□□□□□ -1.79
CD44-235ENST00000532339 SAAL1Q96ER3 474 aa3.86□□□□□ -1.79
CD44-235ENST00000532339 TXNDC15Q96J42 360 aa3.86□□□□□ -1.79
CD44-235ENST00000532339 KLHL15Q96M94 604 aa3.86□□□□□ -1.79
CD44-235ENST00000532339 IL25Q9H293 177 aa3.86□□□□□ -1.79
CD44-235ENST00000532339 CCDC68Q9H2F9 335 aa3.86□□□□□ -1.79
CD44-235ENST00000532339 SH2D4AQ9H788 454 aa3.86□□□□□ -1.79
CD44-235ENST00000532339 ANKEF1Q9NU02 776 aa3.86□□□□□ -1.79
CD44-235ENST00000532339 SEPT11Q9NVA2 429 aaKnown RBP3.86□□□□□ -1.79
CD44-235ENST00000532339 GRHL1Q9NZI5 618 aa3.86□□□□□ -1.79
CD44-235ENST00000532339 FN1P02751 2386 aaKnown RBP3.86□□□□□ -1.79
CD44-235ENST00000532339 FLT1P17948 1338 aa3.86□□□□□ -1.79
CD44-235ENST00000532339 IL16Q14005 1332 aa3.86□□□□□ -1.79
CD44-235ENST00000532339 PLXNA4Q9HCM2 1894 aa3.86□□□□□ -1.79
CD44-235ENST00000532339 OR6C68A6NDL8 312 aa3.85□□□□□ -1.79
CD44-235ENST00000532339 TRABD2BA6NFA1 517 aa3.85□□□□□ -1.79
CD44-235ENST00000532339 KDM4EB2RXH2 506 aaPredicted RBP3.85□□□□□ -1.79
CD44-235ENST00000532339 TACC1O75410 805 aa3.85□□□□□ -1.79
CD44-235ENST00000532339 AKAP3O75969 853 aa3.85□□□□□ -1.79
CD44-235ENST00000532339 SEC14L2O76054 403 aa3.85□□□□□ -1.79
CD44-235ENST00000532339 LUC7L3O95232 432 aaKnown RBP3.85□□□□□ -1.79
CD44-235ENST00000532339 CCNDBP1O95273 360 aa3.85□□□□□ -1.79
CD44-235ENST00000532339 CAVIN2O95810 425 aa3.85□□□□□ -1.79
CD44-235ENST00000532339 HADHAP40939 763 aa3.85□□□□□ -1.79
CD44-235ENST00000532339 RARSP54136 660 aaKnown RBP3.85□□□□□ -1.79
CD44-235ENST00000532339 EIF3BP55884 814 aaKnown RBP3.85□□□□□ -1.79
CD44-235ENST00000532339 BNC1Q01954 994 aa3.85□□□□□ -1.79
CD44-235ENST00000532339 GRSF1Q12849 480 aaKnown RBP eCLIP3.85□□□□□ -1.79
CD44-235ENST00000532339 MAMLD1Q13495 774 aa3.85□□□□□ -1.79
CD44-235ENST00000532339 CUL4AQ13619 759 aa3.85□□□□□ -1.79
CD44-235ENST00000532339 SPOUT1Q5T280 376 aaKnown RBP3.85□□□□□ -1.79
CD44-235ENST00000532339 HIST2H2BCQ6DN03 193 aa3.85□□□□□ -1.79
CD44-235ENST00000532339 TPRG1Q6ZUI0 275 aa3.85□□□□□ -1.79
CD44-235ENST00000532339 ENOSF1Q7L5Y1 443 aa3.85□□□□□ -1.79
CD44-235ENST00000532339 RRM2BQ7LG56 351 aa3.85□□□□□ -1.79
CD44-235ENST00000532339 KBTBD6Q86V97 674 aa3.85□□□□□ -1.79
CD44-235ENST00000532339 OR8H2Q8N162 312 aa3.85□□□□□ -1.79
CD44-235ENST00000532339 RFLNBQ8N5W9 214 aa3.85□□□□□ -1.79
CD44-235ENST00000532339 NEXN-AS1Q8NBZ9 246 aa3.85□□□□□ -1.79
CD44-235ENST00000532339 HSPH1Q92598 858 aa3.85□□□□□ -1.79
CD44-235ENST00000532339 HES6Q96HZ4 224 aa3.85□□□□□ -1.79
CD44-235ENST00000532339 PLEKHF1Q96S99 279 aa3.85□□□□□ -1.79
CD44-235ENST00000532339 HEMGNQ9BXL5 484 aa3.85□□□□□ -1.79
CD44-235ENST00000532339 VCPKMTQ9H867 229 aa3.85□□□□□ -1.79
CD44-235ENST00000532339 SCPEP1Q9HB40 452 aa3.85□□□□□ -1.79
CD44-235ENST00000532339 WDR6Q9NNW5 1121 aaKnown RBP3.85□□□□□ -1.79
CD44-235ENST00000532339 EIF2B3Q9NR50 452 aaKnown RBP3.85□□□□□ -1.79
CD44-235ENST00000532339 C20orf141Q9NUB4 165 aa3.85□□□□□ -1.79
CD44-235ENST00000532339 IL1RAPL1Q9NZN1 696 aa3.85□□□□□ -1.79
CD44-235ENST00000532339 NLKQ9UBE8 527 aa3.85□□□□□ -1.79
CD44-235ENST00000532339 SLCO3A1Q9UIG8 710 aa3.85□□□□□ -1.79
CD44-235ENST00000532339 CLDN16Q9Y5I7 305 aa3.85□□□□□ -1.79
CD44-235ENST00000532339 PDS5AQ29RF7 1337 aaKnown RBP3.85□□□□□ -1.79
CD44-235ENST00000532339 BOD1L1Q8NFC6 3051 aa3.85□□□□□ -1.79
CD44-235ENST00000532339 ANKHD1Q8IWZ3 2542 aaKnown RBP3.85□□□□□ -1.79
CD44-235ENST00000532339 CKAP5Q14008 2032 aa3.85□□□□□ -1.79
CD44-235ENST00000532339 CACNA1DQ01668 2161 aa3.85□□□□□ -1.79
CD44-235ENST00000532339 MYH13Q9UKX3 1938 aa3.84□□□□□ -1.79
CD44-235ENST00000532339 PDZD2O15018 2839 aa3.84□□□□□ -1.79
CD44-235ENST00000532339 A0A1B0GVM2 712 aa3.84□□□□□ -1.79
CD44-235ENST00000532339 BCLAF3A2AJT9 711 aaKnown RBP3.84□□□□□ -1.79
CD44-235ENST00000532339 TARSL2A2RTX5 802 aaKnown RBP3.84□□□□□ -1.79
CD44-235ENST00000532339 LIPT2A6NK58 231 aa3.84□□□□□ -1.79
CD44-235ENST00000532339 IFNL4K9M1U5 179 aa3.84□□□□□ -1.79
CD44-235ENST00000532339 AP3D1O14617 1153 aa3.84□□□□□ -1.79
CD44-235ENST00000532339 BUB3O43684 328 aa3.84□□□□□ -1.79
CD44-235ENST00000532339 CBX6O95503 412 aa3.84□□□□□ -1.79
CD44-235ENST00000532339 BAG3O95817 575 aa3.84□□□□□ -1.79
CD44-235ENST00000532339 GALTP07902 379 aa3.84□□□□□ -1.79
CD44-235ENST00000532339 SPARCP09486 303 aa3.84□□□□□ -1.79
CD44-235ENST00000532339 STAG3L1P0CL83 205 aa3.84□□□□□ -1.79
CD44-235ENST00000532339 EPCAMP16422 314 aa3.84□□□□□ -1.79
CD44-235ENST00000532339 PORP16435 677 aaPredicted RBP3.84□□□□□ -1.79
CD44-235ENST00000532339 CASTP20810 708 aaKnown RBP3.84□□□□□ -1.79
CD44-235ENST00000532339 CPOXP36551 454 aa3.84□□□□□ -1.79
CD44-235ENST00000532339 PBX3P40426 434 aa3.84□□□□□ -1.79
CD44-235ENST00000532339 MXI1P50539 228 aa3.84□□□□□ -1.79
CD44-235ENST00000532339 BLKP51451 505 aa3.84□□□□□ -1.79
CD44-235ENST00000532339 DLX5P56178 289 aa3.84□□□□□ -1.79
CD44-235ENST00000532339 NLRP5P59047 1200 aa3.84□□□□□ -1.79
CD44-235ENST00000532339 ADORA2A-AS1P86434 159 aa3.84□□□□□ -1.79
CD44-235ENST00000532339 CREB5Q02930 508 aa3.84□□□□□ -1.79
CD44-235ENST00000532339 TMEM115Q12893 351 aaPredicted RBP3.84□□□□□ -1.79
CD44-235ENST00000532339 CTTNQ14247 550 aaKnown RBP3.84□□□□□ -1.79
CD44-235ENST00000532339 PPP2R5BQ15173 497 aa3.84□□□□□ -1.79
CD44-235ENST00000532339 ZRSR1Q15695 479 aaKnown RBP3.84□□□□□ -1.79
CD44-235ENST00000532339 TYW3Q6IPR3 259 aaKnown RBP3.84□□□□□ -1.79
CD44-235ENST00000532339 CDC73Q6P1J9 531 aa3.84□□□□□ -1.79
CD44-235ENST00000532339 IKBIPQ70UQ0 350 aa3.84□□□□□ -1.79
CD44-235ENST00000532339 GHDCQ8N2G8 530 aa3.84□□□□□ -1.79
CD44-235ENST00000532339 SPEM1Q8N4L4 309 aa3.84□□□□□ -1.79
CD44-235ENST00000532339 TTC39CQ8N584 583 aa3.84□□□□□ -1.79
CD44-235ENST00000532339 CADM4Q8NFZ8 388 aa3.84□□□□□ -1.79
CD44-235ENST00000532339 LILRB1Q8NHL6 650 aaPredicted RBP3.84□□□□□ -1.79
CD44-235ENST00000532339 NOC3LQ8WTT2 800 aaKnown RBP3.84□□□□□ -1.79
CD44-235ENST00000532339 ADGRG7Q96K78 797 aa3.84□□□□□ -1.79
CD44-235ENST00000532339 INPP4AQ96PE3 977 aaPredicted RBP3.84□□□□□ -1.79
CD44-235ENST00000532339 NPFFR1Q9GZQ6 430 aa3.84□□□□□ -1.79
CD44-235ENST00000532339 CXorf56Q9H5V9 222 aa3.84□□□□□ -1.79
CD44-235ENST00000532339 SNTG1Q9NSN8 517 aa3.84□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms