RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 PLEKHS1Q5SXH7 462 aa14.29□□□□□ -0.12
VPS28-215ENST00000531924 PRAMEF17Q5VTA0 474 aa14.29□□□□□ -0.12
VPS28-215ENST00000531924 CPZQ66K79 652 aa14.29□□□□□ -0.12
VPS28-215ENST00000531924 SYTL1Q8IYJ3 562 aa14.29□□□□□ -0.12
VPS28-215ENST00000531924 DSELQ8IZU8 1212 aa14.29□□□□□ -0.12
VPS28-215ENST00000531924 SLC38A9Q8NBW4 561 aa14.29□□□□□ -0.12
VPS28-215ENST00000531924 OR1L3Q8NH93 324 aa14.29□□□□□ -0.12
VPS28-215ENST00000531924 ELMO1Q92556 727 aa14.29□□□□□ -0.12
VPS28-215ENST00000531924 NLNQ9BYT8 704 aa14.29□□□□□ -0.12
VPS28-215ENST00000531924 PIH1D1Q9NWS0 290 aaKnown RBP14.29□□□□□ -0.12
VPS28-215ENST00000531924 IRAK4Q9NWZ3 460 aa14.29□□□□□ -0.12
VPS28-215ENST00000531924 ACTR10Q9NZ32 417 aa14.29□□□□□ -0.12
VPS28-215ENST00000531924 ANKMY1Q9P2S6 941 aa14.29□□□□□ -0.12
VPS28-215ENST00000531924 ASF1AQ9Y294 204 aa14.29□□□□□ -0.12
VPS28-215ENST00000531924 PADI2Q9Y2J8 665 aa14.29□□□□□ -0.12
VPS28-215ENST00000531924 TDRKHQ9Y2W6 561 aaKnown RBP14.29□□□□□ -0.12
VPS28-215ENST00000531924 REXO2Q9Y3B8 237 aaKnown RBP14.29□□□□□ -0.12
VPS28-215ENST00000531924 BSNQ9UPA5 3926 aa14.29□□□□□ -0.12
VPS28-215ENST00000531924 VPS4BO75351 444 aa14.28□□□□□ -0.12
VPS28-215ENST00000531924 FTCDO95954 541 aa14.28□□□□□ -0.12
VPS28-215ENST00000531924 OR56A5P0C7T3 313 aa14.28□□□□□ -0.12
VPS28-215ENST00000531924 PRSS56P0CW18 603 aa14.28□□□□□ -0.12
VPS28-215ENST00000531924 PVRP15151 417 aa14.28□□□□□ -0.12
VPS28-215ENST00000531924 ABRQ12979 859 aa14.28□□□□□ -0.12
VPS28-215ENST00000531924 ITIH4Q14624 930 aa14.28□□□□□ -0.12
VPS28-215ENST00000531924 BRD3Q15059 726 aa14.28□□□□□ -0.12
VPS28-215ENST00000531924 LYPLAL1Q5VWZ2 237 aa14.28□□□□□ -0.12
VPS28-215ENST00000531924 KCTD11Q693B1 232 aa14.28□□□□□ -0.12
VPS28-215ENST00000531924 PPP1R21Q6ZMI0 780 aa14.28□□□□□ -0.12
VPS28-215ENST00000531924 MIB2Q96AX9 1013 aa14.28□□□□□ -0.12
VPS28-215ENST00000531924 TRAPPC9Q96Q05 1148 aa14.28□□□□□ -0.12
VPS28-215ENST00000531924 C17orf62Q9BQA9 187 aa14.28□□□□□ -0.12
VPS28-215ENST00000531924 DPH2Q9BQC3 489 aaPredicted RBP14.28□□□□□ -0.12
VPS28-215ENST00000531924 TMEM121Q9BTD3 319 aa14.28□□□□□ -0.12
VPS28-215ENST00000531924 PITPNM3Q9BZ71 974 aa14.28□□□□□ -0.12
VPS28-215ENST00000531924 POLG2Q9UHN1 485 aa14.28□□□□□ -0.12
VPS28-215ENST00000531924 GPN3Q9UHW5 284 aaPredicted RBP14.28□□□□□ -0.12
VPS28-215ENST00000531924 TCFL5Q9UL49 500 aa14.28□□□□□ -0.12
VPS28-215ENST00000531924 VPS4AQ9UN37 437 aa14.28□□□□□ -0.12
VPS28-215ENST00000531924 PACSIN2Q9UNF0 486 aaPredicted RBP14.28□□□□□ -0.12
VPS28-215ENST00000531924 FLNCQ14315 2725 aa14.28□□□□□ -0.12
VPS28-215ENST00000531924 ZNF749O43361 778 aa14.27□□□□□ -0.13
VPS28-215ENST00000531924 TMEM63AO94886 807 aa14.27□□□□□ -0.13
VPS28-215ENST00000531924 MSL3P1P0C860 447 aa14.27□□□□□ -0.13
VPS28-215ENST00000531924 ATXN8OSP0DMR3 200 aa14.27□□□□□ -0.13
VPS28-215ENST00000531924 PTGIRP43119 386 aa14.27□□□□□ -0.13
VPS28-215ENST00000531924 RRADP55042 308 aa14.27□□□□□ -0.13
VPS28-215ENST00000531924 PLOD1Q02809 727 aaPredicted RBP14.27□□□□□ -0.13
VPS28-215ENST00000531924 CDH17Q12864 832 aa14.27□□□□□ -0.13
VPS28-215ENST00000531924 PTCHD3Q3KNS1 767 aa14.27□□□□□ -0.13
VPS28-215ENST00000531924 CCDC38Q502W7 563 aa14.27□□□□□ -0.13
VPS28-215ENST00000531924 SPESP1Q6UW49 350 aa14.27□□□□□ -0.13
VPS28-215ENST00000531924 ZNF517Q6ZMY9 492 aaPredicted RBP14.27□□□□□ -0.13
VPS28-215ENST00000531924 RAB43Q86YS6 212 aa14.27□□□□□ -0.13
VPS28-215ENST00000531924 KLHDC8BQ8IXV7 354 aa14.27□□□□□ -0.13
VPS28-215ENST00000531924 PIANPQ8IYJ0 282 aa14.27□□□□□ -0.13
VPS28-215ENST00000531924 FAM26EQ8N5C1 309 aa14.27□□□□□ -0.13
VPS28-215ENST00000531924 OR5AR1Q8NGP9 310 aa14.27□□□□□ -0.13
VPS28-215ENST00000531924 TCTN2Q96GX1 697 aa14.27□□□□□ -0.13
VPS28-215ENST00000531924 TSSK1BQ9BXA7 367 aa14.27□□□□□ -0.13
VPS28-215ENST00000531924 PCMTD2Q9NV79 361 aa14.27□□□□□ -0.13
VPS28-215ENST00000531924 R3HDM2Q9Y2K5 976 aaKnown RBP14.27□□□□□ -0.13
VPS28-215ENST00000531924 ZNF451Q9Y4E5 1061 aa14.27□□□□□ -0.13
VPS28-215ENST00000531924 PCDHGA9Q9Y5G4 932 aaKnown RBP14.27□□□□□ -0.13
VPS28-215ENST00000531924 COL12A1Q99715 3063 aa14.27□□□□□ -0.13
VPS28-215ENST00000531924 MAST4O15021 2626 aa14.26□□□□□ -0.13
VPS28-215ENST00000531924 CCDC162PA2VCL2 907 aa14.26□□□□□ -0.13
VPS28-215ENST00000531924 MROH6A6NGR9 719 aa14.26□□□□□ -0.13
VPS28-215ENST00000531924 A6NL46 340 aa14.26□□□□□ -0.13
VPS28-215ENST00000531924 ERI2A8K979 691 aaKnown RBP14.26□□□□□ -0.13
VPS28-215ENST00000531924 OR2B3O76000 313 aa14.26□□□□□ -0.13
VPS28-215ENST00000531924 IFNB1P01574 187 aa14.26□□□□□ -0.13
VPS28-215ENST00000531924 PDGFAP04085 211 aa14.26□□□□□ -0.13
VPS28-215ENST00000531924 STIP1P31948 543 aaKnown RBP14.26□□□□□ -0.13
VPS28-215ENST00000531924 RORAP35398 523 aa14.26□□□□□ -0.13
VPS28-215ENST00000531924 PPARGP37231 505 aaPredicted RBP14.26□□□□□ -0.13
VPS28-215ENST00000531924 GDF10P55107 478 aa14.26□□□□□ -0.13
VPS28-215ENST00000531924 NCF4Q15080 339 aa14.26□□□□□ -0.13
VPS28-215ENST00000531924 SEL1L2Q5TEA6 688 aa14.26□□□□□ -0.13
VPS28-215ENST00000531924 LCN10Q6JVE6 187 aa14.26□□□□□ -0.13
VPS28-215ENST00000531924 PACS1Q6VY07 963 aa14.26□□□□□ -0.13
VPS28-215ENST00000531924 UNC5AQ6ZN44 842 aa14.26□□□□□ -0.13
VPS28-215ENST00000531924 CDHR3Q6ZTQ4 885 aa14.26□□□□□ -0.13
VPS28-215ENST00000531924 TBC1D21Q8IYX1 336 aa14.26□□□□□ -0.13
VPS28-215ENST00000531924 ADGRF3Q8IZF5 1079 aa14.26□□□□□ -0.13
VPS28-215ENST00000531924 C19orf47Q8N9M1 422 aaKnown RBP14.26□□□□□ -0.13
VPS28-215ENST00000531924 OR52K1Q8NGK4 314 aa14.26□□□□□ -0.13
VPS28-215ENST00000531924 OR6P1Q8NGX9 317 aa14.26□□□□□ -0.13
VPS28-215ENST00000531924 SLC35B2Q8TB61 432 aa14.26□□□□□ -0.13
VPS28-215ENST00000531924 RBSNQ9H1K0 784 aa14.26□□□□□ -0.13
VPS28-215ENST00000531924 OR6C2Q9NZP2 312 aa14.26□□□□□ -0.13
VPS28-215ENST00000531924 MAP10Q9P2G4 905 aa14.26□□□□□ -0.13
VPS28-215ENST00000531924 IMPACTQ9P2X3 320 aa14.26□□□□□ -0.13
VPS28-215ENST00000531924 ICKQ9UPZ9 632 aa14.26□□□□□ -0.13
VPS28-215ENST00000531924 AP1M2Q9Y6Q5 423 aa14.26□□□□□ -0.13
VPS28-215ENST00000531924 HEATR9A2RTY3 570 aa14.25□□□□□ -0.13
VPS28-215ENST00000531924 OR51F1A6NGY5 319 aa14.25□□□□□ -0.13
VPS28-215ENST00000531924 ISM1B1AKI9 464 aa14.25□□□□□ -0.13
VPS28-215ENST00000531924 ZNF185O15231 689 aa14.25□□□□□ -0.13
VPS28-215ENST00000531924 CHRM5P08912 532 aaPredicted RBP14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms