RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 DUXAA6NLW8 204 aa11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 MRPS14O60783 128 aaKnown RBP11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 RCBTB2O95199 551 aa11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 COL6A1P12109 1028 aa11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 CPN2P22792 545 aa11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 UQCRC1P31930 480 aa11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 CYCSP99999 105 aaKnown RBP11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 DSG2Q14126 1118 aa11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 SCARF1Q14162 830 aa11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 GNMTQ14749 295 aa11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 SYNPOQ8N3V7 929 aa11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 CHCHD4Q8N4Q1 142 aa11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 ISOC1Q96CN7 298 aa11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 TSSK3Q96PN8 268 aa11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 ZNF649Q9BS31 505 aa11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 CEP41Q9BYV8 373 aa11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 NELFAQ9H3P2 528 aa11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 TVP23BQ9NYZ1 205 aa11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 SLAIN2Q9P270 581 aa11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 TNFRSF10DQ9UBN6 386 aa11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 NDOR1Q9UHB4 597 aa11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 AXIN2Q9Y2T1 843 aa11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 TLR4O00206 839 aa11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 HPRP00739 348 aa11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 AOC1P19801 751 aa11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 IMPDH1P20839 514 aa11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 VAMP1P23763 118 aa11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 HTR2BP41595 481 aa11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 NRIP1P48552 1158 aa11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 KHKP50053 298 aa11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 HMGCS2P54868 508 aa11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 TLE3Q04726 772 aa11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 EXOC3L2Q2M3D2 409 aa11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 RAB41Q5JT25 222 aa11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 STRADAQ7RTN6 431 aa11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 GALNT7Q86SF2 657 aa11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 TMEM199Q8N511 208 aa11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 ZNF676Q8N7Q3 588 aa11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 WDSUB1Q8N9V3 476 aa11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 BEST4Q8NFU0 473 aa11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 RIOX1Q9H6W3 641 aa11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 GFOD1Q9NXC2 390 aa11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 PAQR5Q9NXK6 330 aaPredicted RBP11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 GPR75-ASB3A0A0A6YYF3 556 aa11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 NT5C1B-RDH14C9J2C7 533 aa11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 E5RJQ4 531 aa11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 RPP40O75818 363 aaKnown RBP11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 CSF1RP07333 972 aa11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 ZNF182P17025 639 aaPredicted RBP11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 RPL35P42766 123 aaKnown RBP11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 XKP51811 444 aa11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 PPP5CP53041 499 aa11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 TLE2Q04725 743 aa11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 CLCQ05315 142 aa11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 RALGPS2Q86X27 583 aaPredicted RBP11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 GEMIN6Q8WXD5 167 aaKnown RBP11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 LURAP1Q96LR2 239 aa11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 APOLD1Q96LR9 279 aa11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 CRAMP1Q96RY5 1269 aa11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 GON7Q9BXV9 100 aa11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 ZIM2Q9NZV7 527 aa11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 SH2B3Q9UQQ2 575 aa11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 HSPE1-MOB4S4R3N1 261 aa11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 LMTK3Q96Q04 1460 aa11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 OIP5O43482 229 aa11.04□□□□□ -0.64
LIMCH1-208ENST00000508501 CD86P42081 329 aa11.04□□□□□ -0.64
LIMCH1-208ENST00000508501 TLR1Q15399 786 aa11.04□□□□□ -0.64
LIMCH1-208ENST00000508501 HECTD2Q5U5R9 776 aa11.04□□□□□ -0.64
LIMCH1-208ENST00000508501 OR2T5Q6IEZ7 315 aa11.04□□□□□ -0.64
LIMCH1-208ENST00000508501 SLC27A1Q6PCB7 646 aa11.04□□□□□ -0.64
LIMCH1-208ENST00000508501 DGLUCYQ7Z3D6 616 aa11.04□□□□□ -0.64
LIMCH1-208ENST00000508501 BANPQ8N9N5 519 aa11.04□□□□□ -0.64
LIMCH1-208ENST00000508501 OR2T29Q8NH02 315 aa11.04□□□□□ -0.64
LIMCH1-208ENST00000508501 MALSU1Q96EH3 234 aa11.04□□□□□ -0.64
LIMCH1-208ENST00000508501 ELAC1Q9H777 363 aaKnown RBP11.04□□□□□ -0.64
LIMCH1-208ENST00000508501 BRD9Q9H8M2 597 aa11.04□□□□□ -0.64
LIMCH1-208ENST00000508501 EIF2B3Q9NR50 452 aaKnown RBP11.04□□□□□ -0.64
LIMCH1-208ENST00000508501 SAGE1Q9NXZ1 904 aa11.04□□□□□ -0.64
LIMCH1-208ENST00000508501 MALT1Q9UDY8 824 aa11.04□□□□□ -0.64
LIMCH1-208ENST00000508501 NME7Q9Y5B8 376 aa11.04□□□□□ -0.64
LIMCH1-208ENST00000508501 TEX13DA0A0J9YY54 714 aaPredicted RBP11.04□□□□□ -0.64
LIMCH1-208ENST00000508501 CIB4A0PJX0 185 aa11.04□□□□□ -0.64
LIMCH1-208ENST00000508501 CREBL2O60519 120 aaPredicted RBP11.04□□□□□ -0.64
LIMCH1-208ENST00000508501 ZNF20P17024 532 aa11.04□□□□□ -0.64
LIMCH1-208ENST00000508501 SLC2A5P22732 501 aa11.04□□□□□ -0.64
LIMCH1-208ENST00000508501 GSTM2P28161 218 aa11.04□□□□□ -0.64
LIMCH1-208ENST00000508501 DLSTP36957 453 aa11.04□□□□□ -0.64
LIMCH1-208ENST00000508501 ETV6P41212 452 aa11.04□□□□□ -0.64
LIMCH1-208ENST00000508501 RARRES1P49788 294 aa11.04□□□□□ -0.64
LIMCH1-208ENST00000508501 S100A10P60903 97 aa11.04□□□□□ -0.64
LIMCH1-208ENST00000508501 MTMR2Q13614 643 aa11.04□□□□□ -0.64
LIMCH1-208ENST00000508501 MIIPQ5JXC2 388 aa11.04□□□□□ -0.64
LIMCH1-208ENST00000508501 FAM46CQ5VWP2 391 aa11.04□□□□□ -0.64
LIMCH1-208ENST00000508501 ZNF572Q7Z3I7 529 aaPredicted RBP11.04□□□□□ -0.64
LIMCH1-208ENST00000508501 MARVELD2Q8N4S9 558 aa11.04□□□□□ -0.64
LIMCH1-208ENST00000508501 GPR156Q8NFN8 814 aa11.04□□□□□ -0.64
LIMCH1-208ENST00000508501 XAGE5Q8WWM1 108 aa11.04□□□□□ -0.64
LIMCH1-208ENST00000508501 FCAMRQ8WWV6 532 aa11.04□□□□□ -0.64
LIMCH1-208ENST00000508501 MKRN2Q9H000 416 aaKnown RBP11.04□□□□□ -0.64
LIMCH1-208ENST00000508501 FN3KQ9H479 309 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms