RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 ART1P52961 327 aa3.96□□□□□ -1.78
USP54-217ENST00000498213 MFAP3P55082 362 aa3.96□□□□□ -1.78
USP54-217ENST00000498213 HDAC4P56524 1084 aa3.96□□□□□ -1.78
USP54-217ENST00000498213 YWHAEP62258 255 aaKnown RBP3.96□□□□□ -1.78
USP54-217ENST00000498213 CYP24A1Q07973 514 aa3.96□□□□□ -1.78
USP54-217ENST00000498213 CNN3Q15417 329 aaKnown RBP3.96□□□□□ -1.78
USP54-217ENST00000498213 DEFB109BQ30KR1 87 aa3.96□□□□□ -1.78
USP54-217ENST00000498213 ZNF699Q32M78 642 aa3.96□□□□□ -1.78
USP54-217ENST00000498213 MDH1BQ5I0G3 518 aa3.96□□□□□ -1.78
USP54-217ENST00000498213 CEP78Q5JTW2 689 aa3.96□□□□□ -1.78
USP54-217ENST00000498213 NUGGCQ68CJ6 796 aa3.96□□□□□ -1.78
USP54-217ENST00000498213 FCRL6Q6DN72 434 aa3.96□□□□□ -1.78
USP54-217ENST00000498213 PM20D1Q6GTS8 502 aa3.96□□□□□ -1.78
USP54-217ENST00000498213 RBM44Q6ZP01 1051 aaKnown RBP3.96□□□□□ -1.78
USP54-217ENST00000498213 ASB18Q6ZVZ8 466 aa3.96□□□□□ -1.78
USP54-217ENST00000498213 UNC13DQ70J99 1090 aa3.96□□□□□ -1.78
USP54-217ENST00000498213 DSG4Q86SJ6 1040 aa3.96□□□□□ -1.78
USP54-217ENST00000498213 TMEM25Q86YD3 366 aa3.96□□□□□ -1.78
USP54-217ENST00000498213 CCDC117Q8IWD4 279 aaPredicted RBP3.96□□□□□ -1.78
USP54-217ENST00000498213 BBS7Q8IWZ6 715 aa3.96□□□□□ -1.78
USP54-217ENST00000498213 SDR16C5Q8N3Y7 309 aa3.96□□□□□ -1.78
USP54-217ENST00000498213 GALNT4Q8N4A0 578 aa3.96□□□□□ -1.78
USP54-217ENST00000498213 DNAJB14Q8TBM8 379 aa3.96□□□□□ -1.78
USP54-217ENST00000498213 PARD3BQ8TEW8 1205 aa3.96□□□□□ -1.78
USP54-217ENST00000498213 IRGQQ8WZA9 623 aa3.96□□□□□ -1.78
USP54-217ENST00000498213 CCDC47Q96A33 483 aaKnown RBP3.96□□□□□ -1.78
USP54-217ENST00000498213 JAKMIP2Q96AA8 810 aa3.96□□□□□ -1.78
USP54-217ENST00000498213 FAM131CQ96AQ9 280 aa3.96□□□□□ -1.78
USP54-217ENST00000498213 P2RY11Q96G91 374 aa3.96□□□□□ -1.78
USP54-217ENST00000498213 PIWIL1Q96J94 861 aaKnown RBP3.96□□□□□ -1.78
USP54-217ENST00000498213 FAM81BQ96LP2 452 aa3.96□□□□□ -1.78
USP54-217ENST00000498213 APOLD1Q96LR9 279 aa3.96□□□□□ -1.78
USP54-217ENST00000498213 TBATAQ96M53 351 aa3.96□□□□□ -1.78
USP54-217ENST00000498213 ZNF396Q96N95 335 aaPredicted RBP3.96□□□□□ -1.78
USP54-217ENST00000498213 FYTTD1Q96QD9 318 aaKnown RBP3.96□□□□□ -1.78
USP54-217ENST00000498213 SNX18Q96RF0 628 aa3.96□□□□□ -1.78
USP54-217ENST00000498213 CBWD1Q9BRT8 395 aa3.96□□□□□ -1.78
USP54-217ENST00000498213 QTRT1Q9BXR0 403 aaKnown RBP3.96□□□□□ -1.78
USP54-217ENST00000498213 B3GNT4Q9C0J1 378 aa3.96□□□□□ -1.78
USP54-217ENST00000498213 LHX5Q9H2C1 402 aa3.96□□□□□ -1.78
USP54-217ENST00000498213 RETREG1Q9H6L5 497 aa3.96□□□□□ -1.78
USP54-217ENST00000498213 EBF2Q9HAK2 575 aa3.96□□□□□ -1.78
USP54-217ENST00000498213 EPB41L5Q9HCM4 733 aa3.96□□□□□ -1.78
USP54-217ENST00000498213 PREBQ9HCU5 417 aa3.96□□□□□ -1.78
USP54-217ENST00000498213 MTPAPQ9NVV4 582 aaKnown RBP eCLIP3.96□□□□□ -1.78
USP54-217ENST00000498213 ELOVL2Q9NXB9 296 aa3.96□□□□□ -1.78
USP54-217ENST00000498213 LUZP4Q9P127 313 aa3.96□□□□□ -1.78
USP54-217ENST00000498213 PISDQ9UG56 409 aa3.96□□□□□ -1.78
USP54-217ENST00000498213 FBXO2Q9UK22 296 aaPredicted RBP3.96□□□□□ -1.78
USP54-217ENST00000498213 TRAF3IP3Q9Y228 551 aa3.96□□□□□ -1.78
USP54-217ENST00000498213 PCDHGB6Q9Y5F9 930 aa3.96□□□□□ -1.78
USP54-217ENST00000498213 DENND4CQ5VZ89 1909 aa3.95□□□□□ -1.78
USP54-217ENST00000498213 TLN2Q9Y4G6 2542 aa3.95□□□□□ -1.78
USP54-217ENST00000498213 A0A1W2PPC4 97 aa3.95□□□□□ -1.78
USP54-217ENST00000498213 HEATR9A2RTY3 570 aa3.95□□□□□ -1.78
USP54-217ENST00000498213 MBD3L4A6NDZ8 208 aaPredicted RBP3.95□□□□□ -1.78
USP54-217ENST00000498213 MBD3L3A6NE82 208 aaPredicted RBP3.95□□□□□ -1.78
USP54-217ENST00000498213 NEMP2A6NFY4 417 aa3.95□□□□□ -1.78
USP54-217ENST00000498213 NEDD8-MDP1E9PL57 170 aa3.95□□□□□ -1.78
USP54-217ENST00000498213 TLR4O00206 839 aa3.95□□□□□ -1.78
USP54-217ENST00000498213 PMM2O15305 246 aa3.95□□□□□ -1.78
USP54-217ENST00000498213 LATO43561 262 aa3.95□□□□□ -1.78
USP54-217ENST00000498213 DUX1O43812 170 aa3.95□□□□□ -1.78
USP54-217ENST00000498213 CNTN5O94779 1100 aa3.95□□□□□ -1.78
USP54-217ENST00000498213 MOCS3O95396 460 aa3.95□□□□□ -1.78
USP54-217ENST00000498213 DNTTP04053 509 aa3.95□□□□□ -1.78
USP54-217ENST00000498213 IGHV4-34P06331 123 aa3.95□□□□□ -1.78
USP54-217ENST00000498213 SETSIPP0DME0 302 aa3.95□□□□□ -1.78
USP54-217ENST00000498213 DLATP10515 647 aaKnown RBP3.95□□□□□ -1.78
USP54-217ENST00000498213 ITIH1P19827 911 aa3.95□□□□□ -1.78
USP54-217ENST00000498213 TBXAS1P24557 533 aaPredicted RBP3.95□□□□□ -1.78
USP54-217ENST00000498213 ACAT1P24752 427 aaKnown RBP3.95□□□□□ -1.78
USP54-217ENST00000498213 FPR3P25089 353 aa3.95□□□□□ -1.78
USP54-217ENST00000498213 GJB2P29033 226 aa3.95□□□□□ -1.78
USP54-217ENST00000498213 NNMTP40261 264 aa3.95□□□□□ -1.78
USP54-217ENST00000498213 PPP1R2P41236 205 aa3.95□□□□□ -1.78
USP54-217ENST00000498213 LEPRP48357 1165 aaKnown RBP3.95□□□□□ -1.78
USP54-217ENST00000498213 RENBPP51606 427 aa3.95□□□□□ -1.78
USP54-217ENST00000498213 COPAP53621 1224 aa3.95□□□□□ -1.78
USP54-217ENST00000498213 ITGA8P53708 1063 aa3.95□□□□□ -1.78
USP54-217ENST00000498213 SUMO3P55854 103 aaPredicted RBP3.95□□□□□ -1.78
USP54-217ENST00000498213 SNX16P57768 344 aa3.95□□□□□ -1.78
USP54-217ENST00000498213 ST8SIA6P61647 398 aa3.95□□□□□ -1.78
USP54-217ENST00000498213 EIF3IQ13347 325 aaKnown RBP3.95□□□□□ -1.78
USP54-217ENST00000498213 CUL4AQ13619 759 aa3.95□□□□□ -1.78
USP54-217ENST00000498213 ELAVL3Q14576 367 aaKnown RBP3.95□□□□□ -1.78
USP54-217ENST00000498213 DRAP1Q14919 205 aaPredicted RBP3.95□□□□□ -1.78
USP54-217ENST00000498213 INPP5JQ15735 1006 aaPredicted RBP3.95□□□□□ -1.78
USP54-217ENST00000498213 ETFDHQ16134 617 aa3.95□□□□□ -1.78
USP54-217ENST00000498213 CDKN3Q16667 212 aa3.95□□□□□ -1.78
USP54-217ENST00000498213 CYP1B1Q16678 543 aa3.95□□□□□ -1.78
USP54-217ENST00000498213 PTCHD3Q3KNS1 767 aa3.95□□□□□ -1.78
USP54-217ENST00000498213 NADK2Q4G0N4 442 aa3.95□□□□□ -1.78
USP54-217ENST00000498213 C14orf28Q4W4Y0 310 aa3.95□□□□□ -1.78
USP54-217ENST00000498213 RAB41Q5JT25 222 aa3.95□□□□□ -1.78
USP54-217ENST00000498213 FAM46CQ5VWP2 391 aa3.95□□□□□ -1.78
USP54-217ENST00000498213 TMEM198Q66K66 360 aa3.95□□□□□ -1.78
USP54-217ENST00000498213 ZNF776Q68DI1 518 aaPredicted RBP3.95□□□□□ -1.78
USP54-217ENST00000498213 ARHGAP17Q68EM7 881 aa3.95□□□□□ -1.78
USP54-217ENST00000498213 SLC2A7Q6PXP3 512 aa3.95□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms