RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 R3HCC1LQ7Z5L2 792 aaKnown RBP16.03■□□□□ 0.16
CCDC88B-209ENST00000494080 ZBTB2Q8N680 514 aa16.03■□□□□ 0.16
CCDC88B-209ENST00000494080 OR10A6Q8NH74 314 aa16.03■□□□□ 0.16
CCDC88B-209ENST00000494080 RNFT2Q96EX2 444 aa16.03■□□□□ 0.16
CCDC88B-209ENST00000494080 ZNF347Q96SE7 839 aa16.03■□□□□ 0.16
CCDC88B-209ENST00000494080 TOR3AQ9H497 397 aa16.03■□□□□ 0.16
CCDC88B-209ENST00000494080 AKTIPQ9H8T0 292 aa16.03■□□□□ 0.16
CCDC88B-209ENST00000494080 AMBNQ9NP70 447 aa16.03■□□□□ 0.16
CCDC88B-209ENST00000494080 TMLHEQ9NVH6 421 aa16.03■□□□□ 0.16
CCDC88B-209ENST00000494080 DDX60LQ5H9U9 1706 aaKnown RBP16.03■□□□□ 0.16
CCDC88B-209ENST00000494080 IFNA14P01570 189 aa16.03■□□□□ 0.16
CCDC88B-209ENST00000494080 PFKMP08237 780 aa16.03■□□□□ 0.16
CCDC88B-209ENST00000494080 PMS2P3Q13401 168 aa16.03■□□□□ 0.16
CCDC88B-209ENST00000494080 TAF1AQ15573 450 aaPredicted RBP16.03■□□□□ 0.16
CCDC88B-209ENST00000494080 MEP1AQ16819 746 aa16.03■□□□□ 0.16
CCDC88B-209ENST00000494080 RABL3Q5HYI8 236 aa16.03■□□□□ 0.16
CCDC88B-209ENST00000494080 RBM48Q5RL73 367 aaKnown RBP16.03■□□□□ 0.16
CCDC88B-209ENST00000494080 REM2Q8IYK8 340 aaPredicted RBP16.03■□□□□ 0.16
CCDC88B-209ENST00000494080 ASZ1Q8WWH4 475 aa16.03■□□□□ 0.16
CCDC88B-209ENST00000494080 WRAP53Q9BUR4 548 aaKnown RBP16.03■□□□□ 0.16
CCDC88B-209ENST00000494080 FAM83DQ9H4H8 585 aa16.03■□□□□ 0.16
CCDC88B-209ENST00000494080 KCTD5Q9NXV2 234 aa16.03■□□□□ 0.16
CCDC88B-209ENST00000494080 DEC1Q9P2X7 70 aa16.03■□□□□ 0.16
CCDC88B-209ENST00000494080 PCDHGA4Q9Y5G9 962 aa16.03■□□□□ 0.16
CCDC88B-209ENST00000494080 ELOVL7A1L3X0 281 aa16.02■□□□□ 0.16
CCDC88B-209ENST00000494080 SLC28A1O00337 649 aa16.02■□□□□ 0.16
CCDC88B-209ENST00000494080 ABCB7O75027 752 aa16.02■□□□□ 0.16
CCDC88B-209ENST00000494080 RAP2AP10114 183 aa16.02■□□□□ 0.16
CCDC88B-209ENST00000494080 HAPLN1P10915 354 aaPredicted RBP16.02■□□□□ 0.16
CCDC88B-209ENST00000494080 SLC16A1P53985 500 aa16.02■□□□□ 0.16
CCDC88B-209ENST00000494080 PRKAG1P54619 331 aa16.02■□□□□ 0.16
CCDC88B-209ENST00000494080 FBXW4P57775 412 aa16.02■□□□□ 0.16
CCDC88B-209ENST00000494080 NFATC3Q12968 1075 aa16.02■□□□□ 0.16
CCDC88B-209ENST00000494080 PHKG1Q16816 387 aa16.02■□□□□ 0.16
CCDC88B-209ENST00000494080 KLHL12Q53G59 568 aa16.02■□□□□ 0.16
CCDC88B-209ENST00000494080 MZT2BQ6NZ67 158 aa16.02■□□□□ 0.16
CCDC88B-209ENST00000494080 HDDC2Q7Z4H3 204 aa16.02■□□□□ 0.16
CCDC88B-209ENST00000494080 PIK3C3Q8NEB9 887 aa16.02■□□□□ 0.16
CCDC88B-209ENST00000494080 REPS1Q96D71 796 aa16.02■□□□□ 0.16
CCDC88B-209ENST00000494080 CXCL16Q9H2A7 254 aa16.02■□□□□ 0.16
CCDC88B-209ENST00000494080 SP140LQ9H930 580 aa16.02■□□□□ 0.16
CCDC88B-209ENST00000494080 PDP1Q9P0J1 537 aaPredicted RBP16.02■□□□□ 0.16
CCDC88B-209ENST00000494080 A8MT66 165 aa16.02■□□□□ 0.16
CCDC88B-209ENST00000494080 SOCS2O14508 198 aa16.02■□□□□ 0.16
CCDC88B-209ENST00000494080 RFXANKO14593 260 aa16.02■□□□□ 0.16
CCDC88B-209ENST00000494080 NBNO60934 754 aa16.02■□□□□ 0.16
CCDC88B-209ENST00000494080 ALDH1A2O94788 518 aa16.02■□□□□ 0.16
CCDC88B-209ENST00000494080 SEMA3DO95025 777 aa16.02■□□□□ 0.16
CCDC88B-209ENST00000494080 ESR1P03372 595 aa16.02■□□□□ 0.16
CCDC88B-209ENST00000494080 OGNP20774 298 aaKnown RBP16.02■□□□□ 0.16
CCDC88B-209ENST00000494080 HPCAL1P37235 193 aa16.02■□□□□ 0.16
CCDC88B-209ENST00000494080 GNPDA1P46926 289 aa16.02■□□□□ 0.16
CCDC88B-209ENST00000494080 OR2B6P58173 313 aa16.02■□□□□ 0.16
CCDC88B-209ENST00000494080 SRP54P61011 504 aaKnown RBP16.02■□□□□ 0.16
CCDC88B-209ENST00000494080 LRRTM3Q86VH5 581 aa16.02■□□□□ 0.16
CCDC88B-209ENST00000494080 SLC7A5P1Q8MH63 180 aa16.02■□□□□ 0.16
CCDC88B-209ENST00000494080 TRIM8Q9BZR9 551 aa16.02■□□□□ 0.16
CCDC88B-209ENST00000494080 RPS6KA6Q9UK32 745 aa16.02■□□□□ 0.16
CCDC88B-209ENST00000494080 TLL2Q9Y6L7 1015 aa16.02■□□□□ 0.16
CCDC88B-209ENST00000494080 BTN3A3O00478 584 aa16.02■□□□□ 0.15
CCDC88B-209ENST00000494080 PTGER3P43115 390 aa16.02■□□□□ 0.15
CCDC88B-209ENST00000494080 BMXP51813 675 aa16.02■□□□□ 0.15
CCDC88B-209ENST00000494080 TMBIM6P55061 237 aa16.02■□□□□ 0.15
CCDC88B-209ENST00000494080 IL18R1Q13478 541 aa16.02■□□□□ 0.15
CCDC88B-209ENST00000494080 PPP1R3AQ16821 1122 aa16.02■□□□□ 0.15
CCDC88B-209ENST00000494080 MTSS1LQ765P7 747 aa16.02■□□□□ 0.15
CCDC88B-209ENST00000494080 RAVER1Q8IY67 606 aaKnown RBP16.02■□□□□ 0.15
CCDC88B-209ENST00000494080 UBE2J2Q8N2K1 259 aa16.02■□□□□ 0.15
CCDC88B-209ENST00000494080 DHRS4Q9BTZ2 278 aa16.02■□□□□ 0.15
CCDC88B-209ENST00000494080 SCN7AQ01118 1682 aa16.02■□□□□ 0.15
CCDC88B-209ENST00000494080 MYO7AQ13402 2215 aa16.02■□□□□ 0.15
CCDC88B-209ENST00000494080 ZNF487B1APH4 448 aa16.02■□□□□ 0.15
CCDC88B-209ENST00000494080 SERPINA1P01009 418 aa16.02■□□□□ 0.15
CCDC88B-209ENST00000494080 GALTP07902 379 aa16.02■□□□□ 0.15
CCDC88B-209ENST00000494080 PCSK6P29122 969 aa16.02■□□□□ 0.15
CCDC88B-209ENST00000494080 INHBCP55103 352 aa16.02■□□□□ 0.15
CCDC88B-209ENST00000494080 CLDN19Q8N6F1 224 aa16.02■□□□□ 0.15
CCDC88B-209ENST00000494080 ITM2CQ9NQX7 267 aa16.02■□□□□ 0.15
CCDC88B-209ENST00000494080 GIMAP2Q9UG22 337 aa16.02■□□□□ 0.15
CCDC88B-209ENST00000494080 C1QTNF3-AMACRE9PGA6 284 aa16.01■□□□□ 0.15
CCDC88B-209ENST00000494080 OXSR1O95747 527 aaPredicted RBP16.01■□□□□ 0.15
CCDC88B-209ENST00000494080 ITIH1P19827 911 aa16.01■□□□□ 0.15
CCDC88B-209ENST00000494080 NPTX1Q15818 432 aa16.01■□□□□ 0.15
CCDC88B-209ENST00000494080 DCDC5Q6ZRR9 648 aa16.01■□□□□ 0.15
CCDC88B-209ENST00000494080 AP2M1Q96CW1 435 aa16.01■□□□□ 0.15
CCDC88B-209ENST00000494080 CDK15Q96Q40 435 aa16.01■□□□□ 0.15
CCDC88B-209ENST00000494080 TDRD1Q9BXT4 1180 aaKnown RBP16.01■□□□□ 0.15
CCDC88B-209ENST00000494080 C20orf27Q9GZN8 174 aa16.01■□□□□ 0.15
CCDC88B-209ENST00000494080 ILVBLA1L0T0 632 aa16.01■□□□□ 0.15
CCDC88B-209ENST00000494080 SLC10A3P09131 477 aa16.01■□□□□ 0.15
CCDC88B-209ENST00000494080 PIGFQ07326 219 aa16.01■□□□□ 0.15
CCDC88B-209ENST00000494080 NAE1Q13564 534 aa16.01■□□□□ 0.15
CCDC88B-209ENST00000494080 FAM131AQ6UXB0 335 aa16.01■□□□□ 0.15
CCDC88B-209ENST00000494080 LYSMD3Q7Z3D4 306 aa16.01■□□□□ 0.15
CCDC88B-209ENST00000494080 TCAIMQ8N3R3 496 aa16.01■□□□□ 0.15
CCDC88B-209ENST00000494080 ZNF461Q8TAF7 563 aa16.01■□□□□ 0.15
CCDC88B-209ENST00000494080 SH3RF2Q8TEC5 729 aa16.01■□□□□ 0.15
CCDC88B-209ENST00000494080 ITPKCQ96DU7 683 aa16.01■□□□□ 0.15
CCDC88B-209ENST00000494080 VPS35Q96QK1 796 aa16.01■□□□□ 0.15
CCDC88B-209ENST00000494080 DCSTAMPQ9H295 470 aa16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms