RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 CASP2P42575 452 aa20.64■□□□□ 0.89
CCDC88B-208ENST00000492980 SP140Q13342 867 aa20.64■□□□□ 0.89
CCDC88B-208ENST00000492980 SMU1Q2TAY7 513 aa20.64■□□□□ 0.89
CCDC88B-208ENST00000492980 LCN8Q6JVE9 175 aa20.64■□□□□ 0.89
CCDC88B-208ENST00000492980 SLC2A7Q6PXP3 512 aa20.64■□□□□ 0.89
CCDC88B-208ENST00000492980 LRRC70Q7Z2Q7 622 aa20.64■□□□□ 0.89
CCDC88B-208ENST00000492980 TECPR1Q7Z6L1 1165 aa20.64■□□□□ 0.89
CCDC88B-208ENST00000492980 DPP10Q8N608 796 aa20.64■□□□□ 0.89
CCDC88B-208ENST00000492980 HCAR2Q8TDS4 363 aa20.64■□□□□ 0.89
CCDC88B-208ENST00000492980 SMG7Q92540 1137 aaKnown RBP20.64■□□□□ 0.89
CCDC88B-208ENST00000492980 ZSCAN5AQ9BUG6 496 aa20.64■□□□□ 0.89
CCDC88B-208ENST00000492980 TRIM15Q9C019 465 aa20.64■□□□□ 0.89
CCDC88B-208ENST00000492980 EGFL7Q9UHF1 273 aa20.64■□□□□ 0.89
CCDC88B-208ENST00000492980 CNOT6Q9ULM6 557 aaKnown RBP20.64■□□□□ 0.89
CCDC88B-208ENST00000492980 AQP12BA6NM10 295 aa20.63■□□□□ 0.89
CCDC88B-208ENST00000492980 GFYI3L273 518 aa20.63■□□□□ 0.89
CCDC88B-208ENST00000492980 KPNA5O15131 536 aa20.63■□□□□ 0.89
CCDC88B-208ENST00000492980 SLC16A5O15375 505 aa20.63■□□□□ 0.89
CCDC88B-208ENST00000492980 ADH1CP00326 375 aa20.63■□□□□ 0.89
CCDC88B-208ENST00000492980 GSK3BP49841 420 aa20.63■□□□□ 0.89
CCDC88B-208ENST00000492980 LBX1P52954 281 aa20.63■□□□□ 0.89
CCDC88B-208ENST00000492980 HMGCS1Q01581 520 aa20.63■□□□□ 0.89
CCDC88B-208ENST00000492980 ZNF648Q5T619 568 aaPredicted RBP20.63■□□□□ 0.89
CCDC88B-208ENST00000492980 OR52E8Q6IFG1 317 aa20.63■□□□□ 0.89
CCDC88B-208ENST00000492980 ADGRD2Q7Z7M1 963 aa20.63■□□□□ 0.89
CCDC88B-208ENST00000492980 AQP12AQ8IXF9 295 aa20.63■□□□□ 0.89
CCDC88B-208ENST00000492980 C12orf76Q8N812 135 aaPredicted RBP20.63■□□□□ 0.89
CCDC88B-208ENST00000492980 INTS7Q9NVH2 962 aaKnown RBP20.63■□□□□ 0.89
CCDC88B-208ENST00000492980 ACTR3BQ9P1U1 418 aa20.63■□□□□ 0.89
CCDC88B-208ENST00000492980 SLC27A6Q9Y2P4 619 aa20.63■□□□□ 0.89
CCDC88B-208ENST00000492980 TXNDC9O14530 226 aa20.63■□□□□ 0.89
CCDC88B-208ENST00000492980 TULP3O75386 442 aa20.63■□□□□ 0.89
CCDC88B-208ENST00000492980 CLDN9O95484 217 aa20.63■□□□□ 0.89
CCDC88B-208ENST00000492980 NPPAP01160 153 aa20.63■□□□□ 0.89
CCDC88B-208ENST00000492980 HIST1H2AGP0C0S8 130 aaPredicted RBP20.63■□□□□ 0.89
CCDC88B-208ENST00000492980 HIST1H2ADP20671 130 aa20.63■□□□□ 0.89
CCDC88B-208ENST00000492980 SLC6A12P48065 614 aa20.63■□□□□ 0.89
CCDC88B-208ENST00000492980 AAK1Q2M2I8 961 aa20.63■□□□□ 0.89
CCDC88B-208ENST00000492980 SGO1Q5FBB7 561 aa20.63■□□□□ 0.89
CCDC88B-208ENST00000492980 CAPRIN2Q6IMN6 1127 aaKnown RBP20.63■□□□□ 0.89
CCDC88B-208ENST00000492980 PARS2Q7L3T8 475 aaKnown RBP20.63■□□□□ 0.89
CCDC88B-208ENST00000492980 BEND7Q8N7W2 519 aaPredicted RBP20.63■□□□□ 0.89
CCDC88B-208ENST00000492980 ELMO1Q92556 727 aa20.63■□□□□ 0.89
CCDC88B-208ENST00000492980 TIFAQ96CG3 184 aa20.63■□□□□ 0.89
CCDC88B-208ENST00000492980 HIST1H2AHQ96KK5 128 aa20.63■□□□□ 0.89
CCDC88B-208ENST00000492980 HIST1H2AJQ99878 128 aa20.63■□□□□ 0.89
CCDC88B-208ENST00000492980 H2AFJQ9BTM1 129 aa20.63■□□□□ 0.89
CCDC88B-208ENST00000492980 HNMTP50135 292 aa20.62■□□□□ 0.89
CCDC88B-208ENST00000492980 LIPEQ05469 1076 aa20.62■□□□□ 0.89
CCDC88B-208ENST00000492980 MESP2Q0VG99 397 aa20.62■□□□□ 0.89
CCDC88B-208ENST00000492980 ZNF284Q2VY69 593 aa20.62■□□□□ 0.89
CCDC88B-208ENST00000492980 NEK10Q6ZWH5 1172 aa20.62■□□□□ 0.89
CCDC88B-208ENST00000492980 RGL4Q8IZJ4 473 aa20.62■□□□□ 0.89
CCDC88B-208ENST00000492980 NUDT8Q8WV74 236 aa20.62■□□□□ 0.89
CCDC88B-208ENST00000492980 CANT1Q8WVQ1 401 aa20.62■□□□□ 0.89
CCDC88B-208ENST00000492980 P2RY13Q9BPV8 354 aa20.62■□□□□ 0.89
CCDC88B-208ENST00000492980 SEMA6AQ9H2E6 1030 aa20.62■□□□□ 0.89
CCDC88B-208ENST00000492980 ALG2Q9H553 416 aa20.62■□□□□ 0.89
CCDC88B-208ENST00000492980 ACTR8Q9H981 624 aa20.62■□□□□ 0.89
CCDC88B-208ENST00000492980 ARMC1Q9NVT9 282 aa20.62■□□□□ 0.89
CCDC88B-208ENST00000492980 EIF3LQ9Y262 564 aaKnown RBP20.62■□□□□ 0.89
CCDC88B-208ENST00000492980 ARNTLO00327 626 aa20.62■□□□□ 0.89
CCDC88B-208ENST00000492980 IFRD1O00458 451 aaPredicted RBP20.62■□□□□ 0.89
CCDC88B-208ENST00000492980 ARPC2O15144 300 aa20.62■□□□□ 0.89
CCDC88B-208ENST00000492980 DENRO43583 198 aaKnown RBP20.62■□□□□ 0.89
CCDC88B-208ENST00000492980 FTH1P02794 183 aa20.62■□□□□ 0.89
CCDC88B-208ENST00000492980 LINGO3P0C6S8 592 aa20.62■□□□□ 0.89
CCDC88B-208ENST00000492980 ZCCHC18P0CG32 403 aa20.62■□□□□ 0.89
CCDC88B-208ENST00000492980 CYP2A7P20853 494 aa20.62■□□□□ 0.89
CCDC88B-208ENST00000492980 EEFSECP57772 596 aaKnown RBP20.62■□□□□ 0.89
CCDC88B-208ENST00000492980 ST8SIA6P61647 398 aa20.62■□□□□ 0.89
CCDC88B-208ENST00000492980 MAD2L1Q13257 205 aaPredicted RBP20.62■□□□□ 0.89
CCDC88B-208ENST00000492980 KIAA0040Q15053 153 aa20.62■□□□□ 0.89
CCDC88B-208ENST00000492980 NANOGP8Q6NSW7 305 aa20.62■□□□□ 0.89
CCDC88B-208ENST00000492980 HMBOX1Q6NT76 420 aa20.62■□□□□ 0.89
CCDC88B-208ENST00000492980 LIPIQ6XZB0 460 aa20.62■□□□□ 0.89
CCDC88B-208ENST00000492980 SPPL2CQ8IUH8 684 aa20.62■□□□□ 0.89
CCDC88B-208ENST00000492980 RASGRP3Q8IV61 690 aa20.62■□□□□ 0.89
CCDC88B-208ENST00000492980 ETFBKMTQ8IXQ9 262 aa20.62■□□□□ 0.89
CCDC88B-208ENST00000492980 KIAA1958Q8N8K9 716 aa20.62■□□□□ 0.89
CCDC88B-208ENST00000492980 BTN2A2Q8WVV5 523 aa20.62■□□□□ 0.89
CCDC88B-208ENST00000492980 NXPE3Q969Y0 559 aa20.62■□□□□ 0.89
CCDC88B-208ENST00000492980 TMEM74Q96NL1 305 aa20.62■□□□□ 0.89
CCDC88B-208ENST00000492980 EFHD1Q9BUP0 239 aa20.62■□□□□ 0.89
CCDC88B-208ENST00000492980 NANOGQ9H9S0 305 aa20.62■□□□□ 0.89
CCDC88B-208ENST00000492980 ZNHIT2Q9UHR6 403 aa20.62■□□□□ 0.89
CCDC88B-208ENST00000492980 CNOT11Q9UKZ1 510 aaKnown RBP20.62■□□□□ 0.89
CCDC88B-208ENST00000492980 RAB26Q9ULW5 256 aa20.62■□□□□ 0.89
CCDC88B-208ENST00000492980 ITM2BQ9Y287 266 aa20.62■□□□□ 0.89
CCDC88B-208ENST00000492980 OR2AG2A6NM03 316 aa20.61■□□□□ 0.89
CCDC88B-208ENST00000492980 PIM1P11309 404 aaPredicted RBP20.61■□□□□ 0.89
CCDC88B-208ENST00000492980 VARSP26640 1264 aaKnown RBP20.61■□□□□ 0.89
CCDC88B-208ENST00000492980 GNPDA1P46926 289 aa20.61■□□□□ 0.89
CCDC88B-208ENST00000492980 DGKQP52824 942 aa20.61■□□□□ 0.89
CCDC88B-208ENST00000492980 PTGR1Q14914 329 aa20.61■□□□□ 0.89
CCDC88B-208ENST00000492980 GRIN2CQ14957 1233 aa20.61■□□□□ 0.89
CCDC88B-208ENST00000492980 PDK3Q15120 406 aa20.61■□□□□ 0.89
CCDC88B-208ENST00000492980 IMPG1Q17R60 797 aa20.61■□□□□ 0.89
CCDC88B-208ENST00000492980 PDE12Q6L8Q7 609 aaKnown RBP20.61■□□□□ 0.89
CCDC88B-208ENST00000492980 DLEU7Q6UYE1 221 aa20.61■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms