RNA–Protein interactions for RNA: ENST00000492506.1

HDAC3-213, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 830 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-213ENST00000492506 ITGA9Q13797 1035 aa12.86□□□□□ -0.35
HDAC3-213ENST00000492506 DPYSL2Q16555 572 aa12.86□□□□□ -0.35
HDAC3-213ENST00000492506 KBTBD12Q3ZCT8 623 aa12.86□□□□□ -0.35
HDAC3-213ENST00000492506 ALG1LQ6GMV1 187 aa12.86□□□□□ -0.35
HDAC3-213ENST00000492506 PWWP2BQ6NUJ5 590 aa12.86□□□□□ -0.35
HDAC3-213ENST00000492506 KLC3Q6P597 504 aa12.86□□□□□ -0.35
HDAC3-213ENST00000492506 PPP1R3BQ86XI6 285 aa12.86□□□□□ -0.35
HDAC3-213ENST00000492506 NDUFAF2Q8N183 169 aa12.86□□□□□ -0.35
HDAC3-213ENST00000492506 ATPAF2Q8N5M1 289 aa12.86□□□□□ -0.35
HDAC3-213ENST00000492506 SMYD1Q8NB12 490 aa12.86□□□□□ -0.35
HDAC3-213ENST00000492506 THAP4Q8WY91 577 aa12.86□□□□□ -0.35
HDAC3-213ENST00000492506 RSC1A1Q92681 617 aa12.86□□□□□ -0.35
HDAC3-213ENST00000492506 FAM136AQ96C01 138 aa12.86□□□□□ -0.35
HDAC3-213ENST00000492506 PCMTD1Q96MG8 357 aaPredicted RBP12.86□□□□□ -0.35
HDAC3-213ENST00000492506 RUNDC3BQ96NL0 473 aa12.86□□□□□ -0.35
HDAC3-213ENST00000492506 CSPG4P5Q96PW8 444 aa12.86□□□□□ -0.35
HDAC3-213ENST00000492506 GPR87Q9BY21 358 aa12.86□□□□□ -0.35
HDAC3-213ENST00000492506 PCMTD2Q9NV79 361 aa12.86□□□□□ -0.35
HDAC3-213ENST00000492506 TBCCD1Q9NVR7 557 aa12.86□□□□□ -0.35
HDAC3-213ENST00000492506 SEMA5BQ9P283 1151 aa12.86□□□□□ -0.35
HDAC3-213ENST00000492506 SLC23A2Q9UGH3 650 aa12.86□□□□□ -0.35
HDAC3-213ENST00000492506 ERRFI1Q9UJM3 462 aaPredicted RBP12.86□□□□□ -0.35
HDAC3-213ENST00000492506 CHKBQ9Y259 395 aa12.86□□□□□ -0.35
HDAC3-213ENST00000492506 H3BRJ5 948 aa12.85□□□□□ -0.35
HDAC3-213ENST00000492506 CEACAM4O75871 244 aa12.85□□□□□ -0.35
HDAC3-213ENST00000492506 LDLRP01130 860 aa12.85□□□□□ -0.35
HDAC3-213ENST00000492506 BRAFP15056 766 aa12.85□□□□□ -0.35
HDAC3-213ENST00000492506 AMD1P17707 334 aa12.85□□□□□ -0.35
HDAC3-213ENST00000492506 NELFEP18615 380 aaKnown RBP12.85□□□□□ -0.35
HDAC3-213ENST00000492506 PTPN4P29074 926 aa12.85□□□□□ -0.35
HDAC3-213ENST00000492506 ECHS1P30084 290 aa12.85□□□□□ -0.35
HDAC3-213ENST00000492506 CAPZBP47756 277 aa12.85□□□□□ -0.35
HDAC3-213ENST00000492506 DRG2P55039 364 aaKnown RBP12.85□□□□□ -0.35
HDAC3-213ENST00000492506 LSAMPQ13449 338 aa12.85□□□□□ -0.35
HDAC3-213ENST00000492506 RPS6KA1Q15418 735 aa12.85□□□□□ -0.35
HDAC3-213ENST00000492506 ADRM1Q16186 407 aa12.85□□□□□ -0.35
HDAC3-213ENST00000492506 ZNF648Q5T619 568 aaPredicted RBP12.85□□□□□ -0.35
HDAC3-213ENST00000492506 CACHD1Q5VU97 1274 aa12.85□□□□□ -0.35
HDAC3-213ENST00000492506 JMJD6Q6NYC1 403 aaPredicted RBP12.85□□□□□ -0.35
HDAC3-213ENST00000492506 FAM199XQ6PEV8 388 aaPredicted RBP12.85□□□□□ -0.35
HDAC3-213ENST00000492506 IRF2BP2Q7Z5L9 587 aa12.85□□□□□ -0.35
HDAC3-213ENST00000492506 PHYKPLQ8IUZ5 450 aa12.85□□□□□ -0.35
HDAC3-213ENST00000492506 SLX1AQ9BQ83 275 aa12.85□□□□□ -0.35
HDAC3-213ENST00000492506 SELENOSQ9BQE4 189 aa12.85□□□□□ -0.35
HDAC3-213ENST00000492506 TDRD1Q9BXT4 1180 aaKnown RBP12.85□□□□□ -0.35
HDAC3-213ENST00000492506 ING2Q9H160 280 aa12.85□□□□□ -0.35
HDAC3-213ENST00000492506 FAM83DQ9H4H8 585 aa12.85□□□□□ -0.35
HDAC3-213ENST00000492506 ABCF3Q9NUQ8 709 aa12.85□□□□□ -0.35
HDAC3-213ENST00000492506 GALNT8Q9NY28 637 aa12.85□□□□□ -0.35
HDAC3-213ENST00000492506 TUBA8Q9NY65 449 aaPredicted RBP12.85□□□□□ -0.35
HDAC3-213ENST00000492506 DTLQ9NZJ0 730 aa12.85□□□□□ -0.35
HDAC3-213ENST00000492506 EPHA6Q9UF33 1036 aa12.85□□□□□ -0.35
HDAC3-213ENST00000492506 SEC16AO15027 2179 aa12.85□□□□□ -0.35
HDAC3-213ENST00000492506 PIKFYVEQ9Y2I7 2098 aa12.85□□□□□ -0.35
HDAC3-213ENST00000492506 CCDC88CQ9P219 2028 aa12.84□□□□□ -0.35
HDAC3-213ENST00000492506 MDC1Q14676 2089 aaKnown RBP12.84□□□□□ -0.35
HDAC3-213ENST00000492506 PDZD2O15018 2839 aa12.84□□□□□ -0.35
HDAC3-213ENST00000492506 SMIM31A0A1B0GVY4 71 aa12.84□□□□□ -0.35
HDAC3-213ENST00000492506 ARGFXA6NJG6 315 aa12.84□□□□□ -0.35
HDAC3-213ENST00000492506 PEX11AO75192 247 aa12.84□□□□□ -0.35
HDAC3-213ENST00000492506 DCTN3O75935 186 aa12.84□□□□□ -0.35
HDAC3-213ENST00000492506 VIPP01282 170 aa12.84□□□□□ -0.35
HDAC3-213ENST00000492506 FOLR1P15328 257 aa12.84□□□□□ -0.35
HDAC3-213ENST00000492506 GSTT1P30711 240 aa12.84□□□□□ -0.35
HDAC3-213ENST00000492506 CCL11P51671 97 aa12.84□□□□□ -0.35
HDAC3-213ENST00000492506 EPHB1P54762 984 aa12.84□□□□□ -0.35
HDAC3-213ENST00000492506 PPP1CAP62136 330 aa12.84□□□□□ -0.35
HDAC3-213ENST00000492506 DSC2Q02487 901 aa12.84□□□□□ -0.35
HDAC3-213ENST00000492506 SMTNL2Q2TAL5 461 aa12.84□□□□□ -0.35
HDAC3-213ENST00000492506 TXNRD3NBQ6F5E7 133 aa12.84□□□□□ -0.35
HDAC3-213ENST00000492506 ABRAXAS1Q6UWZ7 409 aa12.84□□□□□ -0.35
HDAC3-213ENST00000492506 ZNF517Q6ZMY9 492 aaPredicted RBP12.84□□□□□ -0.35
HDAC3-213ENST00000492506 FAM92BQ6ZTR7 304 aa12.84□□□□□ -0.35
HDAC3-213ENST00000492506 SYVN1Q86TM6 617 aa12.84□□□□□ -0.35
HDAC3-213ENST00000492506 SYCE1Q8N0S2 351 aa12.84□□□□□ -0.35
HDAC3-213ENST00000492506 PRR7Q8TB68 274 aa12.84□□□□□ -0.35
HDAC3-213ENST00000492506 ARRDC2Q8TBH0 407 aa12.84□□□□□ -0.35
HDAC3-213ENST00000492506 ADAMTS17Q8TE56 1095 aa12.84□□□□□ -0.35
HDAC3-213ENST00000492506 EID2BQ96D98 161 aa12.84□□□□□ -0.35
HDAC3-213ENST00000492506 SLC41A2Q96JW4 573 aa12.84□□□□□ -0.35
HDAC3-213ENST00000492506 AGAP3Q96P47 875 aa12.84□□□□□ -0.35
HDAC3-213ENST00000492506 FCRL4Q96PJ5 515 aa12.84□□□□□ -0.35
HDAC3-213ENST00000492506 FMO2Q99518 471 aa12.84□□□□□ -0.35
HDAC3-213ENST00000492506 TXLNGYQ9BZA5 131 aa12.84□□□□□ -0.35
HDAC3-213ENST00000492506 POLR1EQ9GZS1 481 aaKnown RBP12.84□□□□□ -0.35
HDAC3-213ENST00000492506 RAB33BQ9H082 229 aa12.84□□□□□ -0.35
HDAC3-213ENST00000492506 OR2AG1Q9H205 316 aa12.84□□□□□ -0.35
HDAC3-213ENST00000492506 LUZP4Q9P127 313 aa12.84□□□□□ -0.35
HDAC3-213ENST00000492506 DNPEPQ9ULA0 475 aa12.84□□□□□ -0.35
HDAC3-213ENST00000492506 TTC7AQ9ULT0 858 aaPredicted RBP12.84□□□□□ -0.35
HDAC3-213ENST00000492506 POLEQ07864 2286 aa12.84□□□□□ -0.35
HDAC3-213ENST00000492506 POLQO75417 2590 aa12.84□□□□□ -0.35
HDAC3-213ENST00000492506 CSMD2Q7Z408 3487 aa12.84□□□□□ -0.35
HDAC3-213ENST00000492506 DIDO1Q9BTC0 2240 aaKnown RBP12.84□□□□□ -0.35
HDAC3-213ENST00000492506 CROCCQ5TZA2 2017 aa12.83□□□□□ -0.36
HDAC3-213ENST00000492506 IGHV5-51A0A0C4DH38 117 aa12.83□□□□□ -0.36
HDAC3-213ENST00000492506 C1orf232A0A0U1RR37 186 aa12.83□□□□□ -0.36
HDAC3-213ENST00000492506 RGSL1A5PLK6 1076 aa12.83□□□□□ -0.36
HDAC3-213ENST00000492506 ATP6V1G1O75348 118 aa12.83□□□□□ -0.36
HDAC3-213ENST00000492506 SERPING1P05155 500 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms