RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 TPRG1LQ5T0D9 272 aa21.14■□□□□ 0.97
SMC4-221ENST00000489573 METRNLQ641Q3 311 aa21.14■□□□□ 0.97
SMC4-221ENST00000489573 METTL2BQ6P1Q9 378 aaKnown RBP21.14■□□□□ 0.97
SMC4-221ENST00000489573 FOXR1Q6PIV2 292 aa21.14■□□□□ 0.97
SMC4-221ENST00000489573 ZNF771Q7L3S4 317 aaPredicted RBP21.14■□□□□ 0.97
SMC4-221ENST00000489573 PDZD3Q86UT5 571 aa21.14■□□□□ 0.97
SMC4-221ENST00000489573 TRPC4APQ8TEL6 797 aa21.14■□□□□ 0.97
SMC4-221ENST00000489573 OR1E3Q8WZA6 343 aa21.14■□□□□ 0.97
SMC4-221ENST00000489573 EDAQ92838 391 aa21.14■□□□□ 0.97
SMC4-221ENST00000489573 OR2M4Q96R27 311 aa21.14■□□□□ 0.97
SMC4-221ENST00000489573 UHRF1Q96T88 793 aaPredicted RBP21.14■□□□□ 0.97
SMC4-221ENST00000489573 CARS2Q9HA77 564 aaKnown RBP21.14■□□□□ 0.97
SMC4-221ENST00000489573 KLC4Q9NSK0 619 aa21.14■□□□□ 0.97
SMC4-221ENST00000489573 GPSM3Q9Y4H4 160 aa21.14■□□□□ 0.97
SMC4-221ENST00000489573 SLCO1B7G3V0H7 640 aa21.13■□□□□ 0.97
SMC4-221ENST00000489573 EBAG9O00559 213 aa21.13■□□□□ 0.97
SMC4-221ENST00000489573 UBFD1O14562 309 aaKnown RBP21.13■□□□□ 0.97
SMC4-221ENST00000489573 TNFRSF10CO14798 259 aa21.13■□□□□ 0.97
SMC4-221ENST00000489573 ACADLP28330 430 aa21.13■□□□□ 0.97
SMC4-221ENST00000489573 HNMTP50135 292 aa21.13■□□□□ 0.97
SMC4-221ENST00000489573 UNC5DQ6UXZ4 953 aa21.13■□□□□ 0.97
SMC4-221ENST00000489573 Q6ZSR6 202 aa21.13■□□□□ 0.97
SMC4-221ENST00000489573 AFAP1L2Q8N4X5 818 aa21.13■□□□□ 0.97
SMC4-221ENST00000489573 FBXO15Q8NCQ5 510 aaPredicted RBP21.13■□□□□ 0.97
SMC4-221ENST00000489573 CADM4Q8NFZ8 388 aa21.13■□□□□ 0.97
SMC4-221ENST00000489573 PDXPQ96GD0 296 aa21.13■□□□□ 0.97
SMC4-221ENST00000489573 CD244Q9BZW8 370 aa21.13■□□□□ 0.97
SMC4-221ENST00000489573 SEMA4BQ9NPR2 832 aaPredicted RBP21.13■□□□□ 0.97
SMC4-221ENST00000489573 KLQ9UEF7 1012 aa21.13■□□□□ 0.97
SMC4-221ENST00000489573 ACSL5Q9ULC5 683 aa21.13■□□□□ 0.97
SMC4-221ENST00000489573 INVSQ9Y283 1065 aa21.13■□□□□ 0.97
SMC4-221ENST00000489573 TTC28Q96AY4 2481 aa21.12■□□□□ 0.97
SMC4-221ENST00000489573 ERICH4A6NGS2 130 aa21.12■□□□□ 0.97
SMC4-221ENST00000489573 METTL12A8MUP2 240 aa21.12■□□□□ 0.97
SMC4-221ENST00000489573 C1orf105O95561 183 aa21.12■□□□□ 0.97
SMC4-221ENST00000489573 MLYCDO95822 493 aa21.12■□□□□ 0.97
SMC4-221ENST00000489573 USP39Q53GS9 565 aaKnown RBP21.12■□□□□ 0.97
SMC4-221ENST00000489573 OR13H1Q8NG92 308 aa21.12■□□□□ 0.97
SMC4-221ENST00000489573 FBXL8Q96CD0 374 aa21.12■□□□□ 0.97
SMC4-221ENST00000489573 RMDN2Q96LZ7 410 aa21.12■□□□□ 0.97
SMC4-221ENST00000489573 ORAI3Q9BRQ5 295 aa21.12■□□□□ 0.97
SMC4-221ENST00000489573 HGH1Q9BTY7 390 aa21.12■□□□□ 0.97
SMC4-221ENST00000489573 ZDHHC5Q9C0B5 715 aa21.12■□□□□ 0.97
SMC4-221ENST00000489573 WWP1Q9H0M0 922 aa21.12■□□□□ 0.97
SMC4-221ENST00000489573 STN1Q9H668 368 aaKnown RBP21.12■□□□□ 0.97
SMC4-221ENST00000489573 ZBTB26Q9HCK0 441 aa21.12■□□□□ 0.97
SMC4-221ENST00000489573 MID1IP1Q9NPA3 183 aa21.12■□□□□ 0.97
SMC4-221ENST00000489573 DNAJC28Q9NX36 388 aa21.12■□□□□ 0.97
SMC4-221ENST00000489573 VTI1BQ9UEU0 232 aa21.12■□□□□ 0.97
SMC4-221ENST00000489573 MATN2O00339 956 aa21.11■□□□□ 0.97
SMC4-221ENST00000489573 ZNF195O14628 629 aa21.11■□□□□ 0.97
SMC4-221ENST00000489573 PI15O43692 258 aa21.11■□□□□ 0.97
SMC4-221ENST00000489573 CCNT2O60583 730 aaKnown RBP21.11■□□□□ 0.97
SMC4-221ENST00000489573 GGT5P36269 586 aa21.11■□□□□ 0.97
SMC4-221ENST00000489573 RBBP7Q16576 425 aa21.11■□□□□ 0.97
SMC4-221ENST00000489573 TTC23LQ6PF05 361 aa21.11■□□□□ 0.97
SMC4-221ENST00000489573 SLC36A4Q6YBV0 504 aa21.11■□□□□ 0.97
SMC4-221ENST00000489573 MAVSQ7Z434 540 aa21.11■□□□□ 0.97
SMC4-221ENST00000489573 GOLGA7Q7Z5G4 137 aa21.11■□□□□ 0.97
SMC4-221ENST00000489573 FAM174AQ8TBP5 190 aa21.11■□□□□ 0.97
SMC4-221ENST00000489573 AGAP11Q8TF27 550 aa21.11■□□□□ 0.97
SMC4-221ENST00000489573 FAR2Q96K12 515 aa21.11■□□□□ 0.97
SMC4-221ENST00000489573 CCDC138Q96M89 665 aa21.11■□□□□ 0.97
SMC4-221ENST00000489573 OSGEPL1Q9H4B0 414 aa21.11■□□□□ 0.97
SMC4-221ENST00000489573 TNFRSF12AQ9NP84 129 aa21.11■□□□□ 0.97
SMC4-221ENST00000489573 SPATA6Q9NWH7 488 aaPredicted RBP21.11■□□□□ 0.97
SMC4-221ENST00000489573 OPTCQ9UBM4 332 aa21.11■□□□□ 0.97
SMC4-221ENST00000489573 KCNK6Q9Y257 313 aa21.11■□□□□ 0.97
SMC4-221ENST00000489573 PRR19A6NJB7 356 aa21.1■□□□□ 0.97
SMC4-221ENST00000489573 TMEM233B4DJY2 109 aa21.1■□□□□ 0.97
SMC4-221ENST00000489573 IFRD1O00458 451 aaPredicted RBP21.1■□□□□ 0.97
SMC4-221ENST00000489573 PPP6CO00743 305 aa21.1■□□□□ 0.97
SMC4-221ENST00000489573 HDAC3O15379 428 aa21.1■□□□□ 0.97
SMC4-221ENST00000489573 STK16O75716 305 aa21.1■□□□□ 0.97
SMC4-221ENST00000489573 SLC35G4P0C7Q5 338 aa21.1■□□□□ 0.97
SMC4-221ENST00000489573 AOC1P19801 751 aa21.1■□□□□ 0.97
SMC4-221ENST00000489573 CD27P26842 260 aa21.1■□□□□ 0.97
SMC4-221ENST00000489573 SH3BP2P78314 561 aa21.1■□□□□ 0.97
SMC4-221ENST00000489573 RPL6Q02878 288 aaKnown RBP21.1■□□□□ 0.97
SMC4-221ENST00000489573 GTF2H2Q13888 395 aa21.1■□□□□ 0.97
SMC4-221ENST00000489573 PTK2BQ14289 1009 aa21.1■□□□□ 0.97
SMC4-221ENST00000489573 GTF2H2CQ6P1K8 395 aa21.1■□□□□ 0.97
SMC4-221ENST00000489573 SPATS2Q86XZ4 545 aaKnown RBP21.1■□□□□ 0.97
SMC4-221ENST00000489573 SPDYE1Q8NFV5 336 aaPredicted RBP21.1■□□□□ 0.97
SMC4-221ENST00000489573 ATL1Q8WXF7 558 aa21.1■□□□□ 0.97
SMC4-221ENST00000489573 PSMD13Q9UNM6 376 aa21.1■□□□□ 0.97
SMC4-221ENST00000489573 STK38LQ9Y2H1 464 aa21.1■□□□□ 0.97
SMC4-221ENST00000489573 PLEKHM1Q9Y4G2 1056 aa21.1■□□□□ 0.97
SMC4-221ENST00000489573 ANGPTL3Q9Y5C1 460 aa21.1■□□□□ 0.97
SMC4-221ENST00000489573 KRT87PA6NCN2 255 aa21.1■□□□□ 0.97
SMC4-221ENST00000489573 K7EPI3 171 aa21.1■□□□□ 0.97
SMC4-221ENST00000489573 CLCNKAP51800 687 aa21.1■□□□□ 0.97
SMC4-221ENST00000489573 SRP54P61011 504 aaKnown RBP21.1■□□□□ 0.97
SMC4-221ENST00000489573 CCSMST1Q4G0I0 132 aa21.1■□□□□ 0.97
SMC4-221ENST00000489573 LRRC70Q7Z2Q7 622 aa21.1■□□□□ 0.97
SMC4-221ENST00000489573 SLC22A18ASQ8N1D0 253 aa21.1■□□□□ 0.97
SMC4-221ENST00000489573 DEFB119Q8N690 84 aa21.1■□□□□ 0.97
SMC4-221ENST00000489573 TEX9Q8N6V9 391 aa21.1■□□□□ 0.97
SMC4-221ENST00000489573 MAGEC3Q8TD91 643 aa21.1■□□□□ 0.97
SMC4-221ENST00000489573 SLC6A18Q96N87 628 aa21.1■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms