RNA–Protein interactions for RNA: ENST00000489540.1

MDC1-206, Transcript of mediator of DNA damage checkpoint 1, humanhuman

TSL 2

Gene MDC1, Length 1,402 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MDC1-206ENST00000489540 ELK3P41970 407 aa16.87■□□□□ 0.29
MDC1-206ENST00000489540 CBLBQ13191 982 aa16.87■□□□□ 0.29
MDC1-206ENST00000489540 WHAMMP3Q1A5X7 153 aa16.87■□□□□ 0.29
MDC1-206ENST00000489540 DNTTIP2Q5QJE6 756 aaKnown RBP16.87■□□□□ 0.29
MDC1-206ENST00000489540 DCAF12Q5T6F0 453 aa16.87■□□□□ 0.29
MDC1-206ENST00000489540 DUPD1Q68J44 220 aa16.87■□□□□ 0.29
MDC1-206ENST00000489540 FAM92BQ6ZTR7 304 aa16.87■□□□□ 0.29
MDC1-206ENST00000489540 AMIGO1Q86WK6 493 aa16.87■□□□□ 0.29
MDC1-206ENST00000489540 IGDCC3Q8IVU1 814 aa16.87■□□□□ 0.29
MDC1-206ENST00000489540 CARFQ8N187 725 aa16.87■□□□□ 0.29
MDC1-206ENST00000489540 BMPERQ8N8U9 685 aa16.87■□□□□ 0.29
MDC1-206ENST00000489540 OR5AR1Q8NGP9 310 aa16.87■□□□□ 0.29
MDC1-206ENST00000489540 KCNE4Q8WWG9 221 aa16.87■□□□□ 0.29
MDC1-206ENST00000489540 KLHL6Q8WZ60 621 aa16.87■□□□□ 0.29
MDC1-206ENST00000489540 ART4Q93070 314 aa16.87■□□□□ 0.29
MDC1-206ENST00000489540 TEFMQ96QE5 360 aaKnown RBP16.87■□□□□ 0.29
MDC1-206ENST00000489540 RAB17Q9H0T7 212 aa16.87■□□□□ 0.29
MDC1-206ENST00000489540 CCDC68Q9H2F9 335 aa16.87■□□□□ 0.29
MDC1-206ENST00000489540 IARS2Q9NSE4 1012 aaKnown RBP16.87■□□□□ 0.29
MDC1-206ENST00000489540 COMMD10Q9Y6G5 202 aa16.87■□□□□ 0.29
MDC1-206ENST00000489540 TEX264Q9Y6I9 313 aa16.87■□□□□ 0.29
MDC1-206ENST00000489540 C9orf172C9J069 976 aa16.86■□□□□ 0.29
MDC1-206ENST00000489540 E5RI56 91 aa16.86■□□□□ 0.29
MDC1-206ENST00000489540 KIF1CO43896 1103 aaKnown RBP16.86■□□□□ 0.29
MDC1-206ENST00000489540 ERVK-10P10266 1014 aa16.86■□□□□ 0.29
MDC1-206ENST00000489540 SLC1A2P43004 574 aa16.86■□□□□ 0.29
MDC1-206ENST00000489540 ABRQ12979 859 aa16.86■□□□□ 0.29
MDC1-206ENST00000489540 ZNF789Q5FWF6 425 aa16.86■□□□□ 0.29
MDC1-206ENST00000489540 UNC5DQ6UXZ4 953 aa16.86■□□□□ 0.29
MDC1-206ENST00000489540 KMT5CQ86Y97 462 aa16.86■□□□□ 0.29
MDC1-206ENST00000489540 VRK3Q8IV63 474 aa16.86■□□□□ 0.29
MDC1-206ENST00000489540 PWWP2AQ96N64 755 aa16.86■□□□□ 0.29
MDC1-206ENST00000489540 ZPBPQ9BS86 351 aa16.86■□□□□ 0.29
MDC1-206ENST00000489540 HGH1Q9BTY7 390 aa16.86■□□□□ 0.29
MDC1-206ENST00000489540 FBXO6Q9NRD1 293 aaPredicted RBP16.86■□□□□ 0.29
MDC1-206ENST00000489540 KLHL42Q9P2K6 505 aa16.86■□□□□ 0.29
MDC1-206ENST00000489540 MRFAP1Q9Y605 127 aa16.86■□□□□ 0.29
MDC1-206ENST00000489540 TLCD2A6NGC4 264 aa16.85■□□□□ 0.29
MDC1-206ENST00000489540 E7ESA3 106 aa16.85■□□□□ 0.29
MDC1-206ENST00000489540 NIPSNAP2O75323 286 aa16.85■□□□□ 0.29
MDC1-206ENST00000489540 POLR2CP19387 275 aaPredicted RBP16.85■□□□□ 0.29
MDC1-206ENST00000489540 SHMT2P34897 504 aa16.85■□□□□ 0.29
MDC1-206ENST00000489540 SEPHS1P49903 392 aa16.85■□□□□ 0.29
MDC1-206ENST00000489540 PDIA2Q13087 525 aaKnown RBP16.85■□□□□ 0.29
MDC1-206ENST00000489540 FRG1Q14331 258 aaKnown RBP16.85■□□□□ 0.29
MDC1-206ENST00000489540 HP1BP3Q5SSJ5 553 aaPredicted RBP16.85■□□□□ 0.29
MDC1-206ENST00000489540 TTC23LQ6PF05 361 aa16.85■□□□□ 0.29
MDC1-206ENST00000489540 UNC5AQ6ZN44 842 aa16.85■□□□□ 0.29
MDC1-206ENST00000489540 KIAA0408Q6ZU52 694 aa16.85■□□□□ 0.29
MDC1-206ENST00000489540 UNC5BQ8IZJ1 945 aa16.85■□□□□ 0.29
MDC1-206ENST00000489540 C2CD4AQ8NCU7 369 aaPredicted RBP16.85■□□□□ 0.29
MDC1-206ENST00000489540 HNRNPLLQ8WVV9 542 aaKnown RBP16.85■□□□□ 0.29
MDC1-206ENST00000489540 CERS2Q96G23 380 aa16.85■□□□□ 0.29
MDC1-206ENST00000489540 NAF1Q96HR8 494 aaKnown RBP16.85■□□□□ 0.29
MDC1-206ENST00000489540 SLC41A2Q96JW4 573 aa16.85■□□□□ 0.29
MDC1-206ENST00000489540 FOPNLQ96NB1 174 aa16.85■□□□□ 0.29
MDC1-206ENST00000489540 MAP3K3Q99759 626 aa16.85■□□□□ 0.29
MDC1-206ENST00000489540 DPH5Q9H2P9 285 aa16.85■□□□□ 0.29
MDC1-206ENST00000489540 OR6C2Q9NZP2 312 aa16.85■□□□□ 0.29
MDC1-206ENST00000489540 FOXJ2Q9P0K8 574 aa16.85■□□□□ 0.29
MDC1-206ENST00000489540 CHMP2BQ9UQN3 213 aa16.85■□□□□ 0.29
MDC1-206ENST00000489540 TDRKHQ9Y2W6 561 aaKnown RBP16.85■□□□□ 0.29
MDC1-206ENST00000489540 PCDHB11Q9Y5F2 797 aa16.85■□□□□ 0.29
MDC1-206ENST00000489540 POLR1CO15160 346 aaPredicted RBP16.84■□□□□ 0.29
MDC1-206ENST00000489540 HAUS5O94927 633 aa16.84■□□□□ 0.29
MDC1-206ENST00000489540 NELFEP18615 380 aaKnown RBP16.84■□□□□ 0.29
MDC1-206ENST00000489540 ATP5DP30049 168 aa16.84■□□□□ 0.29
MDC1-206ENST00000489540 ABCG1P45844 678 aa16.84■□□□□ 0.29
MDC1-206ENST00000489540 ARL4DP49703 201 aa16.84■□□□□ 0.29
MDC1-206ENST00000489540 PPP1CAP62136 330 aa16.84■□□□□ 0.29
MDC1-206ENST00000489540 CAV1Q03135 178 aa16.84■□□□□ 0.29
MDC1-206ENST00000489540 IL11RAQ14626 422 aa16.84■□□□□ 0.29
MDC1-206ENST00000489540 STEAP4Q687X5 459 aa16.84■□□□□ 0.29
MDC1-206ENST00000489540 CYB5D1Q6P9G0 228 aa16.84■□□□□ 0.29
MDC1-206ENST00000489540 CEACAM20Q6UY09 585 aa16.84■□□□□ 0.29
MDC1-206ENST00000489540 CNTN4Q8IWV2 1026 aa16.84■□□□□ 0.29
MDC1-206ENST00000489540 SPACA3Q8IXA5 215 aa16.84■□□□□ 0.29
MDC1-206ENST00000489540 CFAP61Q8NHU2 1237 aa16.84■□□□□ 0.29
MDC1-206ENST00000489540 SKA2Q8WVK7 121 aaPredicted RBP16.84■□□□□ 0.29
MDC1-206ENST00000489540 KCNJ9Q92806 393 aa16.84■□□□□ 0.29
MDC1-206ENST00000489540 CFAP36Q96G28 342 aa16.84■□□□□ 0.29
MDC1-206ENST00000489540 XKR8Q9H6D3 395 aa16.84■□□□□ 0.29
MDC1-206ENST00000489540 PPANQ9NQ55 473 aaKnown RBP16.84■□□□□ 0.29
MDC1-206ENST00000489540 B3GALT1Q9Y5Z6 326 aa16.84■□□□□ 0.29
MDC1-206ENST00000489540 BPTFQ12830 3046 aa16.84■□□□□ 0.29
MDC1-206ENST00000489540 IGHV5-51A0A0C4DH38 117 aa16.83■□□□□ 0.28
MDC1-206ENST00000489540 GSAPA4D1B5 854 aa16.83■□□□□ 0.28
MDC1-206ENST00000489540 C2orf74A8MZ97 194 aa16.83■□□□□ 0.28
MDC1-206ENST00000489540 IQCJ-SCHIP1C9J366 451 aaPredicted RBP16.83■□□□□ 0.28
MDC1-206ENST00000489540 BTN3A3O00478 584 aa16.83■□□□□ 0.28
MDC1-206ENST00000489540 BTN3A1O00481 513 aa16.83■□□□□ 0.28
MDC1-206ENST00000489540 EIF3HO15372 352 aaKnown RBP eCLIP16.83■□□□□ 0.282e-6■□□□□ 9.4
MDC1-206ENST00000489540 KLK10O43240 276 aa16.83■□□□□ 0.28
MDC1-206ENST00000489540 PRDX3P30048 256 aaKnown RBP16.83■□□□□ 0.28
MDC1-206ENST00000489540 CARSP49589 748 aaKnown RBP16.83■□□□□ 0.28
MDC1-206ENST00000489540 KPNA2P52292 529 aaKnown RBP16.83■□□□□ 0.28
MDC1-206ENST00000489540 HSD11B2P80365 405 aa16.83■□□□□ 0.28
MDC1-206ENST00000489540 MPP1Q00013 466 aa16.83■□□□□ 0.28
MDC1-206ENST00000489540 GBX1Q14549 363 aa16.83■□□□□ 0.28
MDC1-206ENST00000489540 TTLL9Q3SXZ7 439 aa16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms