RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 SYVN1Q86TM6 617 aa20.9■□□□□ 0.94
USP40-215ENST00000484528 TRIM73Q86UV7 250 aa20.9■□□□□ 0.94
USP40-215ENST00000484528 AMIGO1Q86WK6 493 aa20.9■□□□□ 0.94
USP40-215ENST00000484528 ADGRF3Q8IZF5 1079 aa20.9■□□□□ 0.94
USP40-215ENST00000484528 ENDOVQ8N8Q3 282 aaKnown RBP20.9■□□□□ 0.94
USP40-215ENST00000484528 DNAAF3Q8N9W5 541 aa20.9■□□□□ 0.94
USP40-215ENST00000484528 OR5AR1Q8NGP9 310 aa20.9■□□□□ 0.94
USP40-215ENST00000484528 CPT1BQ92523 772 aa20.9■□□□□ 0.94
USP40-215ENST00000484528 ELMO1Q92556 727 aa20.9■□□□□ 0.94
USP40-215ENST00000484528 TRAPPC9Q96Q05 1148 aa20.9■□□□□ 0.94
USP40-215ENST00000484528 PITPNM3Q9BZ71 974 aa20.9■□□□□ 0.94
USP40-215ENST00000484528 ACTR10Q9NZ32 417 aa20.9■□□□□ 0.94
USP40-215ENST00000484528 ICKQ9UPZ9 632 aa20.9■□□□□ 0.94
USP40-215ENST00000484528 PLAAQ9Y263 795 aa20.9■□□□□ 0.94
USP40-215ENST00000484528 MROH6A6NGR9 719 aa20.89■□□□□ 0.93
USP40-215ENST00000484528 ARGFXA6NJG6 315 aa20.89■□□□□ 0.93
USP40-215ENST00000484528 MEN1O00255 615 aa20.89■□□□□ 0.93
USP40-215ENST00000484528 AP2A2O94973 939 aa20.89■□□□□ 0.93
USP40-215ENST00000484528 RECKO95980 971 aa20.89■□□□□ 0.93
USP40-215ENST00000484528 IFNB1P01574 187 aa20.89■□□□□ 0.93
USP40-215ENST00000484528 KLK3P07288 261 aaPredicted RBP20.89■□□□□ 0.93
USP40-215ENST00000484528 CYP2A7P20853 494 aa20.89■□□□□ 0.93
USP40-215ENST00000484528 NSG1P42857 185 aa20.89■□□□□ 0.93
USP40-215ENST00000484528 PTCHD3Q3KNS1 767 aa20.89■□□□□ 0.93
USP40-215ENST00000484528 ZNF789Q5FWF6 425 aa20.89■□□□□ 0.93
USP40-215ENST00000484528 ZNF517Q6ZMY9 492 aaPredicted RBP20.89■□□□□ 0.93
USP40-215ENST00000484528 PRUNE1Q86TP1 453 aa20.89■□□□□ 0.93
USP40-215ENST00000484528 LINC00523Q86TU6 105 aa20.89■□□□□ 0.93
USP40-215ENST00000484528 APLFQ8IW19 511 aaPredicted RBP20.89■□□□□ 0.93
USP40-215ENST00000484528 DSELQ8IZU8 1212 aa20.89■□□□□ 0.93
USP40-215ENST00000484528 TXLNBQ8N3L3 684 aa20.89■□□□□ 0.93
USP40-215ENST00000484528 TEX19Q8NA77 164 aa20.89■□□□□ 0.93
USP40-215ENST00000484528 ACTR5Q9H9F9 607 aaPredicted RBP20.89■□□□□ 0.93
USP40-215ENST00000484528 SLC2A6Q9UGQ3 507 aa20.89■□□□□ 0.93
USP40-215ENST00000484528 ASF1AQ9Y294 204 aa20.89■□□□□ 0.93
USP40-215ENST00000484528 RELNP78509 3460 aa20.88■□□□□ 0.93
USP40-215ENST00000484528 C2orf74A8MZ97 194 aa20.88■□□□□ 0.93
USP40-215ENST00000484528 LIN7AO14910 233 aaPredicted RBP20.88■□□□□ 0.93
USP40-215ENST00000484528 ATXN8OSP0DMR3 200 aa20.88■□□□□ 0.93
USP40-215ENST00000484528 GRIA1P42261 906 aa20.88■□□□□ 0.93
USP40-215ENST00000484528 PTGIRP43119 386 aa20.88■□□□□ 0.93
USP40-215ENST00000484528 CSE1LP55060 971 aaKnown RBP20.88■□□□□ 0.93
USP40-215ENST00000484528 GSDMDP57764 484 aa20.88■□□□□ 0.93
USP40-215ENST00000484528 CDH17Q12864 832 aa20.88■□□□□ 0.93
USP40-215ENST00000484528 ITIH4Q14624 930 aa20.88■□□□□ 0.93
USP40-215ENST00000484528 SYTL3Q4VX76 610 aa20.88■□□□□ 0.93
USP40-215ENST00000484528 SEL1L2Q5TEA6 688 aa20.88■□□□□ 0.93
USP40-215ENST00000484528 PPP1R21Q6ZMI0 780 aa20.88■□□□□ 0.93
USP40-215ENST00000484528 CDHR3Q6ZTQ4 885 aa20.88■□□□□ 0.93
USP40-215ENST00000484528 SYTL1Q8IYJ3 562 aa20.88■□□□□ 0.93
USP40-215ENST00000484528 C1orf54Q8WWF1 131 aa20.88■□□□□ 0.93
USP40-215ENST00000484528 SEC14L1Q92503 715 aa20.88■□□□□ 0.93
USP40-215ENST00000484528 ETNK1Q9HBU6 452 aa20.88■□□□□ 0.93
USP40-215ENST00000484528 PCMTD2Q9NV79 361 aa20.88■□□□□ 0.93
USP40-215ENST00000484528 IMPACTQ9P2X3 320 aa20.88■□□□□ 0.93
USP40-215ENST00000484528 PLAGL1Q9UM63 463 aa20.88■□□□□ 0.93
USP40-215ENST00000484528 SNX7Q9UNH6 387 aa20.88■□□□□ 0.93
USP40-215ENST00000484528 TDRKHQ9Y2W6 561 aaKnown RBP20.88■□□□□ 0.93
USP40-215ENST00000484528 USP9XQ93008 2570 aaPredicted RBP20.88■□□□□ 0.93
USP40-215ENST00000484528 LIASO43766 372 aa20.87■□□□□ 0.93
USP40-215ENST00000484528 OR1I1O60431 355 aa20.87■□□□□ 0.93
USP40-215ENST00000484528 FTH1P02794 183 aa20.87■□□□□ 0.93
USP40-215ENST00000484528 ETS1P14921 441 aa20.87■□□□□ 0.93
USP40-215ENST00000484528 RORAP35398 523 aa20.87■□□□□ 0.93
USP40-215ENST00000484528 MLLT10P55197 1068 aa20.87■□□□□ 0.93
USP40-215ENST00000484528 SNX1Q13596 522 aa20.87■□□□□ 0.93
USP40-215ENST00000484528 OASLQ15646 514 aaKnown RBP20.87■□□□□ 0.93
USP40-215ENST00000484528 DEFB110Q30KQ9 67 aa20.87■□□□□ 0.93
USP40-215ENST00000484528 IZUMO3Q5VZ72 239 aa20.87■□□□□ 0.93
USP40-215ENST00000484528 SPESP1Q6UW49 350 aa20.87■□□□□ 0.93
USP40-215ENST00000484528 FAM198BQ6UWH4 519 aa20.87■□□□□ 0.93
USP40-215ENST00000484528 PACS1Q6VY07 963 aa20.87■□□□□ 0.93
USP40-215ENST00000484528 OR13J1Q8NGT2 312 aa20.87■□□□□ 0.93
USP40-215ENST00000484528 THAP4Q8WY91 577 aa20.87■□□□□ 0.93
USP40-215ENST00000484528 HDAC10Q969S8 669 aa20.87■□□□□ 0.93
USP40-215ENST00000484528 LRFN5Q96NI6 719 aa20.87■□□□□ 0.93
USP40-215ENST00000484528 SLC7A5P2Q9GIP4 190 aa20.87■□□□□ 0.93
USP40-215ENST00000484528 SPTAN1Q13813 2472 aaKnown RBP20.86■□□□□ 0.93
USP40-215ENST00000484528 E7EVH7 732 aa20.86■□□□□ 0.93
USP40-215ENST00000484528 MAP3K7O43318 606 aa20.86■□□□□ 0.93
USP40-215ENST00000484528 GOT2P00505 430 aaKnown RBP20.86■□□□□ 0.93
USP40-215ENST00000484528 GSTM1P09488 218 aa20.86■□□□□ 0.93
USP40-215ENST00000484528 UGT2B7P16662 529 aa20.86■□□□□ 0.93
USP40-215ENST00000484528 PSMA3P25788 255 aa20.86■□□□□ 0.93
USP40-215ENST00000484528 ACADLP28330 430 aa20.86■□□□□ 0.93
USP40-215ENST00000484528 CCL11P51671 97 aa20.86■□□□□ 0.93
USP40-215ENST00000484528 ITGA1P56199 1179 aa20.86■□□□□ 0.93
USP40-215ENST00000484528 GSTM4Q03013 218 aa20.86■□□□□ 0.93
USP40-215ENST00000484528 UNC5AQ6ZN44 842 aa20.86■□□□□ 0.93
USP40-215ENST00000484528 HOOK3Q86VS8 718 aa20.86■□□□□ 0.93
USP40-215ENST00000484528 TBRG4Q969Z0 631 aaKnown RBP eCLIP20.86■□□□□ 0.93
USP40-215ENST00000484528 ZNF778Q96MU6 729 aa20.86■□□□□ 0.93
USP40-215ENST00000484528 SYTL2Q9HCH5 934 aa20.86■□□□□ 0.93
USP40-215ENST00000484528 FAM60AQ9NP50 221 aa20.86■□□□□ 0.93
USP40-215ENST00000484528 ACSS2Q9NR19 701 aa20.86■□□□□ 0.93
USP40-215ENST00000484528 SPHK1Q9NYA1 384 aa20.86■□□□□ 0.93
USP40-215ENST00000484528 ZNF148Q9UQR1 794 aa20.86■□□□□ 0.93
USP40-215ENST00000484528 PCSK5Q92824 1860 aa20.86■□□□□ 0.93
USP40-215ENST00000484528 HEATR9A2RTY3 570 aa20.85■□□□□ 0.93
USP40-215ENST00000484528 ERI2A8K979 691 aaKnown RBP20.85■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms