RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 DAG1Q14118 895 aa14.35□□□□□ -0.11
HDAC6-220ENST00000477528 OR4D1Q15615 310 aa14.35□□□□□ -0.11
HDAC6-220ENST00000477528 NADK2Q4G0N4 442 aa14.35□□□□□ -0.11
HDAC6-220ENST00000477528 LRRC66Q68CR7 880 aa14.35□□□□□ -0.11
HDAC6-220ENST00000477528 CHSY3Q70JA7 882 aa14.35□□□□□ -0.11
HDAC6-220ENST00000477528 NXPE1Q8N323 547 aa14.35□□□□□ -0.11
HDAC6-220ENST00000477528 CD244Q9BZW8 370 aa14.35□□□□□ -0.11
HDAC6-220ENST00000477528 DUS2Q9NX74 493 aaKnown RBP14.35□□□□□ -0.11
HDAC6-220ENST00000477528 ATXN10Q9UBB4 475 aa14.35□□□□□ -0.11
HDAC6-220ENST00000477528 NCKAP1Q9Y2A7 1128 aa14.35□□□□□ -0.11
HDAC6-220ENST00000477528 DRGXA6NNA5 263 aa14.35□□□□□ -0.11
HDAC6-220ENST00000477528 MED26O95402 600 aa14.35□□□□□ -0.11
HDAC6-220ENST00000477528 PRPS1L1P21108 318 aa14.35□□□□□ -0.11
HDAC6-220ENST00000477528 GDF5P43026 501 aa14.35□□□□□ -0.11
HDAC6-220ENST00000477528 GRIK2Q13002 908 aa14.35□□□□□ -0.11
HDAC6-220ENST00000477528 SIM2Q14190 667 aaPredicted RBP14.35□□□□□ -0.11
HDAC6-220ENST00000477528 PSAPL1Q6NUJ1 521 aa14.35□□□□□ -0.11
HDAC6-220ENST00000477528 TLDC1Q6P9B6 456 aa14.35□□□□□ -0.11
HDAC6-220ENST00000477528 GALNT5Q7Z7M9 940 aa14.35□□□□□ -0.11
HDAC6-220ENST00000477528 GPR150Q8NGU9 434 aa14.35□□□□□ -0.11
HDAC6-220ENST00000477528 SMG7Q92540 1137 aaKnown RBP14.35□□□□□ -0.11
HDAC6-220ENST00000477528 PYCR2Q96C36 320 aa14.35□□□□□ -0.11
HDAC6-220ENST00000477528 VPS35Q96QK1 796 aa14.35□□□□□ -0.11
HDAC6-220ENST00000477528 AIF1LQ9BQI0 150 aa14.35□□□□□ -0.11
HDAC6-220ENST00000477528 MGME1Q9BQP7 344 aa14.35□□□□□ -0.11
HDAC6-220ENST00000477528 KATNBL1Q9H079 304 aa14.35□□□□□ -0.11
HDAC6-220ENST00000477528 DNAJC15Q9Y5T4 150 aa14.35□□□□□ -0.11
HDAC6-220ENST00000477528 INPPL1O15357 1258 aa14.35□□□□□ -0.11
HDAC6-220ENST00000477528 PTPN5P54829 565 aa14.35□□□□□ -0.11
HDAC6-220ENST00000477528 C2orf80Q0P641 193 aa14.35□□□□□ -0.11
HDAC6-220ENST00000477528 NFATC2Q13469 925 aa14.35□□□□□ -0.11
HDAC6-220ENST00000477528 C22orf39Q6P5X5 142 aa14.35□□□□□ -0.11
HDAC6-220ENST00000477528 SYVN1Q86TM6 617 aa14.35□□□□□ -0.11
HDAC6-220ENST00000477528 KBTBD6Q86V97 674 aa14.35□□□□□ -0.11
HDAC6-220ENST00000477528 ZDHHC21Q8IVQ6 265 aa14.35□□□□□ -0.11
HDAC6-220ENST00000477528 IGFLR1Q9H665 355 aa14.35□□□□□ -0.11
HDAC6-220ENST00000477528 CAPN10Q9HC96 672 aa14.35□□□□□ -0.11
HDAC6-220ENST00000477528 CCDC177Q9NQR7 707 aaPredicted RBP14.35□□□□□ -0.11
HDAC6-220ENST00000477528 CIDEBQ9UHD4 219 aa14.35□□□□□ -0.11
HDAC6-220ENST00000477528 STK25O00506 426 aa14.34□□□□□ -0.11
HDAC6-220ENST00000477528 LATS1O95835 1130 aa14.34□□□□□ -0.11
HDAC6-220ENST00000477528 GJA1P17302 382 aa14.34□□□□□ -0.11
HDAC6-220ENST00000477528 CTC1Q2NKJ3 1217 aa14.34□□□□□ -0.11
HDAC6-220ENST00000477528 PXYLP1Q8TE99 480 aa14.34□□□□□ -0.11
HDAC6-220ENST00000477528 TMEM74Q96NL1 305 aa14.34□□□□□ -0.11
HDAC6-220ENST00000477528 GJD2Q9UKL4 321 aa14.34□□□□□ -0.11
HDAC6-220ENST00000477528 ATP1B2P14415 290 aaPredicted RBP14.34□□□□□ -0.11
HDAC6-220ENST00000477528 HNF4AP41235 474 aa14.34□□□□□ -0.11
HDAC6-220ENST00000477528 PRKAG1P54619 331 aa14.34□□□□□ -0.11
HDAC6-220ENST00000477528 GNA13Q14344 377 aa14.34□□□□□ -0.11
HDAC6-220ENST00000477528 SEMA3AQ14563 771 aa14.34□□□□□ -0.11
HDAC6-220ENST00000477528 FRG2Q64ET8 278 aa14.34□□□□□ -0.11
HDAC6-220ENST00000477528 RBM23Q86U06 439 aaKnown RBP14.34□□□□□ -0.11
HDAC6-220ENST00000477528 OR5K1Q8NHB7 308 aa14.34□□□□□ -0.11
HDAC6-220ENST00000477528 TADA1Q96BN2 335 aa14.34□□□□□ -0.11
HDAC6-220ENST00000477528 FRG2BQ96QU4 278 aa14.34□□□□□ -0.11
HDAC6-220ENST00000477528 WDR70Q9NW82 654 aa14.34□□□□□ -0.11
HDAC6-220ENST00000477528 CLN6Q9NWW5 311 aa14.34□□□□□ -0.11
HDAC6-220ENST00000477528 LRRC14BA6NHZ5 514 aa14.34□□□□□ -0.11
HDAC6-220ENST00000477528 BMP10O95393 424 aa14.34□□□□□ -0.11
HDAC6-220ENST00000477528 ZNF30P17039 623 aa14.34□□□□□ -0.11
HDAC6-220ENST00000477528 PLEKHG6Q3KR16 790 aa14.34□□□□□ -0.11
HDAC6-220ENST00000477528 GCNT6Q5T4J0 391 aa14.34□□□□□ -0.11
HDAC6-220ENST00000477528 OGFRL1Q5TC84 451 aaPredicted RBP14.34□□□□□ -0.11
HDAC6-220ENST00000477528 CCDC103Q8IW40 242 aa14.34□□□□□ -0.11
HDAC6-220ENST00000477528 HHLA1C9JL84 531 aa14.34□□□□□ -0.11
HDAC6-220ENST00000477528 GM2AP17900 193 aa14.34□□□□□ -0.11
HDAC6-220ENST00000477528 RFX3P48380 749 aa14.34□□□□□ -0.11
HDAC6-220ENST00000477528 ARL4DP49703 201 aa14.34□□□□□ -0.11
HDAC6-220ENST00000477528 SLC16A1P53985 500 aa14.34□□□□□ -0.11
HDAC6-220ENST00000477528 MANFP55145 182 aaKnown RBP14.34□□□□□ -0.11
HDAC6-220ENST00000477528 SH3BP2P78314 561 aa14.34□□□□□ -0.11
HDAC6-220ENST00000477528 Q6ZVU0 165 aa14.34□□□□□ -0.11
HDAC6-220ENST00000477528 CLEC14AQ86T13 490 aa14.34□□□□□ -0.11
HDAC6-220ENST00000477528 CHPFQ8IZ52 775 aa14.34□□□□□ -0.11
HDAC6-220ENST00000477528 WFIKKN2Q8TEU8 576 aa14.34□□□□□ -0.11
HDAC6-220ENST00000477528 BIRC7Q96CA5 298 aa14.34□□□□□ -0.11
HDAC6-220ENST00000477528 MTERF1Q99551 399 aaKnown RBP14.34□□□□□ -0.11
HDAC6-220ENST00000477528 ZSCAN5AQ9BUG6 496 aa14.34□□□□□ -0.11
HDAC6-220ENST00000477528 AIG1Q9NVV5 245 aa14.34□□□□□ -0.11
HDAC6-220ENST00000477528 TMED5Q9Y3A6 229 aa14.34□□□□□ -0.11
HDAC6-220ENST00000477528 SERPINB7O75635 380 aa14.33□□□□□ -0.11
HDAC6-220ENST00000477528 RNASEH2AO75792 299 aaKnown RBP14.33□□□□□ -0.11
HDAC6-220ENST00000477528 CLTBP09497 229 aa14.33□□□□□ -0.11
HDAC6-220ENST00000477528 NR2F1P10589 423 aa14.33□□□□□ -0.11
HDAC6-220ENST00000477528 DDX6P26196 483 aaKnown RBP eCLIP14.33□□□□□ -0.116e-6■■■■□ 19.3
HDAC6-220ENST00000477528 ADRA1AP35348 466 aa14.33□□□□□ -0.11
HDAC6-220ENST00000477528 C1QTNF8P60827 252 aa14.33□□□□□ -0.11
HDAC6-220ENST00000477528 ITGADQ13349 1161 aa14.33□□□□□ -0.11
HDAC6-220ENST00000477528 PLA2G4EQ3MJ16 856 aa14.33□□□□□ -0.11
HDAC6-220ENST00000477528 KANK2Q63ZY3 851 aa14.33□□□□□ -0.11
HDAC6-220ENST00000477528 CHCHD4Q8N4Q1 142 aa14.33□□□□□ -0.11
HDAC6-220ENST00000477528 MINDY1Q8N5J2 469 aa14.33□□□□□ -0.11
HDAC6-220ENST00000477528 ACVR1CQ8NER5 493 aa14.33□□□□□ -0.11
HDAC6-220ENST00000477528 Q96MT0 163 aa14.33□□□□□ -0.11
HDAC6-220ENST00000477528 YIPF2Q9BWQ6 316 aa14.33□□□□□ -0.11
HDAC6-220ENST00000477528 ETAA1Q9NY74 926 aa14.33□□□□□ -0.11
HDAC6-220ENST00000477528 RAB23Q9ULC3 237 aa14.33□□□□□ -0.11
HDAC6-220ENST00000477528 PDE10AQ9Y233 779 aa14.33□□□□□ -0.11
HDAC6-220ENST00000477528 PNMA8CA0A1B0GUJ8 204 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms