RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 FASP25445 335 aa13.46□□□□□ -0.25
CCDC88A-211ENST00000471947 S100A3P33764 101 aa13.46□□□□□ -0.25
CCDC88A-211ENST00000471947 PSRC1Q6PGN9 363 aaPredicted RBP13.46□□□□□ -0.25
CCDC88A-211ENST00000471947 HMGCLL1Q8TB92 370 aa13.46□□□□□ -0.25
CCDC88A-211ENST00000471947 DOK4Q8TEW6 326 aa13.46□□□□□ -0.25
CCDC88A-211ENST00000471947 OTUB1Q96FW1 271 aaPredicted RBP13.46□□□□□ -0.25
CCDC88A-211ENST00000471947 ZFRQ96KR1 1074 aaKnown RBP13.46□□□□□ -0.25
CCDC88A-211ENST00000471947 RANBP9Q96S59 729 aa13.46□□□□□ -0.25
CCDC88A-211ENST00000471947 TCF12Q99081 682 aa13.46□□□□□ -0.25
CCDC88A-211ENST00000471947 MEAF6Q9HAF1 191 aa13.46□□□□□ -0.25
CCDC88A-211ENST00000471947 ELOVL2Q9NXB9 296 aa13.46□□□□□ -0.25
CCDC88A-211ENST00000471947 DEC1Q9P2X7 70 aa13.46□□□□□ -0.25
CCDC88A-211ENST00000471947 ZNF225Q9UK10 706 aa13.46□□□□□ -0.25
CCDC88A-211ENST00000471947 LZTS1Q9Y250 596 aa13.46□□□□□ -0.25
CCDC88A-211ENST00000471947 IFRD1O00458 451 aaPredicted RBP13.46□□□□□ -0.26
CCDC88A-211ENST00000471947 IGHA2P01877 340 aa13.46□□□□□ -0.26
CCDC88A-211ENST00000471947 VARSP26640 1264 aaKnown RBP13.46□□□□□ -0.26
CCDC88A-211ENST00000471947 OR4F3Q6IEY1 312 aa13.46□□□□□ -0.26
CCDC88A-211ENST00000471947 SUSD6Q92537 303 aa13.46□□□□□ -0.26
CCDC88A-211ENST00000471947 FOPNLQ96NB1 174 aa13.46□□□□□ -0.26
CCDC88A-211ENST00000471947 C1orf21Q9H246 121 aa13.46□□□□□ -0.26
CCDC88A-211ENST00000471947 IL37Q9NZH6 218 aa13.46□□□□□ -0.26
CCDC88A-211ENST00000471947 DNAJB13P59910 316 aa13.45□□□□□ -0.26
CCDC88A-211ENST00000471947 RFTN1Q14699 578 aaPredicted RBP13.45□□□□□ -0.26
CCDC88A-211ENST00000471947 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP13.45□□□□□ -0.26
CCDC88A-211ENST00000471947 ISL2Q96A47 359 aa13.45□□□□□ -0.26
CCDC88A-211ENST00000471947 KXD1Q9BQD3 176 aa13.45□□□□□ -0.26
CCDC88A-211ENST00000471947 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.45□□□□□ -0.26
CCDC88A-211ENST00000471947 CMTM6Q9NX76 183 aa13.45□□□□□ -0.26
CCDC88A-211ENST00000471947 AASSQ9UDR5 926 aa13.45□□□□□ -0.26
CCDC88A-211ENST00000471947 VCANP13611 3396 aa13.45□□□□□ -0.26
CCDC88A-211ENST00000471947 H0Y858 1186 aa13.45□□□□□ -0.26
CCDC88A-211ENST00000471947 EI24O14681 340 aa13.45□□□□□ -0.26
CCDC88A-211ENST00000471947 ARPC2O15144 300 aa13.45□□□□□ -0.26
CCDC88A-211ENST00000471947 RGS14O43566 566 aa13.45□□□□□ -0.26
CCDC88A-211ENST00000471947 COX7A2P14406 83 aa13.45□□□□□ -0.26
CCDC88A-211ENST00000471947 TACR1P25103 407 aa13.45□□□□□ -0.26
CCDC88A-211ENST00000471947 NSG1P42857 185 aa13.45□□□□□ -0.26
CCDC88A-211ENST00000471947 POLR2LP62875 67 aaKnown RBP13.45□□□□□ -0.26
CCDC88A-211ENST00000471947 ACSM2AQ08AH3 577 aa13.45□□□□□ -0.26
CCDC88A-211ENST00000471947 ADGRE1Q14246 886 aa13.45□□□□□ -0.26
CCDC88A-211ENST00000471947 ACSM2BQ68CK6 577 aa13.45□□□□□ -0.26
CCDC88A-211ENST00000471947 ZCCHC8Q6NZY4 707 aaKnown RBP13.45□□□□□ -0.26
CCDC88A-211ENST00000471947 FBXL20Q96IG2 436 aa13.45□□□□□ -0.26
CCDC88A-211ENST00000471947 ITCHQ96J02 903 aa13.45□□□□□ -0.26
CCDC88A-211ENST00000471947 KLHL25Q9H0H3 589 aa13.45□□□□□ -0.26
CCDC88A-211ENST00000471947 BATF3Q9NR55 127 aa13.45□□□□□ -0.26
CCDC88A-211ENST00000471947 K7ESM1 405 aa13.44□□□□□ -0.26
CCDC88A-211ENST00000471947 TULP3O75386 442 aa13.44□□□□□ -0.26
CCDC88A-211ENST00000471947 ARHGEF15O94989 841 aa13.44□□□□□ -0.26
CCDC88A-211ENST00000471947 GNRH1P01148 92 aa13.44□□□□□ -0.26
CCDC88A-211ENST00000471947 OPN1SWP03999 348 aa13.44□□□□□ -0.26
CCDC88A-211ENST00000471947 LINGO3P0C6S8 592 aa13.44□□□□□ -0.26
CCDC88A-211ENST00000471947 ACRV1P26436 265 aa13.44□□□□□ -0.26
CCDC88A-211ENST00000471947 GNPDA1P46926 289 aa13.44□□□□□ -0.26
CCDC88A-211ENST00000471947 XIAPP98170 497 aa13.44□□□□□ -0.26
CCDC88A-211ENST00000471947 INO80DQ53TQ3 878 aaPredicted RBP13.44□□□□□ -0.26
CCDC88A-211ENST00000471947 OR5AK3PQ8NH89 298 aa13.44□□□□□ -0.26
CCDC88A-211ENST00000471947 FZD3Q9NPG1 666 aa13.44□□□□□ -0.26
CCDC88A-211ENST00000471947 LEF1Q9UJU2 399 aaPredicted RBP13.44□□□□□ -0.26
CCDC88A-211ENST00000471947 PDCD11Q14690 1871 aaKnown RBP13.44□□□□□ -0.26
CCDC88A-211ENST00000471947 MGAT4DA6NG13 374 aa13.44□□□□□ -0.26
CCDC88A-211ENST00000471947 PAK4O96013 591 aaPredicted RBP13.44□□□□□ -0.26
CCDC88A-211ENST00000471947 PTSQ03393 145 aa13.44□□□□□ -0.26
CCDC88A-211ENST00000471947 CHRNB3Q05901 458 aa13.44□□□□□ -0.26
CCDC88A-211ENST00000471947 GREB1Q4ZG55 1949 aa13.44□□□□□ -0.26
CCDC88A-211ENST00000471947 NANOGP8Q6NSW7 305 aa13.44□□□□□ -0.26
CCDC88A-211ENST00000471947 CCDC138Q96M89 665 aa13.44□□□□□ -0.26
CCDC88A-211ENST00000471947 DPH2Q9BQC3 489 aaPredicted RBP13.44□□□□□ -0.26
CCDC88A-211ENST00000471947 NANOGQ9H9S0 305 aa13.44□□□□□ -0.26
CCDC88A-211ENST00000471947 LTB4R2Q9NPC1 389 aa13.44□□□□□ -0.26
CCDC88A-211ENST00000471947 MAP10Q9P2G4 905 aa13.44□□□□□ -0.26
CCDC88A-211ENST00000471947 hCG_2039718K7EN88 272 aa13.44□□□□□ -0.26
CCDC88A-211ENST00000471947 CLOCKO15516 846 aa13.44□□□□□ -0.26
CCDC88A-211ENST00000471947 CYP2A7P20853 494 aa13.44□□□□□ -0.26
CCDC88A-211ENST00000471947 GPX3P22352 226 aa13.44□□□□□ -0.26
CCDC88A-211ENST00000471947 TIE1P35590 1138 aa13.44□□□□□ -0.26
CCDC88A-211ENST00000471947 POLD2P49005 469 aa13.44□□□□□ -0.26
CCDC88A-211ENST00000471947 ERAP2Q6P179 960 aa13.44□□□□□ -0.26
CCDC88A-211ENST00000471947 Q6ZSR9 355 aa13.44□□□□□ -0.26
CCDC88A-211ENST00000471947 KBTBD6Q86V97 674 aa13.44□□□□□ -0.26
CCDC88A-211ENST00000471947 PANX1Q96RD7 426 aa13.44□□□□□ -0.26
CCDC88A-211ENST00000471947 MACROD1Q9BQ69 325 aa13.44□□□□□ -0.26
CCDC88A-211ENST00000471947 SLC6A17Q9H1V8 727 aa13.44□□□□□ -0.26
CCDC88A-211ENST00000471947 MAGEE1Q9HCI5 957 aa13.44□□□□□ -0.26
CCDC88A-211ENST00000471947 IMP3Q9NV31 184 aaKnown RBP13.44□□□□□ -0.26
CCDC88A-211ENST00000471947 RAPGEFL1Q9UHV5 662 aa13.44□□□□□ -0.26
CCDC88A-211ENST00000471947 C16orf96A6NNT2 1141 aa13.43□□□□□ -0.26
CCDC88A-211ENST00000471947 K7EPI3 171 aa13.43□□□□□ -0.26
CCDC88A-211ENST00000471947 FOXD2O60548 495 aaPredicted RBP13.43□□□□□ -0.26
CCDC88A-211ENST00000471947 RSL1D1O76021 490 aaKnown RBP13.43□□□□□ -0.26
CCDC88A-211ENST00000471947 GNAO1P09471 354 aa13.43□□□□□ -0.26
CCDC88A-211ENST00000471947 IL12AP29459 219 aa13.43□□□□□ -0.26
CCDC88A-211ENST00000471947 GPM6BQ13491 265 aa13.43□□□□□ -0.26
CCDC88A-211ENST00000471947 DHCR24Q15392 516 aa13.43□□□□□ -0.26
CCDC88A-211ENST00000471947 PGM2L1Q6PCE3 622 aa13.43□□□□□ -0.26
CCDC88A-211ENST00000471947 CERS6Q6ZMG9 384 aa13.43□□□□□ -0.26
CCDC88A-211ENST00000471947 CCDC81Q6ZN84 652 aa13.43□□□□□ -0.26
CCDC88A-211ENST00000471947 P2RY13Q9BPV8 354 aa13.43□□□□□ -0.26
CCDC88A-211ENST00000471947 TRIM15Q9C019 465 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms