RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 MAP9Q49MG5 647 aa11.63□□□□□ -0.55
VPS13D-204ENST00000469054 GRTP1Q5TC63 336 aa11.63□□□□□ -0.55
VPS13D-204ENST00000469054 TMEM71Q6P5X7 295 aa11.63□□□□□ -0.55
VPS13D-204ENST00000469054 KLHL35Q6PF15 583 aa11.63□□□□□ -0.55
VPS13D-204ENST00000469054 UNC5DQ6UXZ4 953 aa11.63□□□□□ -0.55
VPS13D-204ENST00000469054 CCNI2Q6ZMN8 369 aaPredicted RBP11.63□□□□□ -0.55
VPS13D-204ENST00000469054 NEK10Q6ZWH5 1172 aa11.63□□□□□ -0.55
VPS13D-204ENST00000469054 TRMT10CQ7L0Y3 403 aaKnown RBP11.63□□□□□ -0.55
VPS13D-204ENST00000469054 TMPRSS9Q7Z410 1059 aa11.63□□□□□ -0.55
VPS13D-204ENST00000469054 MARCH9Q86YJ5 346 aa11.63□□□□□ -0.55
VPS13D-204ENST00000469054 GSPT2Q8IYD1 628 aaKnown RBP11.63□□□□□ -0.55
VPS13D-204ENST00000469054 OR52E1Q8NGJ3 308 aa11.63□□□□□ -0.55
VPS13D-204ENST00000469054 OR5K2Q8NHB8 316 aa11.63□□□□□ -0.55
VPS13D-204ENST00000469054 SKA2Q8WVK7 121 aaPredicted RBP11.63□□□□□ -0.55
VPS13D-204ENST00000469054 JPH3Q8WXH2 748 aaPredicted RBP11.63□□□□□ -0.55
VPS13D-204ENST00000469054 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP11.63□□□□□ -0.55
VPS13D-204ENST00000469054 NCSTNQ92542 709 aa11.63□□□□□ -0.55
VPS13D-204ENST00000469054 GRAMD1AQ96CP6 724 aa11.63□□□□□ -0.55
VPS13D-204ENST00000469054 ELMO2Q96JJ3 720 aa11.63□□□□□ -0.55
VPS13D-204ENST00000469054 FOPNLQ96NB1 174 aa11.63□□□□□ -0.55
VPS13D-204ENST00000469054 DEPDC7Q96QD5 511 aa11.63□□□□□ -0.55
VPS13D-204ENST00000469054 CYTH2Q99418 400 aa11.63□□□□□ -0.55
VPS13D-204ENST00000469054 OLFM1Q99784 485 aa11.63□□□□□ -0.55
VPS13D-204ENST00000469054 NUDT22Q9BRQ3 303 aa11.63□□□□□ -0.55
VPS13D-204ENST00000469054 HGH1Q9BTY7 390 aa11.63□□□□□ -0.55
VPS13D-204ENST00000469054 SCNM1Q9BWG6 230 aa11.63□□□□□ -0.55
VPS13D-204ENST00000469054 TXLNGYQ9BZA5 131 aa11.63□□□□□ -0.55
VPS13D-204ENST00000469054 TFB2MQ9H5Q4 396 aaKnown RBP11.63□□□□□ -0.55
VPS13D-204ENST00000469054 ACSS3Q9H6R3 686 aa11.63□□□□□ -0.55
VPS13D-204ENST00000469054 OGFRQ9NZT2 677 aa11.63□□□□□ -0.55
VPS13D-204ENST00000469054 ASXL3Q9C0F0 2248 aa11.63□□□□□ -0.55
VPS13D-204ENST00000469054 TMX2-CTNND1H3BSU7 103 aa11.62□□□□□ -0.55
VPS13D-204ENST00000469054 EIF3FO00303 357 aaPredicted RBP11.62□□□□□ -0.55
VPS13D-204ENST00000469054 MATN4O95460 622 aa11.62□□□□□ -0.55
VPS13D-204ENST00000469054 C1orf105O95561 183 aa11.62□□□□□ -0.55
VPS13D-204ENST00000469054 MPC1LP0DKB6 136 aa11.62□□□□□ -0.55
VPS13D-204ENST00000469054 SPINK2P20155 84 aa11.62□□□□□ -0.55
VPS13D-204ENST00000469054 SAT1P21673 171 aa11.62□□□□□ -0.55
VPS13D-204ENST00000469054 MCM3P25205 808 aa11.62□□□□□ -0.55
VPS13D-204ENST00000469054 CAPZBP47756 277 aa11.62□□□□□ -0.55
VPS13D-204ENST00000469054 INHBCP55103 352 aa11.62□□□□□ -0.55
VPS13D-204ENST00000469054 SHC2P98077 582 aa11.62□□□□□ -0.55
VPS13D-204ENST00000469054 ZFP36L1Q07352 338 aaKnown RBP11.62□□□□□ -0.55
VPS13D-204ENST00000469054 WDR74Q6RFH5 385 aaPredicted RBP11.62□□□□□ -0.55
VPS13D-204ENST00000469054 PAQR3Q6TCH7 311 aa11.62□□□□□ -0.55
VPS13D-204ENST00000469054 CYHR1Q6ZMK1 362 aa11.62□□□□□ -0.55
VPS13D-204ENST00000469054 ZNF574Q6ZN55 896 aaPredicted RBP11.62□□□□□ -0.55
VPS13D-204ENST00000469054 PLXDC1Q8IUK5 500 aa11.62□□□□□ -0.55
VPS13D-204ENST00000469054 SPNS2Q8IVW8 549 aa11.62□□□□□ -0.55
VPS13D-204ENST00000469054 DCUN1D3Q8IWE4 304 aa11.62□□□□□ -0.55
VPS13D-204ENST00000469054 CPNE9Q8IYJ1 553 aa11.62□□□□□ -0.55
VPS13D-204ENST00000469054 OR4E2Q8NGC2 313 aa11.62□□□□□ -0.55
VPS13D-204ENST00000469054 OR4D9Q8NGE8 314 aa11.62□□□□□ -0.55
VPS13D-204ENST00000469054 LCN9Q8WX39 176 aa11.62□□□□□ -0.55
VPS13D-204ENST00000469054 RSC1A1Q92681 617 aa11.62□□□□□ -0.55
VPS13D-204ENST00000469054 TMEM74Q96NL1 305 aa11.62□□□□□ -0.55
VPS13D-204ENST00000469054 RBBP8Q99708 897 aa11.62□□□□□ -0.55
VPS13D-204ENST00000469054 RAB33BQ9H082 229 aa11.62□□□□□ -0.55
VPS13D-204ENST00000469054 ZMYND15Q9H091 742 aa11.62□□□□□ -0.55
VPS13D-204ENST00000469054 SRMSQ9H3Y6 488 aa11.62□□□□□ -0.55
VPS13D-204ENST00000469054 EPHA6Q9UF33 1036 aa11.62□□□□□ -0.55
VPS13D-204ENST00000469054 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.62□□□□□ -0.55
VPS13D-204ENST00000469054 TSR3Q9UJK0 312 aaKnown RBP11.62□□□□□ -0.55
VPS13D-204ENST00000469054 KLK13Q9UKR3 277 aa11.62□□□□□ -0.55
VPS13D-204ENST00000469054 RUVBL2Q9Y230 463 aaKnown RBP11.62□□□□□ -0.55
VPS13D-204ENST00000469054 TDRKHQ9Y2W6 561 aaKnown RBP11.62□□□□□ -0.55
VPS13D-204ENST00000469054 NEUROG3Q9Y4Z2 214 aa11.62□□□□□ -0.55
VPS13D-204ENST00000469054 ENTPD2Q9Y5L3 495 aa11.62□□□□□ -0.55
VPS13D-204ENST00000469054 NFS1Q9Y697 457 aa11.62□□□□□ -0.55
VPS13D-204ENST00000469054 V9GYY5 206 aaPredicted RBP11.62□□□□□ -0.55
VPS13D-204ENST00000469054 BPTFQ12830 3046 aa11.62□□□□□ -0.55
VPS13D-204ENST00000469054 SPTBN4Q9H254 2564 aa11.61□□□□□ -0.55
VPS13D-204ENST00000469054 A0A087WUV0 522 aaPredicted RBP11.61□□□□□ -0.55
VPS13D-204ENST00000469054 IGHV5-10-1A0A0J9YXX1 117 aa11.61□□□□□ -0.55
VPS13D-204ENST00000469054 OR5K3A6NET4 321 aa11.61□□□□□ -0.55
VPS13D-204ENST00000469054 RIPK2O43353 540 aa11.61□□□□□ -0.55
VPS13D-204ENST00000469054 KDM1AO60341 852 aa11.61□□□□□ -0.55
VPS13D-204ENST00000469054 FAM155BO75949 473 aa11.61□□□□□ -0.55
VPS13D-204ENST00000469054 ABHD2P08910 425 aa11.61□□□□□ -0.55
VPS13D-204ENST00000469054 MPSTP25325 297 aa11.61□□□□□ -0.55
VPS13D-204ENST00000469054 CCKBRP32239 447 aa11.61□□□□□ -0.55
VPS13D-204ENST00000469054 SPRP35270 261 aaPredicted RBP11.61□□□□□ -0.55
VPS13D-204ENST00000469054 CCNFP41002 786 aa11.61□□□□□ -0.55
VPS13D-204ENST00000469054 RGS4P49798 205 aa11.61□□□□□ -0.55
VPS13D-204ENST00000469054 PGGT1BP53609 377 aa11.61□□□□□ -0.55
VPS13D-204ENST00000469054 LIMK2P53671 638 aa11.61□□□□□ -0.55
VPS13D-204ENST00000469054 TAS2R39P59534 338 aa11.61□□□□□ -0.55
VPS13D-204ENST00000469054 VSNL1P62760 191 aa11.61□□□□□ -0.55
VPS13D-204ENST00000469054 POU4F1Q01851 419 aa11.61□□□□□ -0.55
VPS13D-204ENST00000469054 ERCC6LQ2NKX8 1250 aa11.61□□□□□ -0.55
VPS13D-204ENST00000469054 LRRC8EQ6NSJ5 796 aa11.61□□□□□ -0.55
VPS13D-204ENST00000469054 TTC23LQ6PF05 361 aa11.61□□□□□ -0.55
VPS13D-204ENST00000469054 B3GNT8Q7Z7M8 397 aa11.61□□□□□ -0.55
VPS13D-204ENST00000469054 AMIGO1Q86WK6 493 aa11.61□□□□□ -0.55
VPS13D-204ENST00000469054 OOSP2Q86WS3 158 aa11.61□□□□□ -0.55
VPS13D-204ENST00000469054 SLITRK4Q8IW52 837 aa11.61□□□□□ -0.55
VPS13D-204ENST00000469054 MAGEC3Q8TD91 643 aa11.61□□□□□ -0.55
VPS13D-204ENST00000469054 EEF1AKMT1Q8WVE0 214 aa11.61□□□□□ -0.55
VPS13D-204ENST00000469054 RAD51AP1Q96B01 352 aa11.61□□□□□ -0.55
VPS13D-204ENST00000469054 MRRFQ96E11 262 aaKnown RBP11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms