RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 PIGUQ9H490 435 aa16.9■□□□□ 0.3
PTPRF-209ENST00000438120 TBC1D17Q9HA65 648 aa16.9■□□□□ 0.3
PTPRF-209ENST00000438120 LYNP07948 512 aa16.9■□□□□ 0.3
PTPRF-209ENST00000438120 BANPQ8N9N5 519 aa16.9■□□□□ 0.3
PTPRF-209ENST00000438120 WBP11Q9Y2W2 641 aaKnown RBP16.9■□□□□ 0.3
PTPRF-209ENST00000438120 A8MUA0 341 aa16.89■□□□□ 0.3
PTPRF-209ENST00000438120 PDPK1O15530 556 aa16.89■□□□□ 0.3
PTPRF-209ENST00000438120 SHOX2O60902 331 aaPredicted RBP16.89■□□□□ 0.3
PTPRF-209ENST00000438120 XIAPP98170 497 aa16.89■□□□□ 0.3
PTPRF-209ENST00000438120 HFE2Q6ZVN8 426 aa16.89■□□□□ 0.3
PTPRF-209ENST00000438120 CARS2Q9HA77 564 aaKnown RBP16.89■□□□□ 0.3
PTPRF-209ENST00000438120 IFT80Q9P2H3 777 aaPredicted RBP16.89■□□□□ 0.3
PTPRF-209ENST00000438120 CDH7Q9ULB5 785 aa16.89■□□□□ 0.3
PTPRF-209ENST00000438120 RPL26L1Q9UNX3 145 aaKnown RBP16.89■□□□□ 0.3
PTPRF-209ENST00000438120 SIX3O95343 332 aaPredicted RBP16.89■□□□□ 0.29
PTPRF-209ENST00000438120 TGFB1P01137 390 aa16.89■□□□□ 0.29
PTPRF-209ENST00000438120 GNAZP19086 355 aa16.89■□□□□ 0.29
PTPRF-209ENST00000438120 ALDH4A1P30038 563 aa16.89■□□□□ 0.29
PTPRF-209ENST00000438120 AVPR1BP47901 424 aa16.89■□□□□ 0.29
PTPRF-209ENST00000438120 NCBP2P52298 156 aaKnown RBP eCLIP16.89■□□□□ 0.292e-6■■□□□ 12.6
PTPRF-209ENST00000438120 UBE2J2Q8N2K1 259 aa16.89■□□□□ 0.29
PTPRF-209ENST00000438120 BRI3BPQ8WY22 251 aa16.89■□□□□ 0.29
PTPRF-209ENST00000438120 J3KR12 359 aa16.89■□□□□ 0.29
PTPRF-209ENST00000438120 ZDHHC21Q8IVQ6 265 aa16.89■□□□□ 0.29
PTPRF-209ENST00000438120 POP5Q969H6 163 aaKnown RBP16.89■□□□□ 0.29
PTPRF-209ENST00000438120 POLMQ9NP87 494 aaPredicted RBP16.89■□□□□ 0.29
PTPRF-209ENST00000438120 ADAP2Q9NPF8 381 aa16.89■□□□□ 0.29
PTPRF-209ENST00000438120 COPS7AQ9UBW8 275 aa16.89■□□□□ 0.29
PTPRF-209ENST00000438120 IL36AQ9UHA7 158 aa16.89■□□□□ 0.29
PTPRF-209ENST00000438120 LGALS13Q9UHV8 139 aa16.89■□□□□ 0.29
PTPRF-209ENST00000438120 CHST10O43529 356 aa16.89■□□□□ 0.29
PTPRF-209ENST00000438120 HMGCS1Q01581 520 aa16.89■□□□□ 0.29
PTPRF-209ENST00000438120 TLE2Q04725 743 aa16.89■□□□□ 0.29
PTPRF-209ENST00000438120 ARHGAP1Q07960 439 aa16.89■□□□□ 0.29
PTPRF-209ENST00000438120 DPYSL2Q16555 572 aa16.89■□□□□ 0.29
PTPRF-209ENST00000438120 PDE12Q6L8Q7 609 aaKnown RBP16.89■□□□□ 0.29
PTPRF-209ENST00000438120 RANBP3LQ86VV4 465 aaPredicted RBP16.89■□□□□ 0.29
PTPRF-209ENST00000438120 SLC13A3Q8WWT9 602 aa16.89■□□□□ 0.29
PTPRF-209ENST00000438120 RSL1D1O76021 490 aaKnown RBP16.89■□□□□ 0.29
PTPRF-209ENST00000438120 RGS20O76081 388 aa16.89■□□□□ 0.29
PTPRF-209ENST00000438120 MTHFD1P11586 935 aaKnown RBP16.89■□□□□ 0.29
PTPRF-209ENST00000438120 ECT2LQ008S8 904 aa16.89■□□□□ 0.29
PTPRF-209ENST00000438120 METTL21CQ5VZV1 264 aa16.89■□□□□ 0.29
PTPRF-209ENST00000438120 TMEM198Q66K66 360 aa16.89■□□□□ 0.29
PTPRF-209ENST00000438120 FBXL22Q6P050 247 aa16.89■□□□□ 0.29
PTPRF-209ENST00000438120 MTMR14Q8NCE2 650 aa16.89■□□□□ 0.29
PTPRF-209ENST00000438120 NKD1Q969G9 470 aa16.89■□□□□ 0.29
PTPRF-209ENST00000438120 C1QTNF1Q9BXJ1 281 aa16.89■□□□□ 0.29
PTPRF-209ENST00000438120 ZNF304Q9HCX3 659 aa16.89■□□□□ 0.29
PTPRF-209ENST00000438120 PCDHGA11Q9Y5H2 935 aa16.89■□□□□ 0.29
PTPRF-209ENST00000438120 B4DGG1 531 aa16.88■□□□□ 0.29
PTPRF-209ENST00000438120 CA12O43570 354 aa16.88■□□□□ 0.29
PTPRF-209ENST00000438120 OGNP20774 298 aaKnown RBP16.88■□□□□ 0.29
PTPRF-209ENST00000438120 ACVRL1P37023 503 aa16.88■□□□□ 0.29
PTPRF-209ENST00000438120 KCNQ1P51787 676 aa16.88■□□□□ 0.29
PTPRF-209ENST00000438120 NCBP2-AS2Q69YL0 99 aa16.88■□□□□ 0.29
PTPRF-209ENST00000438120 LRP10Q7Z4F1 713 aa16.88■□□□□ 0.29
PTPRF-209ENST00000438120 TVP23BQ9NYZ1 205 aa16.88■□□□□ 0.29
PTPRF-209ENST00000438120 GADD45GO95257 159 aa16.88■□□□□ 0.29
PTPRF-209ENST00000438120 TGFBR2P37173 567 aa16.88■□□□□ 0.29
PTPRF-209ENST00000438120 OLIG2Q13516 323 aa16.88■□□□□ 0.29
PTPRF-209ENST00000438120 KHDC1Q4VXA5 237 aaKnown RBP16.88■□□□□ 0.29
PTPRF-209ENST00000438120 RNF19BQ6ZMZ0 732 aa16.88■□□□□ 0.29
PTPRF-209ENST00000438120 OR10H4Q8NGA5 316 aa16.88■□□□□ 0.29
PTPRF-209ENST00000438120 C2orf15Q8WU43 125 aaKnown RBP16.88■□□□□ 0.29
PTPRF-209ENST00000438120 ATRNL1Q5VV63 1379 aa16.88■□□□□ 0.29
PTPRF-209ENST00000438120 SCELO95171 688 aa16.88■□□□□ 0.29
PTPRF-209ENST00000438120 PSMA1P25786 263 aaKnown RBP16.88■□□□□ 0.29
PTPRF-209ENST00000438120 GDI1P31150 447 aa16.88■□□□□ 0.29
PTPRF-209ENST00000438120 NFKB2Q00653 900 aa16.88■□□□□ 0.29
PTPRF-209ENST00000438120 LRRC32Q14392 662 aa16.88■□□□□ 0.29
PTPRF-209ENST00000438120 IQCHQ86VS3 1027 aa16.88■□□□□ 0.29
PTPRF-209ENST00000438120 IFNL1Q8IU54 200 aa16.88■□□□□ 0.29
PTPRF-209ENST00000438120 OR5AK3PQ8NH89 298 aa16.88■□□□□ 0.29
PTPRF-209ENST00000438120 TBX5Q99593 518 aa16.88■□□□□ 0.29
PTPRF-209ENST00000438120 KCNS3Q9BQ31 491 aa16.88■□□□□ 0.29
PTPRF-209ENST00000438120 COPS4Q9BT78 406 aa16.88■□□□□ 0.29
PTPRF-209ENST00000438120 C11orf84Q9BUA3 381 aaPredicted RBP16.88■□□□□ 0.29
PTPRF-209ENST00000438120 DUSP26Q9BV47 211 aa16.88■□□□□ 0.29
PTPRF-209ENST00000438120 PLEKHA1Q9HB21 404 aa16.88■□□□□ 0.29
PTPRF-209ENST00000438120 INTS10Q9NVR2 710 aaKnown RBP16.88■□□□□ 0.29
PTPRF-209ENST00000438120 CORO1CQ9ULV4 474 aaPredicted RBP16.88■□□□□ 0.29
PTPRF-209ENST00000438120 MED31Q9Y3C7 131 aa16.88■□□□□ 0.29
PTPRF-209ENST00000438120 YIPF1Q9Y548 306 aa16.88■□□□□ 0.29
PTPRF-209ENST00000438120 E7ENX8 843 aa16.88■□□□□ 0.29
PTPRF-209ENST00000438120 AOC2O75106 756 aa16.88■□□□□ 0.29
PTPRF-209ENST00000438120 PRPS2P11908 318 aa16.88■□□□□ 0.29
PTPRF-209ENST00000438120 DGKEP52429 567 aa16.88■□□□□ 0.29
PTPRF-209ENST00000438120 GPM6BQ13491 265 aa16.88■□□□□ 0.29
PTPRF-209ENST00000438120 FBXO42Q6P3S6 717 aa16.88■□□□□ 0.29
PTPRF-209ENST00000438120 LNX2Q8N448 690 aa16.88■□□□□ 0.29
PTPRF-209ENST00000438120 DGCR14Q96DF8 476 aaKnown RBP16.88■□□□□ 0.29
PTPRF-209ENST00000438120 CADM1Q9BY67 442 aaKnown RBP16.88■□□□□ 0.29
PTPRF-209ENST00000438120 SUV39H2Q9H5I1 410 aa16.88■□□□□ 0.29
PTPRF-209ENST00000438120 ERVK-11Q9UQG0 969 aa16.88■□□□□ 0.29
PTPRF-209ENST00000438120 XKR4Q5GH76 650 aa16.88■□□□□ 0.29
PTPRF-209ENST00000438120 CENPNQ96H22 339 aaPredicted RBP16.88■□□□□ 0.29
PTPRF-209ENST00000438120 PCDHAC1Q9H158 963 aa16.88■□□□□ 0.29
PTPRF-209ENST00000438120 PNO1Q9NRX1 252 aaKnown RBP16.88■□□□□ 0.29
PTPRF-209ENST00000438120 NPHS1O60500 1241 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms