RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 AP4B1Q9Y6B7 739 aa14.54□□□□□ -0.08
USP4-203ENST00000415188 TRBV5-4A0A0C4DH59 114 aa14.53□□□□□ -0.08
USP4-203ENST00000415188 SMIM31A0A1B0GVY4 71 aa14.53□□□□□ -0.08
USP4-203ENST00000415188 FAM234BA2RU67 622 aa14.53□□□□□ -0.08
USP4-203ENST00000415188 RAD51BO15315 384 aa14.53□□□□□ -0.08
USP4-203ENST00000415188 ATG13O75143 517 aa14.53□□□□□ -0.08
USP4-203ENST00000415188 NFATC1O95644 943 aa14.53□□□□□ -0.08
USP4-203ENST00000415188 CYP17A1P05093 508 aa14.53□□□□□ -0.08
USP4-203ENST00000415188 HK3P52790 923 aa14.53□□□□□ -0.08
USP4-203ENST00000415188 FOXK2Q01167 660 aa14.53□□□□□ -0.08
USP4-203ENST00000415188 CREB5Q02930 508 aa14.53□□□□□ -0.08
USP4-203ENST00000415188 BCL2L1Q07817 233 aa14.53□□□□□ -0.08
USP4-203ENST00000415188 PUM1Q14671 1186 aaKnown RBP eCLIP14.53□□□□□ -0.08
USP4-203ENST00000415188 TGFBIQ15582 683 aa14.53□□□□□ -0.08
USP4-203ENST00000415188 GPR33Q49SQ1 333 aa14.53□□□□□ -0.08
USP4-203ENST00000415188 LIN52Q52LA3 116 aa14.53□□□□□ -0.08
USP4-203ENST00000415188 RNF220Q5VTB9 566 aa14.53□□□□□ -0.08
USP4-203ENST00000415188 PTRHD1Q6GMV3 140 aaKnown RBP14.53□□□□□ -0.08
USP4-203ENST00000415188 FRA10AC1Q70Z53 315 aa14.53□□□□□ -0.08
USP4-203ENST00000415188 CEP68Q76N32 757 aa14.53□□□□□ -0.08
USP4-203ENST00000415188 LYSMD3Q7Z3D4 306 aa14.53□□□□□ -0.08
USP4-203ENST00000415188 DGLUCYQ7Z3D6 616 aa14.53□□□□□ -0.08
USP4-203ENST00000415188 CBARPQ8N350 705 aaPredicted RBP14.53□□□□□ -0.08
USP4-203ENST00000415188 PACRGLQ8N7B6 248 aa14.53□□□□□ -0.08
USP4-203ENST00000415188 ANKFN1Q8N957 763 aa14.53□□□□□ -0.08
USP4-203ENST00000415188 RPLP0P6Q8NHW5 317 aa14.53□□□□□ -0.08
USP4-203ENST00000415188 HHIPQ96QV1 700 aa14.53□□□□□ -0.08
USP4-203ENST00000415188 OSBPL11Q9BXB4 747 aa14.53□□□□□ -0.08
USP4-203ENST00000415188 PCDHAC1Q9H158 963 aa14.53□□□□□ -0.08
USP4-203ENST00000415188 ZNF696Q9H7X3 374 aa14.53□□□□□ -0.08
USP4-203ENST00000415188 BPIFA1Q9NP55 256 aa14.53□□□□□ -0.08
USP4-203ENST00000415188 SLC52A3Q9NQ40 469 aa14.53□□□□□ -0.08
USP4-203ENST00000415188 ACTR3BQ9P1U1 418 aa14.53□□□□□ -0.08
USP4-203ENST00000415188 KLHL42Q9P2K6 505 aa14.53□□□□□ -0.08
USP4-203ENST00000415188 GALPQ9UBC7 116 aa14.53□□□□□ -0.08
USP4-203ENST00000415188 SUN2Q9UH99 717 aa14.53□□□□□ -0.08
USP4-203ENST00000415188 PADI4Q9UM07 663 aa14.53□□□□□ -0.08
USP4-203ENST00000415188 FCF1Q9Y324 198 aaKnown RBP14.53□□□□□ -0.08
USP4-203ENST00000415188 CACNA1AO00555 2505 aa14.53□□□□□ -0.08
USP4-203ENST00000415188 FXYD1O00168 92 aa14.52□□□□□ -0.08
USP4-203ENST00000415188 NME4O00746 187 aa14.52□□□□□ -0.08
USP4-203ENST00000415188 HNRNPRO43390 633 aaKnown RBP14.52□□□□□ -0.08
USP4-203ENST00000415188 TNFAIP8O95379 198 aa14.52□□□□□ -0.08
USP4-203ENST00000415188 IGSF6O95976 241 aa14.52□□□□□ -0.08
USP4-203ENST00000415188 RETP07949 1114 aa14.52□□□□□ -0.08
USP4-203ENST00000415188 PABPC4LP0CB38 370 aaKnown RBP14.52□□□□□ -0.08
USP4-203ENST00000415188 BMP2P12643 396 aa14.52□□□□□ -0.08
USP4-203ENST00000415188 MSH3P20585 1137 aa14.52□□□□□ -0.08
USP4-203ENST00000415188 DGKAP23743 735 aa14.52□□□□□ -0.08
USP4-203ENST00000415188 CNR2P34972 360 aa14.52□□□□□ -0.08
USP4-203ENST00000415188 OPRD1P41143 372 aa14.52□□□□□ -0.08
USP4-203ENST00000415188 AGTR2P50052 363 aa14.52□□□□□ -0.08
USP4-203ENST00000415188 SMU1Q2TAY7 513 aa14.52□□□□□ -0.08
USP4-203ENST00000415188 MPPE1Q53F39 396 aa14.52□□□□□ -0.08
USP4-203ENST00000415188 LAYNQ6UX15 382 aa14.52□□□□□ -0.08
USP4-203ENST00000415188 HTR3DQ70Z44 454 aa14.52□□□□□ -0.08
USP4-203ENST00000415188 SLC15A3Q8IY34 581 aa14.52□□□□□ -0.08
USP4-203ENST00000415188 FAM160A2Q8N612 972 aaPredicted RBP14.52□□□□□ -0.08
USP4-203ENST00000415188 UBTD2Q8WUN7 234 aa14.52□□□□□ -0.08
USP4-203ENST00000415188 EME1Q96AY2 570 aa14.52□□□□□ -0.08
USP4-203ENST00000415188 LRRC58Q96CX6 371 aa14.52□□□□□ -0.08
USP4-203ENST00000415188 ZNF597Q96LX8 424 aa14.52□□□□□ -0.08
USP4-203ENST00000415188 SMIM14Q96QK8 99 aa14.52□□□□□ -0.08
USP4-203ENST00000415188 ZFYVE1Q9HBF4 777 aa14.52□□□□□ -0.08
USP4-203ENST00000415188 KIAA1522Q9P206 1035 aaPredicted RBP14.52□□□□□ -0.08
USP4-203ENST00000415188 EIF2B4Q9UI10 523 aaKnown RBP14.52□□□□□ -0.08
USP4-203ENST00000415188 CNOT6Q9ULM6 557 aaKnown RBP14.52□□□□□ -0.08
USP4-203ENST00000415188 PTGDR2Q9Y5Y4 395 aa14.52□□□□□ -0.08
USP4-203ENST00000415188 MED19A0JLT2 244 aaPredicted RBP14.51□□□□□ -0.09
USP4-203ENST00000415188 SLC22A3O75751 556 aa14.51□□□□□ -0.09
USP4-203ENST00000415188 OTCP00480 354 aa14.51□□□□□ -0.09
USP4-203ENST00000415188 TRBC1P01850 177 aa14.51□□□□□ -0.09
USP4-203ENST00000415188 FCGR1AP12314 374 aa14.51□□□□□ -0.09
USP4-203ENST00000415188 ZNF26P17031 533 aaPredicted RBP14.51□□□□□ -0.09
USP4-203ENST00000415188 SEC13P55735 322 aa14.51□□□□□ -0.09
USP4-203ENST00000415188 EEFSECP57772 596 aaKnown RBP14.51□□□□□ -0.09
USP4-203ENST00000415188 DHCR24Q15392 516 aa14.51□□□□□ -0.09
USP4-203ENST00000415188 ADRM1Q16186 407 aa14.51□□□□□ -0.09
USP4-203ENST00000415188 VPS26BQ4G0F5 336 aa14.51□□□□□ -0.09
USP4-203ENST00000415188 FBXO43Q4G163 708 aa14.51□□□□□ -0.09
USP4-203ENST00000415188 ATP6AP1LQ52LC2 224 aa14.51□□□□□ -0.09
USP4-203ENST00000415188 ATXN7L2Q5T6C5 722 aaPredicted RBP14.51□□□□□ -0.09
USP4-203ENST00000415188 FOXB2Q5VYV0 432 aa14.51□□□□□ -0.09
USP4-203ENST00000415188 GRAMD4Q6IC98 578 aa14.51□□□□□ -0.09
USP4-203ENST00000415188 TTC23LQ6PF05 361 aa14.51□□□□□ -0.09
USP4-203ENST00000415188 SERPINA9Q86WD7 417 aa14.51□□□□□ -0.09
USP4-203ENST00000415188 SFTPA1Q8IWL2 248 aa14.51□□□□□ -0.09
USP4-203ENST00000415188 MYO1HQ8N1T3 1032 aa14.51□□□□□ -0.09
USP4-203ENST00000415188 PHC3Q8NDX5 983 aa14.51□□□□□ -0.09
USP4-203ENST00000415188 ZFAND2BQ8WV99 257 aa14.51□□□□□ -0.09
USP4-203ENST00000415188 SLCO4A1Q96BD0 722 aa14.51□□□□□ -0.09
USP4-203ENST00000415188 SLC45A3Q96JT2 553 aa14.51□□□□□ -0.09
USP4-203ENST00000415188 PLEKHG4BQ96PX9 1271 aa14.51□□□□□ -0.09
USP4-203ENST00000415188 LYSMD1Q96S90 227 aa14.51□□□□□ -0.09
USP4-203ENST00000415188 MRPS26Q9BYN8 205 aaKnown RBP14.51□□□□□ -0.09
USP4-203ENST00000415188 SLC2A11Q9BYW1 496 aa14.51□□□□□ -0.09
USP4-203ENST00000415188 ATP13A3Q9H7F0 1226 aa14.51□□□□□ -0.09
USP4-203ENST00000415188 CCM2LQ9NUG4 571 aaPredicted RBP14.51□□□□□ -0.09
USP4-203ENST00000415188 ZNF225Q9UK10 706 aa14.51□□□□□ -0.09
USP4-203ENST00000415188 OARD1Q9Y530 152 aa14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms