RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 DCLRE1BQ9H816 532 aa13.16□□□□□ -0.3
LIMS1-204ENST00000409441 POPDC3Q9HBV1 291 aa13.16□□□□□ -0.3
LIMS1-204ENST00000409441 CYP4F12Q9HCS2 524 aa13.16□□□□□ -0.3
LIMS1-204ENST00000409441 FGF22Q9HCT0 170 aa13.16□□□□□ -0.3
LIMS1-204ENST00000409441 MRPL40Q9NQ50 206 aaKnown RBP13.16□□□□□ -0.3
LIMS1-204ENST00000409441 INTS10Q9NVR2 710 aaKnown RBP13.16□□□□□ -0.3
LIMS1-204ENST00000409441 NCKIPSDQ9NZQ3 722 aa13.16□□□□□ -0.3
LIMS1-204ENST00000409441 KLQ9UEF7 1012 aa13.16□□□□□ -0.3
LIMS1-204ENST00000409441 ZNHIT2Q9UHR6 403 aa13.16□□□□□ -0.3
LIMS1-204ENST00000409441 SLC6A14Q9UN76 642 aa13.16□□□□□ -0.3
LIMS1-204ENST00000409441 VPS9D1Q9Y2B5 631 aa13.16□□□□□ -0.3
LIMS1-204ENST00000409441 VWA7Q9Y334 891 aa13.16□□□□□ -0.3
LIMS1-204ENST00000409441 FANCMQ8IYD8 2048 aa13.16□□□□□ -0.3
LIMS1-204ENST00000409441 SPAG17Q6Q759 2223 aa13.16□□□□□ -0.3
LIMS1-204ENST00000409441 SLC22A2O15244 555 aa13.15□□□□□ -0.3
LIMS1-204ENST00000409441 MPSTP25325 297 aa13.15□□□□□ -0.3
LIMS1-204ENST00000409441 ADSLP30566 484 aaPredicted RBP13.15□□□□□ -0.3
LIMS1-204ENST00000409441 FMO4P31512 558 aa13.15□□□□□ -0.3
LIMS1-204ENST00000409441 NAGLUP54802 743 aa13.15□□□□□ -0.3
LIMS1-204ENST00000409441 BNC1Q01954 994 aa13.15□□□□□ -0.3
LIMS1-204ENST00000409441 GTF2H3Q13889 308 aa13.15□□□□□ -0.3
LIMS1-204ENST00000409441 ALG11Q2TAA5 492 aa13.15□□□□□ -0.3
LIMS1-204ENST00000409441 ZNF542PQ5EBM4 170 aa13.15□□□□□ -0.3
LIMS1-204ENST00000409441 TRIM61Q5EBN2 209 aa13.15□□□□□ -0.3
LIMS1-204ENST00000409441 ARL13AQ5H913 290 aaPredicted RBP13.15□□□□□ -0.3
LIMS1-204ENST00000409441 PRAMEF14Q5SWL7 426 aa13.15□□□□□ -0.3
LIMS1-204ENST00000409441 SLC23A3Q6PIS1 610 aa13.15□□□□□ -0.3
LIMS1-204ENST00000409441 TMEM220Q6QAJ8 160 aa13.15□□□□□ -0.3
LIMS1-204ENST00000409441 SLC22A9Q8IVM8 553 aa13.15□□□□□ -0.3
LIMS1-204ENST00000409441 OR1E3Q8WZA6 343 aa13.15□□□□□ -0.3
LIMS1-204ENST00000409441 LPGAT1Q92604 370 aa13.15□□□□□ -0.3
LIMS1-204ENST00000409441 SCARF2Q96GP6 870 aaPredicted RBP13.15□□□□□ -0.3
LIMS1-204ENST00000409441 FAR2Q96K12 515 aa13.15□□□□□ -0.3
LIMS1-204ENST00000409441 CNDP1Q96KN2 507 aa13.15□□□□□ -0.3
LIMS1-204ENST00000409441 UBXN10Q96LJ8 280 aa13.15□□□□□ -0.3
LIMS1-204ENST00000409441 CLPBQ9H078 707 aa13.15□□□□□ -0.3
LIMS1-204ENST00000409441 RMI1Q9H9A7 625 aa13.15□□□□□ -0.3
LIMS1-204ENST00000409441 CAPN10Q9HC96 672 aa13.15□□□□□ -0.3
LIMS1-204ENST00000409441 GPAMQ9HCL2 828 aa13.15□□□□□ -0.3
LIMS1-204ENST00000409441 KLF15Q9UIH9 416 aa13.15□□□□□ -0.3
LIMS1-204ENST00000409441 METRNQ9UJH8 293 aa13.15□□□□□ -0.3
LIMS1-204ENST00000409441 PNMA8BQ9ULN7 279 aaPredicted RBP13.15□□□□□ -0.3
LIMS1-204ENST00000409441 SUFUQ9UMX1 484 aa13.15□□□□□ -0.3
LIMS1-204ENST00000409441 L3MBTL1Q9Y468 752 aa13.15□□□□□ -0.3
LIMS1-204ENST00000409441 PRKAB1Q9Y478 270 aa13.15□□□□□ -0.3
LIMS1-204ENST00000409441 SNX11Q9Y5W9 270 aa13.15□□□□□ -0.3
LIMS1-204ENST00000409441 PRSS21Q9Y6M0 314 aa13.15□□□□□ -0.3
LIMS1-204ENST00000409441 UBA6A0AVT1 1052 aaPredicted RBP13.14□□□□□ -0.31
LIMS1-204ENST00000409441 PRSS38A1L453 326 aa13.14□□□□□ -0.31
LIMS1-204ENST00000409441 OR2AG2A6NM03 316 aa13.14□□□□□ -0.31
LIMS1-204ENST00000409441 GPR89AB7ZAQ6 455 aa13.14□□□□□ -0.31
LIMS1-204ENST00000409441 F8W8V4 182 aa13.14□□□□□ -0.31
LIMS1-204ENST00000409441 PRMT5O14744 637 aaPredicted RBP13.14□□□□□ -0.31
LIMS1-204ENST00000409441 GRID2O43424 1007 aa13.14□□□□□ -0.31
LIMS1-204ENST00000409441 ANP32DO95626 131 aa13.14□□□□□ -0.31
LIMS1-204ENST00000409441 CHRNGP07510 517 aa13.14□□□□□ -0.31
LIMS1-204ENST00000409441 GPR89BP0CG08 455 aa13.14□□□□□ -0.31
LIMS1-204ENST00000409441 CTSKP43235 329 aa13.14□□□□□ -0.31
LIMS1-204ENST00000409441 CPA2P48052 419 aa13.14□□□□□ -0.31
LIMS1-204ENST00000409441 CTSCP53634 463 aa13.14□□□□□ -0.31
LIMS1-204ENST00000409441 MXRA7P84157 204 aa13.14□□□□□ -0.31
LIMS1-204ENST00000409441 CSHL1Q14406 222 aa13.14□□□□□ -0.31
LIMS1-204ENST00000409441 PLA2G2CQ5R387 149 aa13.14□□□□□ -0.31
LIMS1-204ENST00000409441 C6orf163Q5TEZ5 329 aa13.14□□□□□ -0.31
LIMS1-204ENST00000409441 ACAD11Q709F0 780 aa13.14□□□□□ -0.31
LIMS1-204ENST00000409441 NET1Q7Z628 596 aaPredicted RBP13.14□□□□□ -0.31
LIMS1-204ENST00000409441 PARGQ86W56 976 aa13.14□□□□□ -0.31
LIMS1-204ENST00000409441 HID1Q8IV36 788 aa13.14□□□□□ -0.31
LIMS1-204ENST00000409441 LSMEM2Q8N112 164 aa13.14□□□□□ -0.31
LIMS1-204ENST00000409441 AFAP1L2Q8N4X5 818 aa13.14□□□□□ -0.31
LIMS1-204ENST00000409441 ZNF514Q96K75 400 aaPredicted RBP13.14□□□□□ -0.31
LIMS1-204ENST00000409441 BIRC8Q96P09 236 aa13.14□□□□□ -0.31
LIMS1-204ENST00000409441 NDNQ99608 321 aa13.14□□□□□ -0.31
LIMS1-204ENST00000409441 P2RY12Q9H244 342 aa13.14□□□□□ -0.31
LIMS1-204ENST00000409441 SMOC1Q9H4F8 434 aa13.14□□□□□ -0.31
LIMS1-204ENST00000409441 ERVMER34-1Q9H9K5 563 aa13.14□□□□□ -0.31
LIMS1-204ENST00000409441 TCF7L2Q9NQB0 619 aa13.14□□□□□ -0.31
LIMS1-204ENST00000409441 FSCN3Q9NQT6 498 aa13.14□□□□□ -0.31
LIMS1-204ENST00000409441 GMEB2Q9UKD1 530 aa13.14□□□□□ -0.31
LIMS1-204ENST00000409441 GPR34Q9UPC5 381 aa13.14□□□□□ -0.31
LIMS1-204ENST00000409441 GPSM3Q9Y4H4 160 aa13.14□□□□□ -0.31
LIMS1-204ENST00000409441 PCYT1BQ9Y5K3 369 aaPredicted RBP13.14□□□□□ -0.31
LIMS1-204ENST00000409441 DGKBQ9Y6T7 804 aa13.14□□□□□ -0.31
LIMS1-204ENST00000409441 BPTFQ12830 3046 aa13.14□□□□□ -0.31
LIMS1-204ENST00000409441 ZNF106Q9H2Y7 1883 aaKnown RBP13.14□□□□□ -0.31
LIMS1-204ENST00000409441 MUC6Q6W4X9 2439 aa13.13□□□□□ -0.31
LIMS1-204ENST00000409441 KHNYNO15037 678 aaKnown RBP13.13□□□□□ -0.31
LIMS1-204ENST00000409441 SCAMP1O15126 338 aa13.13□□□□□ -0.31
LIMS1-204ENST00000409441 SGTAO43765 313 aa13.13□□□□□ -0.31
LIMS1-204ENST00000409441 CIB2O75838 187 aa13.13□□□□□ -0.31
LIMS1-204ENST00000409441 AP2A2O94973 939 aa13.13□□□□□ -0.31
LIMS1-204ENST00000409441 TNFP01375 233 aa13.13□□□□□ -0.31
LIMS1-204ENST00000409441 CCDC166P0CW27 439 aa13.13□□□□□ -0.31
LIMS1-204ENST00000409441 TPBGLP0DKB5 382 aa13.13□□□□□ -0.31
LIMS1-204ENST00000409441 TFEBP19484 476 aa13.13□□□□□ -0.31
LIMS1-204ENST00000409441 FDXRP22570 491 aa13.13□□□□□ -0.31
LIMS1-204ENST00000409441 GNPDA1P46926 289 aa13.13□□□□□ -0.31
LIMS1-204ENST00000409441 HK3P52790 923 aa13.13□□□□□ -0.31
LIMS1-204ENST00000409441 ADARP55265 1226 aaKnown RBP13.13□□□□□ -0.31
LIMS1-204ENST00000409441 GALNT1Q10472 559 aaPredicted RBP13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms