RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 OR2AJ1Q8NGZ0 328 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 ALG3Q92685 438 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 TAMM41Q96BW9 452 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 APOLD1Q96LR9 279 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 P2RX7Q99572 595 aaKnown RBP6□□□□□ -1.45
SCN1A-203ENST00000409050 NPAS2Q99743 824 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 TCF25Q9BQ70 676 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 GTPBP2Q9BX10 602 aaKnown RBP6□□□□□ -1.45
SCN1A-203ENST00000409050 UNKLQ9H9P5 680 aaKnown RBP6□□□□□ -1.45
SCN1A-203ENST00000409050 EBF2Q9HAK2 575 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 ZNF224Q9NZL3 707 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 COPZ2Q9P299 210 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 SLC17A7Q9P2U7 560 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 COPS7AQ9UBW8 275 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 WASF3Q9UPY6 502 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 TELO2Q9Y4R8 837 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 E9PAM4 449 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 MPIP34949 423 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 CCNHP51946 323 aaPredicted RBP6□□□□□ -1.45
SCN1A-203ENST00000409050 GABARAPL2P60520 117 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 NFE2L1Q14494 772 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 INAVAQ3KP66 663 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 PTPN20Q4JDL3 420 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 PGBD2Q6P3X8 592 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 BORAQ6PGQ7 559 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 SPPL2CQ8IUH8 684 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 FITM2Q8N6M3 262 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 C4orf32Q8N8J7 132 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 OR52K2Q8NGK3 314 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 HEPHQ9BQS7 1158 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 GATA5Q9BWX5 397 aaPredicted RBP6□□□□□ -1.45
SCN1A-203ENST00000409050 CD93Q9NPY3 652 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 STXBP5LQ9Y2K9 1186 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 GPSM3Q9Y4H4 160 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 MST1RQ04912 1400 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 DISC1C4P0D8 188 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 ADAMTS3O15072 1205 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 LRCH4O75427 683 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 GLUD1P00367 558 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 ANXA3P12429 323 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 HNRNPLP14866 589 aaKnown RBP eCLIP6□□□□□ -1.452e-7■■■□□ 17.7
SCN1A-203ENST00000409050 OR3A3P47888 321 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 OR3A2P47893 321 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 ZNF155Q12901 538 aaPredicted RBP6□□□□□ -1.45
SCN1A-203ENST00000409050 ILF3Q12906 894 aaKnown RBP eCLIP6□□□□□ -1.45
SCN1A-203ENST00000409050 ZNF181Q2M3W8 571 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 TBC1D25Q3MII6 688 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 PAN2Q504Q3 1202 aaKnown RBP6□□□□□ -1.45
SCN1A-203ENST00000409050 C1orf189Q5VU69 101 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 ASB18Q6ZVZ8 466 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 TMEM139Q8IV31 216 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 GID4Q8IVV7 300 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 OR5T3Q8NGG3 340 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 THAP6Q8TBB0 222 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 C10orf82Q8WW14 230 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 HDAC2Q92769 488 aaKnown RBP6□□□□□ -1.45
SCN1A-203ENST00000409050 FAM136AQ96C01 138 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 CIB1Q99828 191 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 PELOQ9BRX2 385 aaKnown RBP6□□□□□ -1.45
SCN1A-203ENST00000409050 DUSP26Q9BV47 211 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 CADM1Q9BY67 442 aaKnown RBP6□□□□□ -1.45
SCN1A-203ENST00000409050 CEP41Q9BYV8 373 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 UNKQ9C0B0 810 aaKnown RBP6□□□□□ -1.45
SCN1A-203ENST00000409050 TM9SF3Q9HD45 589 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 SLCO1B3Q9NPD5 702 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 OXSMQ9NWU1 459 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 ZNHIT2Q9UHR6 403 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 PCDHGA2Q9Y5H1 932 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 NPEPPSL1A6NEC2 478 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 C2CD4BA6NLJ0 364 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 UBE2Q2LH0YL09 131 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 SLC16A5O15375 505 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 SCN2BO60939 215 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 SCGB2A1O75556 95 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 ENDOD1O94919 500 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 ZBTB11O95625 1053 aaPredicted RBP6□□□□□ -1.45
SCN1A-203ENST00000409050 PENKP01210 267 aaPredicted RBP6□□□□□ -1.45
SCN1A-203ENST00000409050 VIPP01282 170 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 ALPPL2P10696 532 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 RPL10P27635 214 aaKnown RBP6□□□□□ -1.45
SCN1A-203ENST00000409050 HOXC12P31275 282 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 RORAP35398 523 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 TPTEP56180 551 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 TAS2R50P59544 299 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 POU4F2Q12837 409 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 DSG2Q14126 1118 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 DOK6Q6PKX4 331 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 ZNF783Q6ZMS7 281 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 C3P1Q6ZMU1 363 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 FRRS1Q6ZNA5 592 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 ZNF367Q7RTV3 350 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 TMCO2Q7Z6W1 182 aaPredicted RBP6□□□□□ -1.45
SCN1A-203ENST00000409050 HPS6Q86YV9 775 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 COL26A1Q96A83 441 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 LENG8Q96PV6 779 aaPredicted RBP6□□□□□ -1.45
SCN1A-203ENST00000409050 KCNS3Q9BQ31 491 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 CCM2Q9BSQ5 444 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 TTYH3Q9C0H2 523 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 POLR2J3Q9H1A7 115 aaKnown RBP6□□□□□ -1.45
SCN1A-203ENST00000409050 RANBP3Q9H6Z4 567 aaPredicted RBP6□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms