RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 DNAJB9Q9UBS3 223 aa20.59■□□□□ 0.89
CTCF-202ENST00000401394 DOCK4Q8N1I0 1966 aa20.59■□□□□ 0.89
CTCF-202ENST00000401394 PRRC2BQ5JSZ5 2229 aaKnown RBP20.59■□□□□ 0.89
CTCF-202ENST00000401394 ZNF682O95780 498 aa20.58■□□□□ 0.89
CTCF-202ENST00000401394 ANGPTL1O95841 491 aa20.58■□□□□ 0.89
CTCF-202ENST00000401394 FGF1P05230 155 aa20.58■□□□□ 0.89
CTCF-202ENST00000401394 CTPS1P17812 591 aa20.58■□□□□ 0.89
CTCF-202ENST00000401394 SLC6A4P31645 630 aa20.58■□□□□ 0.89
CTCF-202ENST00000401394 IL2P60568 153 aa20.58■□□□□ 0.89
CTCF-202ENST00000401394 PCBP1Q15365 356 aaKnown RBP eCLIP20.58■□□□□ 0.89
CTCF-202ENST00000401394 KCNJ8Q15842 424 aa20.58■□□□□ 0.89
CTCF-202ENST00000401394 MAPKAPK3Q16644 382 aa20.58■□□□□ 0.89
CTCF-202ENST00000401394 RBM48Q5RL73 367 aaKnown RBP20.58■□□□□ 0.89
CTCF-202ENST00000401394 BTBD2Q9BX70 525 aa20.58■□□□□ 0.89
CTCF-202ENST00000401394 YTHDF1Q9BYJ9 559 aaKnown RBP20.58■□□□□ 0.89
CTCF-202ENST00000401394 HACD3Q9P035 362 aa20.58■□□□□ 0.89
CTCF-202ENST00000401394 UNCXA6NJT0 531 aa20.58■□□□□ 0.89
CTCF-202ENST00000401394 MYO1DO94832 1006 aa20.58■□□□□ 0.89
CTCF-202ENST00000401394 MT-ND2P03891 347 aa20.58■□□□□ 0.89
CTCF-202ENST00000401394 NEK2P51955 445 aa20.58■□□□□ 0.89
CTCF-202ENST00000401394 TTC23Q5W5X9 447 aa20.58■□□□□ 0.89
CTCF-202ENST00000401394 CHPFQ8IZ52 775 aa20.58■□□□□ 0.89
CTCF-202ENST00000401394 ADAM2Q99965 735 aa20.58■□□□□ 0.89
CTCF-202ENST00000401394 MARCH2Q9P0N8 246 aa20.58■□□□□ 0.89
CTCF-202ENST00000401394 HCSTQ9UBK5 93 aa20.58■□□□□ 0.89
CTCF-202ENST00000401394 FAM32AQ9Y421 112 aaKnown RBP20.58■□□□□ 0.89
CTCF-202ENST00000401394 PCDHGA10Q9Y5H3 936 aa20.58■□□□□ 0.89
CTCF-202ENST00000401394 KPNA4O00629 521 aaPredicted RBP20.58■□□□□ 0.88
CTCF-202ENST00000401394 BCKDKO14874 412 aa20.58■□□□□ 0.88
CTCF-202ENST00000401394 VPS4BO75351 444 aa20.58■□□□□ 0.88
CTCF-202ENST00000401394 PBX3P40426 434 aa20.58■□□□□ 0.88
CTCF-202ENST00000401394 RPS3AP61247 264 aaKnown RBP20.58■□□□□ 0.88
CTCF-202ENST00000401394 TAF10Q12962 218 aa20.58■□□□□ 0.88
CTCF-202ENST00000401394 PHKG1Q16816 387 aa20.58■□□□□ 0.88
CTCF-202ENST00000401394 DPP10Q8N608 796 aa20.58■□□□□ 0.88
CTCF-202ENST00000401394 EID2BQ96D98 161 aa20.58■□□□□ 0.88
CTCF-202ENST00000401394 KIAA1522Q9P206 1035 aaPredicted RBP20.58■□□□□ 0.88
CTCF-202ENST00000401394 INTS6Q9UL03 887 aaKnown RBP20.58■□□□□ 0.88
CTCF-202ENST00000401394 AGO1Q9UL18 857 aaKnown RBP20.58■□□□□ 0.88
CTCF-202ENST00000401394 ZNF451Q9Y4E5 1061 aa20.58■□□□□ 0.88
CTCF-202ENST00000401394 GMNNO75496 209 aa20.57■□□□□ 0.88
CTCF-202ENST00000401394 TGM1P22735 817 aa20.57■□□□□ 0.88
CTCF-202ENST00000401394 PURAQ00577 322 aaKnown RBP20.57■□□□□ 0.88
CTCF-202ENST00000401394 GTF2H2Q13888 395 aa20.57■□□□□ 0.88
CTCF-202ENST00000401394 SF3B4Q15427 424 aaKnown RBP eCLIP20.57■□□□□ 0.88
CTCF-202ENST00000401394 GTF2H2CQ6P1K8 395 aa20.57■□□□□ 0.88
CTCF-202ENST00000401394 BEND5Q7L4P6 421 aa20.57■□□□□ 0.88
CTCF-202ENST00000401394 VTCN1Q7Z7D3 282 aa20.57■□□□□ 0.88
CTCF-202ENST00000401394 ZCCHC7Q8N3Z6 543 aaKnown RBP20.57■□□□□ 0.88
CTCF-202ENST00000401394 GIPC2Q8TF65 315 aa20.57■□□□□ 0.88
CTCF-202ENST00000401394 EGLN2Q96KS0 407 aa20.57■□□□□ 0.88
CTCF-202ENST00000401394 C1orf74Q96LT6 269 aa20.57■□□□□ 0.88
CTCF-202ENST00000401394 NLE1Q9NVX2 485 aaPredicted RBP20.57■□□□□ 0.88
CTCF-202ENST00000401394 PKP3Q9Y446 797 aa20.57■□□□□ 0.88
CTCF-202ENST00000401394 ELOVL7A1L3X0 281 aa20.57■□□□□ 0.88
CTCF-202ENST00000401394 WASH4PA8MWX3 477 aa20.57■□□□□ 0.88
CTCF-202ENST00000401394 HLA-DPA1P20036 260 aa20.57■□□□□ 0.88
CTCF-202ENST00000401394 HOXD9P28356 352 aaPredicted RBP20.57■□□□□ 0.88
CTCF-202ENST00000401394 THPOP40225 353 aa20.57■□□□□ 0.88
CTCF-202ENST00000401394 IL10RBQ08334 325 aa20.57■□□□□ 0.88
CTCF-202ENST00000401394 ZNF846Q147U1 533 aa20.57■□□□□ 0.88
CTCF-202ENST00000401394 ZNF691Q5VV52 312 aa20.57■□□□□ 0.88
CTCF-202ENST00000401394 FRA10AC1Q70Z53 315 aa20.57■□□□□ 0.88
CTCF-202ENST00000401394 C16orf59Q7L2K0 433 aa20.57■□□□□ 0.88
CTCF-202ENST00000401394 MAGED4Q96JG8 741 aa20.57■□□□□ 0.88
CTCF-202ENST00000401394 WDR70Q9NW82 654 aa20.57■□□□□ 0.88
CTCF-202ENST00000401394 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP20.57■□□□□ 0.88
CTCF-202ENST00000401394 CBX4O00257 560 aa20.56■□□□□ 0.88
CTCF-202ENST00000401394 PRAMEF11O60813 436 aa20.56■□□□□ 0.88
CTCF-202ENST00000401394 CNOT3O75175 753 aaKnown RBP20.56■□□□□ 0.88
CTCF-202ENST00000401394 TULP3O75386 442 aa20.56■□□□□ 0.88
CTCF-202ENST00000401394 NDST3O95803 873 aa20.56■□□□□ 0.88
CTCF-202ENST00000401394 ALPIP09923 528 aa20.56■□□□□ 0.88
CTCF-202ENST00000401394 SPNP16150 400 aa20.56■□□□□ 0.88
CTCF-202ENST00000401394 TACR1P25103 407 aa20.56■□□□□ 0.88
CTCF-202ENST00000401394 NR4A2P43354 598 aa20.56■□□□□ 0.88
CTCF-202ENST00000401394 CLK3P49761 638 aaKnown RBP20.56■□□□□ 0.88
CTCF-202ENST00000401394 ZXDBP98169 803 aa20.56■□□□□ 0.88
CTCF-202ENST00000401394 SF1Q15637 639 aaKnown RBP20.56■□□□□ 0.88
CTCF-202ENST00000401394 MAPRE1Q15691 268 aaKnown RBP20.56■□□□□ 0.88
CTCF-202ENST00000401394 PRSS36Q5K4E3 855 aa20.56■□□□□ 0.88
CTCF-202ENST00000401394 ADCK1Q86TW2 530 aa20.56■□□□□ 0.88
CTCF-202ENST00000401394 THEM5Q8N1Q8 247 aa20.56■□□□□ 0.88
CTCF-202ENST00000401394 ZBTB20Q9HC78 741 aaPredicted RBP20.56■□□□□ 0.88
CTCF-202ENST00000401394 SCHIP1Q9P0W5 487 aaPredicted RBP20.56■□□□□ 0.88
CTCF-202ENST00000401394 WDR37Q9Y2I8 494 aa20.56■□□□□ 0.88
CTCF-202ENST00000401394 PATJQ8NI35 1801 aa20.56■□□□□ 0.88
CTCF-202ENST00000401394 NBNO60934 754 aa20.56■□□□□ 0.88
CTCF-202ENST00000401394 VPS26AO75436 327 aa20.56■□□□□ 0.88
CTCF-202ENST00000401394 CREG1O75629 220 aa20.56■□□□□ 0.88
CTCF-202ENST00000401394 SELENBP1Q13228 472 aa20.56■□□□□ 0.88
CTCF-202ENST00000401394 TUBA3CQ13748 450 aa20.56■□□□□ 0.88
CTCF-202ENST00000401394 ZNF467Q7Z7K2 595 aaPredicted RBP20.56■□□□□ 0.88
CTCF-202ENST00000401394 MON1AQ86VX9 555 aa20.56■□□□□ 0.88
CTCF-202ENST00000401394 ANKRD13BQ86YJ7 626 aa20.56■□□□□ 0.88
CTCF-202ENST00000401394 ARL10Q8N8L6 244 aa20.56■□□□□ 0.88
CTCF-202ENST00000401394 MUC13Q9H3R2 512 aa20.56■□□□□ 0.88
CTCF-202ENST00000401394 ZNF229Q9UJW7 825 aa20.56■□□□□ 0.88
CTCF-202ENST00000401394 GIT1Q9Y2X7 761 aa20.56■□□□□ 0.88
CTCF-202ENST00000401394 DNAH14Q0VDD8 3507 aa20.56■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms