RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 SHKBP1Q8TBC3 707 aa18.18■□□□□ 0.5
USP48-204ENST00000400301 UBE2E3Q969T4 207 aa18.18■□□□□ 0.5
USP48-204ENST00000400301 ATG13O75143 517 aa18.17■□□□□ 0.5
USP48-204ENST00000400301 SLC6A2P23975 617 aa18.17■□□□□ 0.5
USP48-204ENST00000400301 HNF4AP41235 474 aa18.17■□□□□ 0.5
USP48-204ENST00000400301 INHBCP55103 352 aa18.17■□□□□ 0.5
USP48-204ENST00000400301 SPIBQ01892 262 aa18.17■□□□□ 0.5
USP48-204ENST00000400301 PPP4R4Q6NUP7 873 aa18.17■□□□□ 0.5
USP48-204ENST00000400301 FEM1AQ9BSK4 669 aa18.17■□□□□ 0.5
USP48-204ENST00000400301 H2AFY2Q9P0M6 372 aaPredicted RBP18.17■□□□□ 0.5
USP48-204ENST00000400301 ENOPH1Q9UHY7 261 aa18.17■□□□□ 0.5
USP48-204ENST00000400301 FOCADQ5VW36 1801 aa18.17■□□□□ 0.5
USP48-204ENST00000400301 NADKO95544 446 aaPredicted RBP18.17■□□□□ 0.5
USP48-204ENST00000400301 ARRB2P32121 409 aa18.17■□□□□ 0.5
USP48-204ENST00000400301 LAPTM5Q13571 262 aa18.17■□□□□ 0.5
USP48-204ENST00000400301 KANK2Q63ZY3 851 aa18.17■□□□□ 0.5
USP48-204ENST00000400301 CAPN13Q6MZZ7 669 aaPredicted RBP18.17■□□□□ 0.5
USP48-204ENST00000400301 LARP4Q71RC2 724 aaKnown RBP eCLIP18.17■□□□□ 0.53e-6■■■■□ 21.8
USP48-204ENST00000400301 OR10Q1Q8NGQ4 319 aa18.17■□□□□ 0.5
USP48-204ENST00000400301 PPCDCQ96CD2 204 aa18.17■□□□□ 0.5
USP48-204ENST00000400301 ZNF696Q9H7X3 374 aa18.17■□□□□ 0.5
USP48-204ENST00000400301 DOCK1Q14185 1865 aa18.17■□□□□ 0.5
USP48-204ENST00000400301 A0A1W2PQ67 120 aa18.17■□□□□ 0.5
USP48-204ENST00000400301 TBC1D3BA6NDS4 549 aa18.17■□□□□ 0.5
USP48-204ENST00000400301 UGT2B11O75310 529 aa18.17■□□□□ 0.5
USP48-204ENST00000400301 CES4AQ5XG92 561 aa18.17■□□□□ 0.5
USP48-204ENST00000400301 SUSD6Q92537 303 aa18.17■□□□□ 0.5
USP48-204ENST00000400301 SLC39A13Q96H72 371 aa18.17■□□□□ 0.5
USP48-204ENST00000400301 SLC29A1Q99808 456 aa18.17■□□□□ 0.5
USP48-204ENST00000400301 MGME1Q9BQP7 344 aa18.17■□□□□ 0.5
USP48-204ENST00000400301 SLC22A14Q9Y267 594 aa18.17■□□□□ 0.5
USP48-204ENST00000400301 KIF13BQ9NQT8 1826 aa18.17■□□□□ 0.5
USP48-204ENST00000400301 LOC285095A0A1B0GVY8 99 aa18.17■□□□□ 0.5
USP48-204ENST00000400301 MAGEB17A8MXT2 336 aa18.17■□□□□ 0.5
USP48-204ENST00000400301 MANBAO00462 879 aa18.17■□□□□ 0.5
USP48-204ENST00000400301 FABP3P05413 133 aa18.17■□□□□ 0.5
USP48-204ENST00000400301 KRT8P05787 483 aa18.17■□□□□ 0.5
USP48-204ENST00000400301 FGF4P08620 206 aa18.17■□□□□ 0.5
USP48-204ENST00000400301 TUBA4AP68366 448 aa18.17■□□□□ 0.5
USP48-204ENST00000400301 LRP8Q14114 963 aa18.17■□□□□ 0.5
USP48-204ENST00000400301 TRIM40Q6P9F5 258 aa18.17■□□□□ 0.5
USP48-204ENST00000400301 PIANPQ8IYJ0 282 aa18.17■□□□□ 0.5
USP48-204ENST00000400301 PHF10Q8WUB8 498 aaKnown RBP18.17■□□□□ 0.5
USP48-204ENST00000400301 HTATIP2Q9BUP3 242 aa18.17■□□□□ 0.5
USP48-204ENST00000400301 SDR39U1Q9NRG7 319 aaPredicted RBP18.17■□□□□ 0.5
USP48-204ENST00000400301 RAB23Q9ULC3 237 aa18.17■□□□□ 0.5
USP48-204ENST00000400301 C2orf78A6NCI8 922 aa18.16■□□□□ 0.5
USP48-204ENST00000400301 SEC24AO95486 1093 aa18.16■□□□□ 0.5
USP48-204ENST00000400301 ASMTP46597 345 aa18.16■□□□□ 0.5
USP48-204ENST00000400301 DEPDC1Q5TB30 811 aa18.16■□□□□ 0.5
USP48-204ENST00000400301 PLPP4Q5VZY2 271 aa18.16■□□□□ 0.5
USP48-204ENST00000400301 SERPINA13PQ6UXR4 307 aa18.16■□□□□ 0.5
USP48-204ENST00000400301 CASP12Q6UXS9 341 aa18.16■□□□□ 0.5
USP48-204ENST00000400301 PRR23BQ6ZRT6 265 aa18.16■□□□□ 0.5
USP48-204ENST00000400301 KIAA2013Q8IYS2 634 aa18.16■□□□□ 0.5
USP48-204ENST00000400301 KRT78Q8N1N4 520 aa18.16■□□□□ 0.5
USP48-204ENST00000400301 ZHX1-C8orf76Q96EF9 292 aa18.16■□□□□ 0.5
USP48-204ENST00000400301 SMIM14Q96QK8 99 aa18.16■□□□□ 0.5
USP48-204ENST00000400301 PCTPQ9UKL6 214 aa18.16■□□□□ 0.5
USP48-204ENST00000400301 DOCK5Q9H7D0 1870 aa18.16■□□□□ 0.5
USP48-204ENST00000400301 SOCS2O14508 198 aa18.16■□□□□ 0.5
USP48-204ENST00000400301 PGLSO95336 258 aa18.16■□□□□ 0.5
USP48-204ENST00000400301 FADS2O95864 444 aaKnown RBP18.16■□□□□ 0.5
USP48-204ENST00000400301 NFATC2Q13469 925 aa18.16■□□□□ 0.5
USP48-204ENST00000400301 R3HCC1LQ7Z5L2 792 aaKnown RBP18.16■□□□□ 0.5
USP48-204ENST00000400301 ZFP28Q8NHY6 868 aa18.16■□□□□ 0.5
USP48-204ENST00000400301 CD244Q9BZW8 370 aa18.16■□□□□ 0.5
USP48-204ENST00000400301 EPB41L1Q9H4G0 881 aa18.16■□□□□ 0.5
USP48-204ENST00000400301 SCN1AP35498 2009 aa18.16■□□□□ 0.5
USP48-204ENST00000400301 SIPA1L1O43166 1804 aa18.16■□□□□ 0.5
USP48-204ENST00000400301 SNAP29O95721 258 aa18.16■□□□□ 0.5
USP48-204ENST00000400301 MRPS15P82914 257 aaKnown RBP18.16■□□□□ 0.5
USP48-204ENST00000400301 PHKG1Q16816 387 aa18.16■□□□□ 0.5
USP48-204ENST00000400301 ZNF697Q5TEC3 545 aa18.16■□□□□ 0.5
USP48-204ENST00000400301 UBXN10Q96LJ8 280 aa18.16■□□□□ 0.5
USP48-204ENST00000400301 HEPHQ9BQS7 1158 aa18.16■□□□□ 0.5
USP48-204ENST00000400301 CCNB1IP1Q9NPC3 277 aa18.16■□□□□ 0.5
USP48-204ENST00000400301 K7ERQ8 282 aa18.15■□□□□ 0.5
USP48-204ENST00000400301 DFNA5O60443 496 aa18.15■□□□□ 0.5
USP48-204ENST00000400301 AOC2O75106 756 aa18.15■□□□□ 0.5
USP48-204ENST00000400301 PENKP01210 267 aaPredicted RBP18.15■□□□□ 0.5
USP48-204ENST00000400301 SLC10A3P09131 477 aa18.15■□□□□ 0.5
USP48-204ENST00000400301 GPX3P22352 226 aa18.15■□□□□ 0.5
USP48-204ENST00000400301 RPL3P39023 403 aaKnown RBP18.15■□□□□ 0.5
USP48-204ENST00000400301 HTR6P50406 440 aa18.15■□□□□ 0.5
USP48-204ENST00000400301 CYP4F2P78329 520 aa18.15■□□□□ 0.5
USP48-204ENST00000400301 CDKL1Q00532 357 aa18.15■□□□□ 0.5
USP48-204ENST00000400301 PTCHD3Q3KNS1 767 aa18.15■□□□□ 0.5
USP48-204ENST00000400301 LRRC66Q68CR7 880 aa18.15■□□□□ 0.5
USP48-204ENST00000400301 OR4F3Q6IEY1 312 aa18.15■□□□□ 0.5
USP48-204ENST00000400301 GALNT18Q6P9A2 607 aa18.15■□□□□ 0.5
USP48-204ENST00000400301 UGT2A3Q6UWM9 527 aa18.15■□□□□ 0.5
USP48-204ENST00000400301 TPRG1Q6ZUI0 275 aa18.15■□□□□ 0.5
USP48-204ENST00000400301 C2orf73Q8N5S3 287 aaPredicted RBP18.15■□□□□ 0.5
USP48-204ENST00000400301 OR5K1Q8NHB7 308 aa18.15■□□□□ 0.5
USP48-204ENST00000400301 SH3RF2Q8TEC5 729 aa18.15■□□□□ 0.5
USP48-204ENST00000400301 LRCH3Q96II8 777 aa18.15■□□□□ 0.5
USP48-204ENST00000400301 VPS35Q96QK1 796 aa18.15■□□□□ 0.5
USP48-204ENST00000400301 MAGEE1Q9HCI5 957 aa18.15■□□□□ 0.5
USP48-204ENST00000400301 RIMS3Q9UJD0 308 aa18.15■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms