RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 PCDHGB7Q9Y5F8 929 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 PCDHGA6Q9Y5G7 932 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 CEMIPQ8WUJ3 1361 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 CACNA1GO43497 2377 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 PXDNLA1KZ92 1463 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 DISP2A7MBM2 1401 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 TEX13CA0A0J9YWL9 993 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 BBIP1A8MTZ0 92 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 FAM227AF5H4B4 570 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 PLK4O00444 970 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 CCL22O00626 93 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 AHSA1O95433 338 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 PGRP06401 933 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 SRCP12931 536 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 PCSK2P16519 638 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 SDC2P34741 201 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 SCNN1AP37088 669 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 PTGER3P43115 390 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 YAP1P46937 504 aaKnown RBP7.08□□□□□ -1.28
UPF2-203ENST00000397053 GABRB2P47870 512 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 POLR2JP52435 117 aaKnown RBP7.08□□□□□ -1.28
UPF2-203ENST00000397053 HNRNPDQ14103 355 aaKnown RBP7.08□□□□□ -1.28
UPF2-203ENST00000397053 PDK4Q16654 411 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 TNFAIP8L2Q6P589 184 aaPredicted RBP7.08□□□□□ -1.28
UPF2-203ENST00000397053 TAS1R3Q7RTX0 852 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 TMPRSS9Q7Z410 1059 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 GALNT5Q7Z7M9 940 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 NUDT13Q86X67 352 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 GHDCQ8N2G8 530 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 MCFD2Q8NI22 146 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 STK32AQ8WU08 396 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 NAT14Q8WUY8 206 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 NDRG1Q92597 394 aaKnown RBP7.08□□□□□ -1.28
UPF2-203ENST00000397053 MGME1Q9BQP7 344 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 FUT8Q9BYC5 575 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 B3GNT4Q9C0J1 378 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 MRM3Q9HC36 420 aaKnown RBP7.08□□□□□ -1.28
UPF2-203ENST00000397053 SNX7Q9UNH6 387 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 TNS2Q63HR2 1409 aa7.07□□□□□ -1.28
UPF2-203ENST00000397053 LOC102724159A0A0B4J2E5 919 aa7.07□□□□□ -1.28
UPF2-203ENST00000397053 ERI3O43414 337 aaKnown RBP7.07□□□□□ -1.28
UPF2-203ENST00000397053 TBX1O43435 398 aa7.07□□□□□ -1.28
UPF2-203ENST00000397053 UGT2B11O75310 529 aa7.07□□□□□ -1.28
UPF2-203ENST00000397053 ALPPP05187 535 aa7.07□□□□□ -1.28
UPF2-203ENST00000397053 FAM153BP0C7A2 387 aa7.07□□□□□ -1.28
UPF2-203ENST00000397053 GJA1P17302 382 aa7.07□□□□□ -1.28
UPF2-203ENST00000397053 CCNCP24863 283 aa7.07□□□□□ -1.28
UPF2-203ENST00000397053 L1CAMP32004 1257 aa7.07□□□□□ -1.28
UPF2-203ENST00000397053 SLC1A2P43004 574 aa7.07□□□□□ -1.28
UPF2-203ENST00000397053 APLP1P51693 650 aa7.07□□□□□ -1.28
UPF2-203ENST00000397053 LILRA4P59901 499 aa7.07□□□□□ -1.28
UPF2-203ENST00000397053 FMO1Q01740 532 aa7.07□□□□□ -1.28
UPF2-203ENST00000397053 SEMG2Q02383 582 aa7.07□□□□□ -1.28
UPF2-203ENST00000397053 MLC1Q15049 377 aa7.07□□□□□ -1.28
UPF2-203ENST00000397053 PWP2Q15269 919 aaKnown RBP7.07□□□□□ -1.28
UPF2-203ENST00000397053 FBXO48Q5FWF7 155 aa7.07□□□□□ -1.28
UPF2-203ENST00000397053 SPIN3Q5JUX0 258 aa7.07□□□□□ -1.28
UPF2-203ENST00000397053 AADACL2Q6P093 401 aa7.07□□□□□ -1.28
UPF2-203ENST00000397053 LRRTM4Q86VH4 590 aa7.07□□□□□ -1.28
UPF2-203ENST00000397053 RALGPS2Q86X27 583 aaPredicted RBP7.07□□□□□ -1.28
UPF2-203ENST00000397053 C10orf107Q8IVU9 208 aa7.07□□□□□ -1.28
UPF2-203ENST00000397053 CPNE9Q8IYJ1 553 aa7.07□□□□□ -1.28
UPF2-203ENST00000397053 NAXEQ8NCW5 288 aa7.07□□□□□ -1.28
UPF2-203ENST00000397053 AUTS2Q8WXX7 1259 aa7.07□□□□□ -1.28
UPF2-203ENST00000397053 ARMC5Q96C12 935 aa7.07□□□□□ -1.28
UPF2-203ENST00000397053 PCED1BQ96HM7 432 aa7.07□□□□□ -1.28
UPF2-203ENST00000397053 DIRAS2Q96HU8 199 aa7.07□□□□□ -1.28
UPF2-203ENST00000397053 FUBP3Q96I24 572 aaKnown RBP eCLIP7.07□□□□□ -1.28
UPF2-203ENST00000397053 EBPLQ9BY08 206 aa7.07□□□□□ -1.28
UPF2-203ENST00000397053 TTYH1Q9H313 450 aaPredicted RBP7.07□□□□□ -1.28
UPF2-203ENST00000397053 ANKZF1Q9H8Y5 726 aa7.07□□□□□ -1.28
UPF2-203ENST00000397053 RC3H2Q9HBD1 1191 aaKnown RBP7.07□□□□□ -1.28
UPF2-203ENST00000397053 TRPV5Q9NQA5 729 aa7.07□□□□□ -1.28
UPF2-203ENST00000397053 NUP50Q9UKX7 468 aa7.07□□□□□ -1.28
UPF2-203ENST00000397053 HEMK1Q9Y5R4 338 aaPredicted RBP7.07□□□□□ -1.28
UPF2-203ENST00000397053 PTPRUQ92729 1446 aa7.07□□□□□ -1.28
UPF2-203ENST00000397053 NPIPA5E9PKD4 350 aa7.07□□□□□ -1.28
UPF2-203ENST00000397053 ARVCFO00192 962 aa7.07□□□□□ -1.28
UPF2-203ENST00000397053 CDC7O00311 574 aa7.07□□□□□ -1.28
UPF2-203ENST00000397053 PSMG1O95456 288 aa7.07□□□□□ -1.28
UPF2-203ENST00000397053 COL6A2P12110 1019 aa7.07□□□□□ -1.28
UPF2-203ENST00000397053 CYP3A5P20815 502 aa7.07□□□□□ -1.28
UPF2-203ENST00000397053 EFNA1P20827 205 aaPredicted RBP7.07□□□□□ -1.28
UPF2-203ENST00000397053 CCR8P51685 355 aa7.07□□□□□ -1.28
UPF2-203ENST00000397053 NCBP2P52298 156 aaKnown RBP eCLIP7.07□□□□□ -1.285e-9■■■■□ 25.3
UPF2-203ENST00000397053 CDH12P55289 794 aa7.07□□□□□ -1.28
UPF2-203ENST00000397053 DCTN2Q13561 401 aaKnown RBP7.07□□□□□ -1.28
UPF2-203ENST00000397053 CDK10Q15131 360 aa7.07□□□□□ -1.28
UPF2-203ENST00000397053 FAM214AQ32MH5 1076 aa7.07□□□□□ -1.28
UPF2-203ENST00000397053 EARS2Q5JPH6 523 aaKnown RBP7.07□□□□□ -1.28
UPF2-203ENST00000397053 UTS2BQ765I0 119 aa7.07□□□□□ -1.28
UPF2-203ENST00000397053 ZBTB46Q86UZ6 589 aa7.07□□□□□ -1.28
UPF2-203ENST00000397053 SDR16C5Q8N3Y7 309 aa7.07□□□□□ -1.28
UPF2-203ENST00000397053 CERS5Q8N5B7 392 aa7.07□□□□□ -1.28
UPF2-203ENST00000397053 ZNF366Q8N895 744 aa7.07□□□□□ -1.28
UPF2-203ENST00000397053 GIPC3Q8TF64 312 aa7.07□□□□□ -1.28
UPF2-203ENST00000397053 MTERF1Q99551 399 aaKnown RBP7.07□□□□□ -1.28
UPF2-203ENST00000397053 SUV39H2Q9H5I1 410 aa7.07□□□□□ -1.28
UPF2-203ENST00000397053 NPIPA1Q9UND3 350 aa7.07□□□□□ -1.28
UPF2-203ENST00000397053 PLCL2Q9UPR0 1127 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms