RNA–Protein interactions for RNA: ENST00000370573.8

MCF2-202, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-202ENST00000370573 NPC1O15118 1278 aa3.53□□□□□ -1.84
MCF2-202ENST00000370573 PGLSO95336 258 aa3.53□□□□□ -1.84
MCF2-202ENST00000370573 NDST3O95803 873 aa3.53□□□□□ -1.84
MCF2-202ENST00000370573 IGSF6O95976 241 aa3.53□□□□□ -1.84
MCF2-202ENST00000370573 EGFP01133 1207 aa3.53□□□□□ -1.84
MCF2-202ENST00000370573 APODP05090 189 aa3.53□□□□□ -1.84
MCF2-202ENST00000370573 NUDT17P0C025 328 aa3.53□□□□□ -1.84
MCF2-202ENST00000370573 HNRNPLP14866 589 aaKnown RBP eCLIP3.53□□□□□ -1.84
MCF2-202ENST00000370573 ADRA1DP25100 572 aa3.53□□□□□ -1.84
MCF2-202ENST00000370573 NMBRP28336 390 aa3.53□□□□□ -1.84
MCF2-202ENST00000370573 GCAP28676 217 aa3.53□□□□□ -1.84
MCF2-202ENST00000370573 IL12RB1P42701 662 aa3.53□□□□□ -1.84
MCF2-202ENST00000370573 WASP42768 502 aa3.53□□□□□ -1.84
MCF2-202ENST00000370573 TNFRSF4P43489 277 aa3.53□□□□□ -1.84
MCF2-202ENST00000370573 METAP1P53582 386 aa3.53□□□□□ -1.84
MCF2-202ENST00000370573 SNRPD1P62314 119 aaKnown RBP3.53□□□□□ -1.84
MCF2-202ENST00000370573 ZNF844Q08AG5 666 aa3.53□□□□□ -1.84
MCF2-202ENST00000370573 TDGQ13569 410 aa3.53□□□□□ -1.84
MCF2-202ENST00000370573 PTPRCAPQ14761 206 aa3.53□□□□□ -1.84
MCF2-202ENST00000370573 POU6F1Q14863 301 aa3.53□□□□□ -1.84
MCF2-202ENST00000370573 EFTUD2Q15029 972 aaKnown RBP eCLIP3.53□□□□□ -1.84
MCF2-202ENST00000370573 PON2Q15165 354 aa3.53□□□□□ -1.84
MCF2-202ENST00000370573 CDKN3Q16667 212 aa3.53□□□□□ -1.84
MCF2-202ENST00000370573 HNRNPA1L2Q32P51 320 aaKnown RBP3.53□□□□□ -1.84
MCF2-202ENST00000370573 ANKRD20A4Q4UJ75 823 aa3.53□□□□□ -1.84
MCF2-202ENST00000370573 CCDC157Q569K6 752 aa3.53□□□□□ -1.84
MCF2-202ENST00000370573 PCID2Q5JVF3 399 aa3.53□□□□□ -1.84
MCF2-202ENST00000370573 C9orf64Q5T6V5 341 aa3.53□□□□□ -1.84
MCF2-202ENST00000370573 ALS2CLQ60I27 953 aa3.53□□□□□ -1.84
MCF2-202ENST00000370573 TRMT10BQ6PF06 316 aaKnown RBP3.53□□□□□ -1.84
MCF2-202ENST00000370573 C3orf62Q6ZUJ4 267 aa3.53□□□□□ -1.84
MCF2-202ENST00000370573 KANSL1Q7Z3B3 1105 aa3.53□□□□□ -1.84
MCF2-202ENST00000370573 PNPLA5Q7Z6Z6 429 aaPredicted RBP3.53□□□□□ -1.84
MCF2-202ENST00000370573 TMEM135Q86UB9 458 aa3.53□□□□□ -1.84
MCF2-202ENST00000370573 PALM2Q8IXS6 379 aa3.53□□□□□ -1.84
MCF2-202ENST00000370573 OR8H2Q8N162 312 aa3.53□□□□□ -1.84
MCF2-202ENST00000370573 STK40Q8N2I9 435 aa3.53□□□□□ -1.84
MCF2-202ENST00000370573 LINC01356Q8N9X3 169 aa3.53□□□□□ -1.84
MCF2-202ENST00000370573 KDM1BQ8NB78 822 aa3.53□□□□□ -1.84
MCF2-202ENST00000370573 LPCAT1Q8NF37 534 aa3.53□□□□□ -1.84
MCF2-202ENST00000370573 MDGA1Q8NFP4 955 aa3.53□□□□□ -1.84
MCF2-202ENST00000370573 EID2BQ96D98 161 aa3.53□□□□□ -1.84
MCF2-202ENST00000370573 LRRC39Q96DD0 335 aa3.53□□□□□ -1.84
MCF2-202ENST00000370573 ERLEC1Q96DZ1 483 aa3.53□□□□□ -1.84
MCF2-202ENST00000370573 STAMBPL1Q96FJ0 436 aa3.53□□□□□ -1.84
MCF2-202ENST00000370573 HEPHQ9BQS7 1158 aa3.53□□□□□ -1.84
MCF2-202ENST00000370573 KIFC1Q9BW19 673 aa3.53□□□□□ -1.84
MCF2-202ENST00000370573 FSD1LQ9BXM9 530 aa3.53□□□□□ -1.84
MCF2-202ENST00000370573 VIPAS39Q9H9C1 493 aa3.53□□□□□ -1.84
MCF2-202ENST00000370573 VPS37BQ9H9H4 285 aa3.53□□□□□ -1.84
MCF2-202ENST00000370573 LRFN1Q9P244 771 aa3.53□□□□□ -1.84
MCF2-202ENST00000370573 SLC2A6Q9UGQ3 507 aa3.53□□□□□ -1.84
MCF2-202ENST00000370573 PLA2G4CQ9UP65 541 aa3.53□□□□□ -1.84
MCF2-202ENST00000370573 PIAS3Q9Y6X2 628 aa3.53□□□□□ -1.84
MCF2-202ENST00000370573 TCF20Q9UGU0 1960 aaKnown RBP3.53□□□□□ -1.84
MCF2-202ENST00000370573 FAM237BA0A1B0GVD1 139 aa3.53□□□□□ -1.85
MCF2-202ENST00000370573 TCRBV9S1A1TA0A576 114 aa3.53□□□□□ -1.85
MCF2-202ENST00000370573 MROH6A6NGR9 719 aa3.53□□□□□ -1.85
MCF2-202ENST00000370573 AQP12BA6NM10 295 aa3.53□□□□□ -1.85
MCF2-202ENST00000370573 ANKRD66B4E2M5 251 aa3.53□□□□□ -1.85
MCF2-202ENST00000370573 ATP8B1O43520 1251 aa3.53□□□□□ -1.85
MCF2-202ENST00000370573 LDB2O43679 373 aa3.53□□□□□ -1.85
MCF2-202ENST00000370573 BUD23O43709 281 aaKnown RBP3.53□□□□□ -1.85
MCF2-202ENST00000370573 UGT1A9O60656 530 aa3.53□□□□□ -1.85
MCF2-202ENST00000370573 ALDH1A2O94788 518 aa3.53□□□□□ -1.85
MCF2-202ENST00000370573 SYF2O95926 243 aaKnown RBP3.53□□□□□ -1.85
MCF2-202ENST00000370573 FGF1P05230 155 aa3.53□□□□□ -1.85
MCF2-202ENST00000370573 UGT2B4P06133 528 aa3.53□□□□□ -1.85
MCF2-202ENST00000370573 ABHD2P08910 425 aa3.53□□□□□ -1.85
MCF2-202ENST00000370573 ALPIP09923 528 aa3.53□□□□□ -1.85
MCF2-202ENST00000370573 ALADP13716 330 aa3.53□□□□□ -1.85
MCF2-202ENST00000370573 CTPS1P17812 591 aa3.53□□□□□ -1.85
MCF2-202ENST00000370573 PGAM1P18669 254 aa3.53□□□□□ -1.85
MCF2-202ENST00000370573 HLA-DPA1P20036 260 aa3.53□□□□□ -1.85
MCF2-202ENST00000370573 CD72P21854 359 aa3.53□□□□□ -1.85
MCF2-202ENST00000370573 CALRP27797 417 aaKnown RBP3.53□□□□□ -1.85
MCF2-202ENST00000370573 NNMTP40261 264 aa3.53□□□□□ -1.85
MCF2-202ENST00000370573 ARCN1P48444 511 aaKnown RBP3.53□□□□□ -1.85
MCF2-202ENST00000370573 HK3P52790 923 aa3.53□□□□□ -1.85
MCF2-202ENST00000370573 ST8SIA6P61647 398 aa3.53□□□□□ -1.85
MCF2-202ENST00000370573 SEMG2Q02383 582 aa3.53□□□□□ -1.85
MCF2-202ENST00000370573 BCL2L1Q07817 233 aa3.53□□□□□ -1.85
MCF2-202ENST00000370573 ENPP2Q13822 863 aa3.53□□□□□ -1.85
MCF2-202ENST00000370573 CRYMQ14894 314 aa3.53□□□□□ -1.85
MCF2-202ENST00000370573 EIF4HQ15056 248 aaKnown RBP3.53□□□□□ -1.85
MCF2-202ENST00000370573 SMAD1Q15797 465 aaKnown RBP3.53□□□□□ -1.85
MCF2-202ENST00000370573 CNGA3Q16281 694 aa3.53□□□□□ -1.85
MCF2-202ENST00000370573 SLC44A4Q53GD3 710 aa3.53□□□□□ -1.85
MCF2-202ENST00000370573 TMEM196Q5HYL7 178 aa3.53□□□□□ -1.85
MCF2-202ENST00000370573 C3orf38Q5JPI3 329 aa3.53□□□□□ -1.85
MCF2-202ENST00000370573 ARMC12Q5T9G4 340 aa3.53□□□□□ -1.85
MCF2-202ENST00000370573 PRAMEF9Q5VWM5 478 aa3.53□□□□□ -1.85
MCF2-202ENST00000370573 STEAP3Q658P3 488 aa3.53□□□□□ -1.85
MCF2-202ENST00000370573 FAAH2Q6GMR7 532 aa3.53□□□□□ -1.85
MCF2-202ENST00000370573 CASC4Q6P4E1 433 aa3.53□□□□□ -1.85
MCF2-202ENST00000370573 LRIG3Q6UXM1 1119 aa3.53□□□□□ -1.85
MCF2-202ENST00000370573 CD300LDQ6UXZ3 194 aa3.53□□□□□ -1.85
MCF2-202ENST00000370573 GDPD4Q6W3E5 623 aa3.53□□□□□ -1.85
MCF2-202ENST00000370573 RALGPS2Q86X27 583 aaPredicted RBP3.53□□□□□ -1.85
MCF2-202ENST00000370573 ADHFE1Q8IWW8 467 aa3.53□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms