RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 NT5C1B-RDH14C9J2C7 533 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 L7N2F9 121 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 TP73O15350 636 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 TGFB1I1O43294 461 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 DBIP07108 87 aaKnown RBP6.36□□□□□ -1.39
UPF2-201ENST00000356352 RAP2AP10114 183 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 PEPDP12955 493 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 ATF6P18850 670 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 ARL2P36404 184 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 OR3A3P47888 321 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 OR3A2P47893 321 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 HCAR3P49019 387 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 RPS14P62263 151 aaKnown RBP6.36□□□□□ -1.39
UPF2-201ENST00000356352 VAMP2P63027 116 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 CYP4F8P98187 520 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 SNTA1Q13424 505 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 SIM2Q14190 667 aaPredicted RBP6.36□□□□□ -1.39
UPF2-201ENST00000356352 CARD16Q5EG05 197 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 PRR23BQ6ZRT6 265 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 LPGAT1Q92604 370 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 NODALQ96S42 347 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 WRAP53Q9BUR4 548 aaKnown RBP6.36□□□□□ -1.39
UPF2-201ENST00000356352 TMEM109Q9BVC6 243 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 HHATLQ9HCP6 504 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 ACP6Q9NPH0 428 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 ITM2CQ9NQX7 267 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 DKK3Q9UBP4 350 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 DNAJB9Q9UBS3 223 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 PACSIN3Q9UKS6 424 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 TRIM64A6NGJ6 449 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 TFECO14948 347 aaPredicted RBP6.36□□□□□ -1.39
UPF2-201ENST00000356352 SEPT4O43236 478 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 ZBTB11O95625 1053 aaPredicted RBP6.36□□□□□ -1.39
UPF2-201ENST00000356352 PLGP00747 810 aaPredicted RBP6.36□□□□□ -1.39
UPF2-201ENST00000356352 PRH1P02810 166 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 SPATA31D3P0C874 917 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 CBSLP0DN79 551 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 PGAM2P15259 253 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 SP100P23497 879 aaPredicted RBP6.36□□□□□ -1.39
UPF2-201ENST00000356352 CBSP35520 551 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 CDKN2BP42772 138 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 VLDLRP98155 873 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 PUM1Q14671 1186 aaKnown RBP eCLIP6.36□□□□□ -1.391e-7■■□□□ 11.8
UPF2-201ENST00000356352 SPIN4Q56A73 249 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 RNASE12Q5GAN4 147 aaKnown RBP6.36□□□□□ -1.39
UPF2-201ENST00000356352 KIAA0930Q6ICG6 404 aaPredicted RBP6.36□□□□□ -1.39
UPF2-201ENST00000356352 SPATA31D4Q6ZUB0 917 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 FRMD7Q6ZUT3 714 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 LRRC70Q7Z2Q7 622 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 P4HA3Q7Z4N8 544 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 RALGPS2Q86X27 583 aaPredicted RBP6.36□□□□□ -1.39
UPF2-201ENST00000356352 OR10H4Q8NGA5 316 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 ZCCHC10Q8TBK6 192 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 TRPM4Q8TD43 1214 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 GAL3ST3Q96A11 431 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 KLRG1Q96E93 195 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 CPXM1Q96SM3 734 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 KAT8Q9H7Z6 458 aaKnown RBP6.36□□□□□ -1.39
UPF2-201ENST00000356352 ANKRA2Q9H9E1 313 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 CLEC4AQ9UMR7 237 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 CNTN6Q9UQ52 1028 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 PDE10AQ9Y233 779 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 STXBP5LQ9Y2K9 1186 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 NOX1Q9Y5S8 564 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 PREX1Q8TCU6 1659 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 TEX13CA0A0J9YWL9 993 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 DAPL1A0PJW8 107 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 TNFRSF10BO14763 440 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 RB1P06400 928 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 ITGB5P18084 799 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 PVALBP20472 110 aaPredicted RBP6.36□□□□□ -1.39
UPF2-201ENST00000356352 APLP1P51693 650 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 PLEKHG4Q58EX7 1191 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 AHSA2Q719I0 299 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 SLC29A4Q7RTT9 530 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 CLNKQ7Z7G1 428 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 AMZ2Q86W34 360 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 C7orf57Q8NEG2 295 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 IL31RAQ8NI17 732 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 SLC13A3Q8WWT9 602 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 AKAP1Q92667 903 aaKnown RBP eCLIP6.36□□□□□ -1.39
UPF2-201ENST00000356352 COQ8BQ96D53 544 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 EFCAB11Q9BUY7 163 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 DUSP26Q9BV47 211 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 WDR55Q9H6Y2 383 aaPredicted RBP6.36□□□□□ -1.39
UPF2-201ENST00000356352 ABCB9Q9NP78 766 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 C11orf16Q9NQ32 467 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 PCDH10Q9P2E7 1040 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 IL36AQ9UHA7 158 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 FBXW11Q9UKB1 542 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 MST1RQ04912 1400 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 PLOD2O00469 737 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 SLC6A4P31645 630 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 ACSL1P33121 698 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 MLLT3P42568 568 aaPredicted RBP6.36□□□□□ -1.39
UPF2-201ENST00000356352 NCBP2P52298 156 aaKnown RBP eCLIP6.36□□□□□ -1.391e-6■■□□□ 13
UPF2-201ENST00000356352 RAB15P59190 212 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 C1QTNF8P60827 252 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 HERC3Q15034 1050 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 LACTB2Q53H82 288 aaPredicted RBP6.36□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms