RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 DAG1Q14118 895 aa8.55□□□□□ -1.04
RTN3-202ENST00000339997 ODF4Q2M2E3 257 aa8.55□□□□□ -1.04
RTN3-202ENST00000339997 ZBED5Q49AG3 693 aa8.55□□□□□ -1.04
RTN3-202ENST00000339997 RAB6CQ53S08 254 aa8.55□□□□□ -1.04
RTN3-202ENST00000339997 TSTD2Q5T7W7 516 aa8.55□□□□□ -1.04
RTN3-202ENST00000339997 TXNDC11Q6PKC3 985 aa8.55□□□□□ -1.04
RTN3-202ENST00000339997 TIGD4Q8IY51 512 aa8.55□□□□□ -1.04
RTN3-202ENST00000339997 ZZZ3Q8IYH5 903 aa8.55□□□□□ -1.04
RTN3-202ENST00000339997 LEMD2Q8NC56 503 aa8.55□□□□□ -1.04
RTN3-202ENST00000339997 HJURPQ8NCD3 748 aaPredicted RBP8.55□□□□□ -1.04
RTN3-202ENST00000339997 TRIM43Q96BQ3 446 aaPredicted RBP8.55□□□□□ -1.04
RTN3-202ENST00000339997 ZCCHC2Q9C0B9 1178 aaKnown RBP8.55□□□□□ -1.04
RTN3-202ENST00000339997 RAB6CQ9H0N0 254 aa8.55□□□□□ -1.04
RTN3-202ENST00000339997 GBA2Q9HCG7 927 aaPredicted RBP8.55□□□□□ -1.04
RTN3-202ENST00000339997 PIGVQ9NUD9 493 aa8.55□□□□□ -1.04
RTN3-202ENST00000339997 DHRS7Q9Y394 339 aa8.55□□□□□ -1.04
RTN3-202ENST00000339997 CHD2O14647 1828 aaKnown RBP8.55□□□□□ -1.04
RTN3-202ENST00000339997 LTN1O94822 1766 aa8.55□□□□□ -1.04
RTN3-202ENST00000339997 RNASEH2AO75792 299 aaKnown RBP8.55□□□□□ -1.04
RTN3-202ENST00000339997 CHRM1P11229 460 aaPredicted RBP8.55□□□□□ -1.04
RTN3-202ENST00000339997 LILRA4P59901 499 aa8.55□□□□□ -1.04
RTN3-202ENST00000339997 ZNF267Q14586 743 aaPredicted RBP8.55□□□□□ -1.04
RTN3-202ENST00000339997 ANKRD26P1Q6NSI1 321 aa8.55□□□□□ -1.04
RTN3-202ENST00000339997 ULK3Q6PHR2 472 aa8.55□□□□□ -1.04
RTN3-202ENST00000339997 PRSS58Q8IYP2 241 aa8.55□□□□□ -1.04
RTN3-202ENST00000339997 CFAP206Q8IYR0 622 aa8.55□□□□□ -1.04
RTN3-202ENST00000339997 FAXDC2Q96IV6 333 aa8.55□□□□□ -1.04
RTN3-202ENST00000339997 EBF1Q9UH73 591 aa8.55□□□□□ -1.04
RTN3-202ENST00000339997 PHF24Q9UPV7 400 aa8.55□□□□□ -1.04
RTN3-202ENST00000339997 PCDHA2Q9Y5H9 948 aa8.55□□□□□ -1.04
RTN3-202ENST00000339997 TRPV2Q9Y5S1 764 aa8.55□□□□□ -1.04
RTN3-202ENST00000339997 ROBO3Q96MS0 1386 aa8.55□□□□□ -1.04
RTN3-202ENST00000339997 GLYATL1P3A0A0U1RQE8 302 aa8.55□□□□□ -1.04
RTN3-202ENST00000339997 SLC30A4O14863 429 aa8.55□□□□□ -1.04
RTN3-202ENST00000339997 NME6O75414 186 aaPredicted RBP8.55□□□□□ -1.04
RTN3-202ENST00000339997 ZNF432O94892 652 aa8.55□□□□□ -1.04
RTN3-202ENST00000339997 CLDN9O95484 217 aa8.55□□□□□ -1.04
RTN3-202ENST00000339997 SNHG28P0DPA3 235 aa8.55□□□□□ -1.04
RTN3-202ENST00000339997 RHDQ02161 417 aa8.55□□□□□ -1.04
RTN3-202ENST00000339997 DSC3Q14574 896 aa8.55□□□□□ -1.04
RTN3-202ENST00000339997 DCST1Q5T197 706 aa8.55□□□□□ -1.04
RTN3-202ENST00000339997 FRRS1Q6ZNA5 592 aa8.55□□□□□ -1.04
RTN3-202ENST00000339997 GALNT10Q86SR1 603 aa8.55□□□□□ -1.04
RTN3-202ENST00000339997 C11orf65Q8NCR3 313 aa8.55□□□□□ -1.04
RTN3-202ENST00000339997 TRPV1Q8NER1 839 aa8.55□□□□□ -1.04
RTN3-202ENST00000339997 SUSD6Q92537 303 aa8.55□□□□□ -1.04
RTN3-202ENST00000339997 CLP1Q92989 425 aaKnown RBP8.55□□□□□ -1.04
RTN3-202ENST00000339997 ASB9Q96DX5 294 aa8.55□□□□□ -1.04
RTN3-202ENST00000339997 GPR20Q99678 358 aa8.55□□□□□ -1.04
RTN3-202ENST00000339997 HERPUD2Q9BSE4 406 aa8.55□□□□□ -1.04
RTN3-202ENST00000339997 WACQ9BTA9 647 aa8.55□□□□□ -1.04
RTN3-202ENST00000339997 BRINP2Q9C0B6 783 aa8.55□□□□□ -1.04
RTN3-202ENST00000339997 BRD7Q9NPI1 651 aa8.55□□□□□ -1.04
RTN3-202ENST00000339997 SACM1LQ9NTJ5 587 aa8.55□□□□□ -1.04
RTN3-202ENST00000339997 FBXW2Q9UKT8 454 aa8.55□□□□□ -1.04
RTN3-202ENST00000339997 HEMK1Q9Y5R4 338 aaPredicted RBP8.55□□□□□ -1.04
RTN3-202ENST00000339997 APC2O95996 2303 aa8.55□□□□□ -1.04
RTN3-202ENST00000339997 K7EPI3 171 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 MTA2O94776 668 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 HIST1H2ABP04908 130 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 ACADMP11310 421 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 MAP2K4P45985 399 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 FCGRTP55899 365 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 ILF2Q12905 390 aaKnown RBP8.54□□□□□ -1.04
RTN3-202ENST00000339997 TUBB3Q13509 450 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 TPRG1LQ5T0D9 272 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 OR4F3Q6IEY1 312 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 CES5AQ6NT32 575 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 DCLRE1AQ6PJP8 1040 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 RPTNQ6XPR3 784 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 HIST3H2AQ7L7L0 130 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 SPATA19Q7Z5L4 167 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 DNAJB7Q7Z6W7 309 aaPredicted RBP8.54□□□□□ -1.04
RTN3-202ENST00000339997 FOXRED2Q8IWF2 684 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 PTCD2Q8WV60 388 aaKnown RBP8.54□□□□□ -1.04
RTN3-202ENST00000339997 ASB12Q8WXK4 309 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 HIST1H2ACQ93077 130 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 ZNF607Q96SK3 696 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 EHD1Q9H4M9 534 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 PDZD7Q9H5P4 517 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 MINDY3Q9H8M7 445 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 NRCAMQ92823 1304 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 MAGEB17A8MXT2 336 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 NEDD8-MDP1E9PL57 170 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 ZW10O43264 779 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 ZNF806P0C7X5 589 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 UROSP10746 265 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 OR1E2P47887 323 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 ZNF132P52740 706 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 RGS8P57771 180 aaPredicted RBP8.54□□□□□ -1.04
RTN3-202ENST00000339997 SF1Q15637 639 aaKnown RBP8.54□□□□□ -1.04
RTN3-202ENST00000339997 SNAP47Q5SQN1 464 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 MON1AQ86VX9 555 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 SERPINA9Q86WD7 417 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 SNX29P2Q8IUI4 249 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 CNIH3Q8TBE1 160 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 BPIFB1Q8TDL5 484 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 ADAMTS15Q8TE58 950 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 ZNF354BQ96LW1 612 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 RNF39Q9H2S5 420 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms