RNA–Protein interactions for RNA: ENST00000293441.5

SHANK1-201, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHANK1, Length 6,643 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-201ENST00000293441 C7orf26Q96N11 449 aa17■□□□□ 0.31
SHANK1-201ENST00000293441 SPATA9Q9BWV2 254 aa17■□□□□ 0.31
SHANK1-201ENST00000293441 C1QTNF1Q9BXJ1 281 aa17■□□□□ 0.31
SHANK1-201ENST00000293441 FADS3Q9Y5Q0 445 aa17■□□□□ 0.31
SHANK1-201ENST00000293441 SHPRHQ149N8 1683 aa16.99■□□□□ 0.31
SHANK1-201ENST00000293441 SRRM3A6NNA2 597 aaPredicted RBP16.99■□□□□ 0.31
SHANK1-201ENST00000293441 NIPSNAP2O75323 286 aa16.99■□□□□ 0.31
SHANK1-201ENST00000293441 PRPS2P11908 318 aa16.99■□□□□ 0.31
SHANK1-201ENST00000293441 IDH3AP50213 366 aa16.99■□□□□ 0.31
SHANK1-201ENST00000293441 UAP1L1Q3KQV9 507 aa16.99■□□□□ 0.31
SHANK1-201ENST00000293441 EOGTQ5NDL2 527 aa16.99■□□□□ 0.31
SHANK1-201ENST00000293441 ZDHHC3Q9NYG2 299 aa16.99■□□□□ 0.31
SHANK1-201ENST00000293441 RSL24D1Q9UHA3 163 aaKnown RBP16.99■□□□□ 0.31
SHANK1-201ENST00000293441 RSL1D1O76021 490 aaKnown RBP16.99■□□□□ 0.31
SHANK1-201ENST00000293441 ALOX5P09917 674 aa16.99■□□□□ 0.31
SHANK1-201ENST00000293441 MYCLP1P12525 358 aaPredicted RBP16.99■□□□□ 0.31
SHANK1-201ENST00000293441 HOXB6P17509 224 aaKnown RBP16.99■□□□□ 0.31
SHANK1-201ENST00000293441 OC90Q02509 493 aaPredicted RBP16.99■□□□□ 0.31
SHANK1-201ENST00000293441 MPP5Q8N3R9 675 aa16.99■□□□□ 0.31
SHANK1-201ENST00000293441 RBM15BQ8NDT2 890 aaKnown RBP16.99■□□□□ 0.31
SHANK1-201ENST00000293441 PYCR2Q96C36 320 aa16.99■□□□□ 0.31
SHANK1-201ENST00000293441 ZBED6CLQ96FA7 236 aaPredicted RBP16.99■□□□□ 0.31
SHANK1-201ENST00000293441 RUVBL1Q9Y265 456 aaKnown RBP16.99■□□□□ 0.31
SHANK1-201ENST00000293441 PIK3C2AO00443 1686 aa16.99■□□□□ 0.31
SHANK1-201ENST00000293441 PEAK1Q9H792 1746 aa16.99■□□□□ 0.31
SHANK1-201ENST00000293441 PSMD9O00233 223 aa16.99■□□□□ 0.31
SHANK1-201ENST00000293441 NME6O75414 186 aaPredicted RBP16.99■□□□□ 0.31
SHANK1-201ENST00000293441 TGFB1P01137 390 aa16.99■□□□□ 0.31
SHANK1-201ENST00000293441 STATHP02808 62 aa16.99■□□□□ 0.31
SHANK1-201ENST00000293441 ACVRL1P37023 503 aa16.99■□□□□ 0.31
SHANK1-201ENST00000293441 FBXO42Q6P3S6 717 aa16.99■□□□□ 0.31
SHANK1-201ENST00000293441 NUP54Q7Z3B4 507 aa16.99■□□□□ 0.31
SHANK1-201ENST00000293441 YIPF4Q9BSR8 244 aa16.99■□□□□ 0.31
SHANK1-201ENST00000293441 UNC93B1Q9H1C4 597 aa16.99■□□□□ 0.31
SHANK1-201ENST00000293441 MED31Q9Y3C7 131 aa16.99■□□□□ 0.31
SHANK1-201ENST00000293441 J3KR12 359 aa16.99■□□□□ 0.31
SHANK1-201ENST00000293441 K7EPI3 171 aa16.99■□□□□ 0.31
SHANK1-201ENST00000293441 GSTT1P30711 240 aa16.99■□□□□ 0.31
SHANK1-201ENST00000293441 TAS2R39P59534 338 aa16.99■□□□□ 0.31
SHANK1-201ENST00000293441 RPP38P78345 283 aaKnown RBP16.99■□□□□ 0.31
SHANK1-201ENST00000293441 SCRN3Q0VDG4 424 aa16.99■□□□□ 0.31
SHANK1-201ENST00000293441 CHRNA6Q15825 494 aa16.99■□□□□ 0.31
SHANK1-201ENST00000293441 SMU1Q2TAY7 513 aa16.99■□□□□ 0.31
SHANK1-201ENST00000293441 LYSMD3Q7Z3D4 306 aa16.99■□□□□ 0.31
SHANK1-201ENST00000293441 CLNKQ7Z7G1 428 aa16.99■□□□□ 0.31
SHANK1-201ENST00000293441 CROCCP3Q8IVE0 287 aa16.99■□□□□ 0.31
SHANK1-201ENST00000293441 HCAR2Q8TDS4 363 aa16.99■□□□□ 0.31
SHANK1-201ENST00000293441 BHLHE41Q9C0J9 482 aaPredicted RBP16.99■□□□□ 0.31
SHANK1-201ENST00000293441 TPK1Q9H3S4 243 aa16.99■□□□□ 0.31
SHANK1-201ENST00000293441 BCAS3Q9H6U6 928 aa16.99■□□□□ 0.31
SHANK1-201ENST00000293441 PIGVQ9NUD9 493 aa16.99■□□□□ 0.31
SHANK1-201ENST00000293441 DNAAF2Q9NVR5 837 aaKnown RBP16.99■□□□□ 0.31
SHANK1-201ENST00000293441 SLC17A6Q9P2U8 582 aa16.99■□□□□ 0.31
SHANK1-201ENST00000293441 CNTN6Q9UQ52 1028 aa16.99■□□□□ 0.31
SHANK1-201ENST00000293441 GNEQ9Y223 722 aaKnown RBP16.99■□□□□ 0.31
SHANK1-201ENST00000293441 SLC11A1P49279 550 aa16.99■□□□□ 0.31
SHANK1-201ENST00000293441 RPS14P62263 151 aaKnown RBP16.99■□□□□ 0.31
SHANK1-201ENST00000293441 GHRHRQ02643 423 aa16.99■□□□□ 0.31
SHANK1-201ENST00000293441 FAM174BQ3ZCQ3 159 aa16.99■□□□□ 0.31
SHANK1-201ENST00000293441 TNFAIP8L2Q6P589 184 aaPredicted RBP16.99■□□□□ 0.31
SHANK1-201ENST00000293441 UTS2BQ765I0 119 aa16.99■□□□□ 0.31
SHANK1-201ENST00000293441 PGAM4Q8N0Y7 254 aa16.99■□□□□ 0.31
SHANK1-201ENST00000293441 EDDM13A0A1B0GTR0 161 aa16.98■□□□□ 0.31
SHANK1-201ENST00000293441 PCDH7O60245 1069 aa16.98■□□□□ 0.31
SHANK1-201ENST00000293441 CCNB2O95067 398 aa16.98■□□□□ 0.31
SHANK1-201ENST00000293441 CHRNA1P02708 482 aa16.98■□□□□ 0.31
SHANK1-201ENST00000293441 IFNA6P05013 189 aa16.98■□□□□ 0.31
SHANK1-201ENST00000293441 PTGIRP43119 386 aa16.98■□□□□ 0.31
SHANK1-201ENST00000293441 SLC10A7Q0GE19 358 aa16.98■□□□□ 0.31
SHANK1-201ENST00000293441 UBAP2Q5T6F2 1119 aaKnown RBP16.98■□□□□ 0.31
SHANK1-201ENST00000293441 CDH24Q86UP0 819 aa16.98■□□□□ 0.31
SHANK1-201ENST00000293441 ARL10Q8N8L6 244 aa16.98■□□□□ 0.31
SHANK1-201ENST00000293441 FCRL5Q96RD9 977 aa16.98■□□□□ 0.31
SHANK1-201ENST00000293441 CLCA3PQ9Y6N3 262 aa16.98■□□□□ 0.31
SHANK1-201ENST00000293441 FAM149AA5PLN7 773 aa16.98■□□□□ 0.31
SHANK1-201ENST00000293441 ITGA3P26006 1051 aa16.98■□□□□ 0.31
SHANK1-201ENST00000293441 TRMT10BQ6PF06 316 aaKnown RBP16.98■□□□□ 0.31
SHANK1-201ENST00000293441 GJD3Q8N144 294 aa16.98■□□□□ 0.31
SHANK1-201ENST00000293441 SUN3Q8TAQ9 357 aa16.98■□□□□ 0.31
SHANK1-201ENST00000293441 ZNF570Q96NI8 536 aa16.98■□□□□ 0.31
SHANK1-201ENST00000293441 AJAP1Q9UKB5 411 aaPredicted RBP16.98■□□□□ 0.31
SHANK1-201ENST00000293441 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP16.98■□□□□ 0.31
SHANK1-201ENST00000293441 DMTF1Q9Y222 760 aa16.98■□□□□ 0.31
SHANK1-201ENST00000293441 GABRDO14764 452 aa16.98■□□□□ 0.31
SHANK1-201ENST00000293441 NPHS1O60500 1241 aa16.98■□□□□ 0.31
SHANK1-201ENST00000293441 AGXTP21549 392 aa16.98■□□□□ 0.31
SHANK1-201ENST00000293441 SLBPQ14493 270 aaKnown RBP eCLIP16.98■□□□□ 0.31
SHANK1-201ENST00000293441 C6orf52Q5T4I8 152 aa16.98■□□□□ 0.31
SHANK1-201ENST00000293441 NCBP2-AS2Q69YL0 99 aa16.98■□□□□ 0.31
SHANK1-201ENST00000293441 MFSD5Q6N075 450 aa16.98■□□□□ 0.31
SHANK1-201ENST00000293441 CMTM8Q8IZV2 173 aa16.98■□□□□ 0.31
SHANK1-201ENST00000293441 TMEM145Q8NBT3 493 aa16.98■□□□□ 0.31
SHANK1-201ENST00000293441 OR4C6Q8NH72 309 aa16.98■□□□□ 0.31
SHANK1-201ENST00000293441 BPIFB1Q8TDL5 484 aa16.98■□□□□ 0.31
SHANK1-201ENST00000293441 ZNF514Q96K75 400 aaPredicted RBP16.98■□□□□ 0.31
SHANK1-201ENST00000293441 AP2A2O94973 939 aa16.98■□□□□ 0.31
SHANK1-201ENST00000293441 VIPR1P32241 457 aa16.98■□□□□ 0.31
SHANK1-201ENST00000293441 IL18Q14116 193 aa16.98■□□□□ 0.31
SHANK1-201ENST00000293441 KIAA0930Q6ICG6 404 aaPredicted RBP16.98■□□□□ 0.31
SHANK1-201ENST00000293441 CHST4Q8NCG5 386 aa16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 6.7 ms