RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 GOLGA7Q7Z5G4 137 aa13.78□□□□□ -0.2
SS18-201ENST00000269137 FBXL8Q96CD0 374 aa13.78□□□□□ -0.2
SS18-201ENST00000269137 SCARF2Q96GP6 870 aaPredicted RBP13.78□□□□□ -0.2
SS18-201ENST00000269137 FOXQ1Q9C009 403 aa13.78□□□□□ -0.2
SS18-201ENST00000269137 FZD3Q9NPG1 666 aa13.78□□□□□ -0.2
SS18-201ENST00000269137 SAR1AQ9NR31 198 aa13.78□□□□□ -0.2
SS18-201ENST00000269137 OPTCQ9UBM4 332 aa13.78□□□□□ -0.2
SS18-201ENST00000269137 SLC23A2Q9UGH3 650 aa13.78□□□□□ -0.2
SS18-201ENST00000269137 SLC12A4Q9UP95 1085 aa13.78□□□□□ -0.2
SS18-201ENST00000269137 SDHDO14521 159 aa13.77□□□□□ -0.21
SS18-201ENST00000269137 FPGTO14772 594 aa13.77□□□□□ -0.21
SS18-201ENST00000269137 KCNJ13O60928 360 aa13.77□□□□□ -0.21
SS18-201ENST00000269137 JUNP05412 331 aaKnown RBP13.77□□□□□ -0.21
SS18-201ENST00000269137 ACADLP28330 430 aa13.77□□□□□ -0.21
SS18-201ENST00000269137 SLC6A12P48065 614 aa13.77□□□□□ -0.21
SS18-201ENST00000269137 BTKQ06187 659 aa13.77□□□□□ -0.21
SS18-201ENST00000269137 DMPKQ09013 629 aa13.77□□□□□ -0.21
SS18-201ENST00000269137 CDC16Q13042 620 aa13.77□□□□□ -0.21
SS18-201ENST00000269137 NFE2L1Q14494 772 aa13.77□□□□□ -0.21
SS18-201ENST00000269137 PDCD2Q16342 344 aaPredicted RBP13.77□□□□□ -0.21
SS18-201ENST00000269137 RBBP7Q16576 425 aa13.77□□□□□ -0.21
SS18-201ENST00000269137 SPRED3Q2MJR0 410 aa13.77□□□□□ -0.21
SS18-201ENST00000269137 METRNLQ641Q3 311 aa13.77□□□□□ -0.21
SS18-201ENST00000269137 FAM83HQ6ZRV2 1179 aaPredicted RBP13.77□□□□□ -0.21
SS18-201ENST00000269137 ACAD11Q709F0 780 aa13.77□□□□□ -0.21
SS18-201ENST00000269137 LRRC70Q7Z2Q7 622 aa13.77□□□□□ -0.21
SS18-201ENST00000269137 SYVN1Q86TM6 617 aa13.77□□□□□ -0.21
SS18-201ENST00000269137 CHCHD4Q8N4Q1 142 aa13.77□□□□□ -0.21
SS18-201ENST00000269137 TEX9Q8N6V9 391 aa13.77□□□□□ -0.21
SS18-201ENST00000269137 ACTRT2Q8TDY3 377 aa13.77□□□□□ -0.21
SS18-201ENST00000269137 ATL1Q8WXF7 558 aa13.77□□□□□ -0.21
SS18-201ENST00000269137 CLDN23Q96B33 292 aa13.77□□□□□ -0.21
SS18-201ENST00000269137 CCDC138Q96M89 665 aa13.77□□□□□ -0.21
SS18-201ENST00000269137 OR52B2Q96RD2 323 aa13.77□□□□□ -0.21
SS18-201ENST00000269137 TIMM29Q9BSF4 260 aa13.77□□□□□ -0.21
SS18-201ENST00000269137 NUSAP1Q9BXS6 441 aaKnown RBP13.77□□□□□ -0.21
SS18-201ENST00000269137 OR52A5Q9H2C5 316 aa13.77□□□□□ -0.21
SS18-201ENST00000269137 RASSF4Q9H2L5 321 aa13.77□□□□□ -0.21
SS18-201ENST00000269137 NOL11Q9H8H0 719 aaKnown RBP13.77□□□□□ -0.21
SS18-201ENST00000269137 THEGQ9P2T0 379 aa13.77□□□□□ -0.21
SS18-201ENST00000269137 ZNF225Q9UK10 706 aa13.77□□□□□ -0.21
SS18-201ENST00000269137 PRKAB1Q9Y478 270 aa13.77□□□□□ -0.21
SS18-201ENST00000269137 HS3ST3A1Q9Y663 406 aa13.77□□□□□ -0.21
SS18-201ENST00000269137 A0A1B0GTL3 188 aa13.76□□□□□ -0.21
SS18-201ENST00000269137 POM121BA6NF01 834 aa13.76□□□□□ -0.21
SS18-201ENST00000269137 OR7A17O14581 309 aa13.76□□□□□ -0.21
SS18-201ENST00000269137 GIPC1O14908 333 aa13.76□□□□□ -0.21
SS18-201ENST00000269137 ZNF217O75362 1048 aa13.76□□□□□ -0.21
SS18-201ENST00000269137 OTCP00480 354 aa13.76□□□□□ -0.21
SS18-201ENST00000269137 FUCA1P04066 466 aa13.76□□□□□ -0.21
SS18-201ENST00000269137 EPHA3P29320 983 aa13.76□□□□□ -0.21
SS18-201ENST00000269137 KRT72Q14CN4 511 aa13.76□□□□□ -0.21
SS18-201ENST00000269137 ZXDCQ2QGD7 858 aaPredicted RBP13.76□□□□□ -0.21
SS18-201ENST00000269137 EEF1AKMT2Q5JPI9 291 aaKnown RBP13.76□□□□□ -0.21
SS18-201ENST00000269137 TMEM31Q5JXX7 168 aa13.76□□□□□ -0.21
SS18-201ENST00000269137 CLEC6AQ6EIG7 209 aa13.76□□□□□ -0.21
SS18-201ENST00000269137 EFL1Q7Z2Z2 1120 aaKnown RBP13.76□□□□□ -0.21
SS18-201ENST00000269137 HOMEZQ8IX15 550 aa13.76□□□□□ -0.21
SS18-201ENST00000269137 CFAP61Q8NHU2 1237 aa13.76□□□□□ -0.21
SS18-201ENST00000269137 TOE1Q96GM8 510 aaKnown RBP13.76□□□□□ -0.21
SS18-201ENST00000269137 TUBB6Q9BUF5 446 aa13.76□□□□□ -0.21
SS18-201ENST00000269137 CHRDQ9H2X0 955 aa13.76□□□□□ -0.21
SS18-201ENST00000269137 SLC32A1Q9H598 525 aa13.76□□□□□ -0.21
SS18-201ENST00000269137 WDR55Q9H6Y2 383 aaPredicted RBP13.76□□□□□ -0.21
SS18-201ENST00000269137 IPPKQ9H8X2 491 aa13.76□□□□□ -0.21
SS18-201ENST00000269137 TBC1D17Q9HA65 648 aa13.76□□□□□ -0.21
SS18-201ENST00000269137 KLC4Q9NSK0 619 aa13.76□□□□□ -0.21
SS18-201ENST00000269137 WSB2Q9NYS7 404 aaPredicted RBP13.76□□□□□ -0.21
SS18-201ENST00000269137 ZNHIT2Q9UHR6 403 aa13.76□□□□□ -0.21
SS18-201ENST00000269137 CYP8B1Q9UNU6 501 aa13.76□□□□□ -0.21
SS18-201ENST00000269137 TRIM33Q9UPN9 1127 aa13.76□□□□□ -0.21
SS18-201ENST00000269137 DNAJC15Q9Y5T4 150 aa13.76□□□□□ -0.21
SS18-201ENST00000269137 CAPN14A8MX76 684 aa13.76□□□□□ -0.21
SS18-201ENST00000269137 TOR1BO14657 336 aa13.76□□□□□ -0.21
SS18-201ENST00000269137 CCNT2O60583 730 aaKnown RBP13.76□□□□□ -0.21
SS18-201ENST00000269137 ATP5HO75947 161 aa13.76□□□□□ -0.21
SS18-201ENST00000269137 C1orf105O95561 183 aa13.76□□□□□ -0.21
SS18-201ENST00000269137 UROSP10746 265 aa13.76□□□□□ -0.21
SS18-201ENST00000269137 EPB42P16452 691 aa13.76□□□□□ -0.21
SS18-201ENST00000269137 KELP23276 732 aa13.76□□□□□ -0.21
SS18-201ENST00000269137 PRDX3P30048 256 aaKnown RBP13.76□□□□□ -0.21
SS18-201ENST00000269137 AKT2P31751 481 aa13.76□□□□□ -0.21
SS18-201ENST00000269137 NUDT1P36639 197 aa13.76□□□□□ -0.21
SS18-201ENST00000269137 GDF5P43026 501 aa13.76□□□□□ -0.21
SS18-201ENST00000269137 FOXA1P55317 472 aa13.76□□□□□ -0.21
SS18-201ENST00000269137 PFN3P60673 137 aa13.76□□□□□ -0.21
SS18-201ENST00000269137 TBCCQ15814 346 aa13.76□□□□□ -0.21
SS18-201ENST00000269137 LSM12Q3MHD2 195 aaKnown RBP13.76□□□□□ -0.21
SS18-201ENST00000269137 PLA2G4EQ3MJ16 856 aa13.76□□□□□ -0.21
SS18-201ENST00000269137 KIAA0895LQ68EN5 471 aa13.76□□□□□ -0.21
SS18-201ENST00000269137 UNC5DQ6UXZ4 953 aa13.76□□□□□ -0.21
SS18-201ENST00000269137 PDZD3Q86UT5 571 aa13.76□□□□□ -0.21
SS18-201ENST00000269137 KLHDC8AQ8IYD2 350 aa13.76□□□□□ -0.21
SS18-201ENST00000269137 SPEM1Q8N4L4 309 aa13.76□□□□□ -0.21
SS18-201ENST00000269137 OR52B6Q8NGF0 335 aa13.76□□□□□ -0.21
SS18-201ENST00000269137 PRR11Q96HE9 360 aaPredicted RBP13.76□□□□□ -0.21
SS18-201ENST00000269137 BMFQ96LC9 184 aa13.76□□□□□ -0.21
SS18-201ENST00000269137 HHIPQ96QV1 700 aa13.76□□□□□ -0.21
SS18-201ENST00000269137 NTMT1Q9BV86 223 aa13.76□□□□□ -0.21
SS18-201ENST00000269137 ACTR5Q9H9F9 607 aaPredicted RBP13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms