RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 CCSAPQ6IQ19 270 aaPredicted RBP10.48□□□□□ -0.73
USP28-201ENST00000003302 GTF2H2CQ6P1K8 395 aa10.48□□□□□ -0.73
USP28-201ENST00000003302 RAB44Q7Z6P3 723 aaPredicted RBP10.48□□□□□ -0.73
USP28-201ENST00000003302 FEM1AQ9BSK4 669 aa10.48□□□□□ -0.73
USP28-201ENST00000003302 TMEM121BQ9BXQ6 578 aaPredicted RBP10.48□□□□□ -0.73
USP28-201ENST00000003302 EBPLQ9BY08 206 aa10.48□□□□□ -0.73
USP28-201ENST00000003302 SERHLQ9NQF3 203 aa10.48□□□□□ -0.73
USP28-201ENST00000003302 INTS10Q9NVR2 710 aaKnown RBP10.48□□□□□ -0.73
USP28-201ENST00000003302 UBA2Q9UBT2 640 aaPredicted RBP10.48□□□□□ -0.73
USP28-201ENST00000003302 TRMT6Q9UJA5 497 aaKnown RBP10.48□□□□□ -0.73
USP28-201ENST00000003302 BTBD3Q9Y2F9 522 aa10.48□□□□□ -0.73
USP28-201ENST00000003302 SLC30A1Q9Y6M5 507 aa10.48□□□□□ -0.73
USP28-201ENST00000003302 ANAPC1Q9H1A4 1944 aa10.48□□□□□ -0.73
USP28-201ENST00000003302 E5RI56 91 aa10.48□□□□□ -0.73
USP28-201ENST00000003302 HS6ST1O60243 411 aa10.48□□□□□ -0.73
USP28-201ENST00000003302 CPNE6O95741 557 aa10.48□□□□□ -0.73
USP28-201ENST00000003302 ALBP02768 609 aa10.48□□□□□ -0.73
USP28-201ENST00000003302 THRBP10828 461 aa10.48□□□□□ -0.73
USP28-201ENST00000003302 CCL23P55773 120 aa10.48□□□□□ -0.73
USP28-201ENST00000003302 ISL1P61371 349 aa10.48□□□□□ -0.73
USP28-201ENST00000003302 PON2Q15165 354 aa10.48□□□□□ -0.73
USP28-201ENST00000003302 ADPRMQ3LIE5 342 aa10.48□□□□□ -0.73
USP28-201ENST00000003302 GALNT7Q86SF2 657 aa10.48□□□□□ -0.73
USP28-201ENST00000003302 MIPOL1Q8TD10 442 aa10.48□□□□□ -0.73
USP28-201ENST00000003302 BTBD2Q9BX70 525 aa10.48□□□□□ -0.73
USP28-201ENST00000003302 PFDN4Q9NQP4 134 aa10.48□□□□□ -0.73
USP28-201ENST00000003302 TLR8Q9NR97 1041 aaKnown RBP10.48□□□□□ -0.73
USP28-201ENST00000003302 WARS2Q9UGM6 360 aaKnown RBP10.48□□□□□ -0.73
USP28-201ENST00000003302 SLC45A1Q9Y2W3 748 aa10.48□□□□□ -0.73
USP28-201ENST00000003302 PCDHB5Q9Y5E4 795 aa10.48□□□□□ -0.73
USP28-201ENST00000003302 FRMPD3Q5JV73 1810 aa10.48□□□□□ -0.73
USP28-201ENST00000003302 FAM234BA2RU67 622 aa10.48□□□□□ -0.73
USP28-201ENST00000003302 PCMT1P22061 227 aa10.48□□□□□ -0.73
USP28-201ENST00000003302 CORO1AP31146 461 aaKnown RBP10.48□□□□□ -0.73
USP28-201ENST00000003302 SLC26A3P40879 764 aa10.48□□□□□ -0.73
USP28-201ENST00000003302 ALDH3A2P51648 485 aa10.48□□□□□ -0.73
USP28-201ENST00000003302 OCA2Q04671 838 aa10.48□□□□□ -0.73
USP28-201ENST00000003302 ZNF648Q5T619 568 aaPredicted RBP10.48□□□□□ -0.73
USP28-201ENST00000003302 RAVER1Q8IY67 606 aaKnown RBP10.48□□□□□ -0.73
USP28-201ENST00000003302 CACTIN-AS1Q8N1I8 211 aa10.48□□□□□ -0.73
USP28-201ENST00000003302 ATP6V0D2Q8N8Y2 350 aa10.48□□□□□ -0.73
USP28-201ENST00000003302 ABHD11Q8NFV4 315 aa10.48□□□□□ -0.73
USP28-201ENST00000003302 OR2T12Q8NG77 320 aa10.48□□□□□ -0.73
USP28-201ENST00000003302 ING2Q9H160 280 aa10.48□□□□□ -0.73
USP28-201ENST00000003302 P2RY12Q9H244 342 aa10.48□□□□□ -0.73
USP28-201ENST00000003302 CCDC68Q9H2F9 335 aa10.48□□□□□ -0.73
USP28-201ENST00000003302 RASSF1Q9NS23 344 aa10.48□□□□□ -0.73
USP28-201ENST00000003302 ERVK-18Q9QC07 812 aa10.48□□□□□ -0.73
USP28-201ENST00000003302 SLCO3A1Q9UIG8 710 aa10.48□□□□□ -0.73
USP28-201ENST00000003302 TMEM247A6NEH6 219 aa10.47□□□□□ -0.73
USP28-201ENST00000003302 ADRA2AP08913 450 aa10.47□□□□□ -0.73
USP28-201ENST00000003302 MAP4P27816 1152 aaKnown RBP10.47□□□□□ -0.73
USP28-201ENST00000003302 HTR1EP28566 365 aa10.47□□□□□ -0.73
USP28-201ENST00000003302 PTPN6P29350 595 aa10.47□□□□□ -0.73
USP28-201ENST00000003302 PARP15Q460N3 678 aa10.47□□□□□ -0.73
USP28-201ENST00000003302 CES5AQ6NT32 575 aa10.47□□□□□ -0.73
USP28-201ENST00000003302 SCUBE2Q9NQ36 999 aa10.47□□□□□ -0.73
USP28-201ENST00000003302 ITM2CQ9NQX7 267 aa10.47□□□□□ -0.73
USP28-201ENST00000003302 RBMX2Q9Y388 322 aaKnown RBP10.47□□□□□ -0.73
USP28-201ENST00000003302 G3V2T6 193 aa10.47□□□□□ -0.73
USP28-201ENST00000003302 STC2O76061 302 aa10.47□□□□□ -0.73
USP28-201ENST00000003302 SERPINA1P01009 418 aa10.47□□□□□ -0.73
USP28-201ENST00000003302 AQP1P29972 269 aa10.47□□□□□ -0.73
USP28-201ENST00000003302 DCTP40126 519 aa10.47□□□□□ -0.73
USP28-201ENST00000003302 PRSS36Q5K4E3 855 aa10.47□□□□□ -0.73
USP28-201ENST00000003302 CCNYL2Q5T2Q4 361 aa10.47□□□□□ -0.73
USP28-201ENST00000003302 SERPINA13PQ6UXR4 307 aa10.47□□□□□ -0.73
USP28-201ENST00000003302 LILRA3Q8N6C8 439 aaPredicted RBP10.47□□□□□ -0.73
USP28-201ENST00000003302 MAL2Q969L2 176 aa10.47□□□□□ -0.73
USP28-201ENST00000003302 C8orf48Q96LL4 319 aa10.47□□□□□ -0.73
USP28-201ENST00000003302 SAMD11Q96NU1 681 aa10.47□□□□□ -0.73
USP28-201ENST00000003302 ACPTQ9BZG2 426 aa10.47□□□□□ -0.73
USP28-201ENST00000003302 IL26Q9NPH9 171 aa10.47□□□□□ -0.73
USP28-201ENST00000003302 IL37Q9NZH6 218 aa10.47□□□□□ -0.73
USP28-201ENST00000003302 IL17CQ9P0M4 197 aa10.47□□□□□ -0.73
USP28-201ENST00000003302 PLXND1Q9Y4D7 1925 aa10.47□□□□□ -0.73
USP28-201ENST00000003302 F5H5T6 163 aa10.47□□□□□ -0.73
USP28-201ENST00000003302 PRAMEF1O95521 474 aa10.47□□□□□ -0.73
USP28-201ENST00000003302 ABCB1P08183 1280 aaPredicted RBP10.47□□□□□ -0.73
USP28-201ENST00000003302 OGNP20774 298 aaKnown RBP10.47□□□□□ -0.73
USP28-201ENST00000003302 JAK1P23458 1154 aa10.47□□□□□ -0.73
USP28-201ENST00000003302 ESRRGP62508 458 aa10.47□□□□□ -0.73
USP28-201ENST00000003302 RELAQ04206 551 aa10.47□□□□□ -0.73
USP28-201ENST00000003302 EMX1Q04741 257 aaPredicted RBP10.47□□□□□ -0.73
USP28-201ENST00000003302 NR1D2Q14995 579 aa10.47□□□□□ -0.73
USP28-201ENST00000003302 TBC1D21Q8IYX1 336 aa10.47□□□□□ -0.73
USP28-201ENST00000003302 SLC25A14O95258 325 aaPredicted RBP10.46□□□□□ -0.73
USP28-201ENST00000003302 PGRP06401 933 aa10.46□□□□□ -0.73
USP28-201ENST00000003302 LPOP22079 712 aaPredicted RBP10.46□□□□□ -0.73
USP28-201ENST00000003302 STK19P49842 368 aaPredicted RBP10.46□□□□□ -0.73
USP28-201ENST00000003302 C21orf59P57076 290 aa10.46□□□□□ -0.73
USP28-201ENST00000003302 MAPK11Q15759 364 aa10.46□□□□□ -0.73
USP28-201ENST00000003302 C6orf141Q5SZD1 244 aa10.46□□□□□ -0.73
USP28-201ENST00000003302 ZNF773Q6PK81 442 aa10.46□□□□□ -0.73
USP28-201ENST00000003302 GLB1LQ6UWU2 654 aa10.46□□□□□ -0.73
USP28-201ENST00000003302 ZNF554Q86TJ5 538 aa10.46□□□□□ -0.73
USP28-201ENST00000003302 BEND7Q8N7W2 519 aaPredicted RBP10.46□□□□□ -0.73
USP28-201ENST00000003302 SLC13A3Q8WWT9 602 aa10.46□□□□□ -0.73
USP28-201ENST00000003302 HERC2P3Q9BVR0 1158 aa10.46□□□□□ -0.73
USP28-201ENST00000003302 OSBPL10Q9BXB5 764 aa10.46□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms