RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 SLC7A8Q9UHI5 535 aa15.42■□□□□ 0.06
CPSF1-213ENST00000620219 PLAGL1Q9UM63 463 aa15.42■□□□□ 0.06
CPSF1-213ENST00000620219 SNRPB2P08579 225 aaKnown RBP15.42■□□□□ 0.06
CPSF1-213ENST00000620219 MAGEA12P43365 314 aa15.42■□□□□ 0.06
CPSF1-213ENST00000620219 CSNK1DP48730 415 aa15.42■□□□□ 0.06
CPSF1-213ENST00000620219 CYP4F2P78329 520 aa15.42■□□□□ 0.06
CPSF1-213ENST00000620219 XIAPP98170 497 aa15.42■□□□□ 0.06
CPSF1-213ENST00000620219 SATB1Q01826 763 aa15.42■□□□□ 0.06
CPSF1-213ENST00000620219 SULT1C3Q6IMI6 304 aa15.42■□□□□ 0.06
CPSF1-213ENST00000620219 AMZ2Q86W34 360 aa15.42■□□□□ 0.06
CPSF1-213ENST00000620219 RGL4Q8IZJ4 473 aa15.42■□□□□ 0.06
CPSF1-213ENST00000620219 FOXJ1Q92949 421 aa15.42■□□□□ 0.06
CPSF1-213ENST00000620219 SLC39A3Q9BRY0 314 aa15.42■□□□□ 0.06
CPSF1-213ENST00000620219 ANGPTL2Q9UKU9 493 aa15.42■□□□□ 0.06
CPSF1-213ENST00000620219 SORCS3Q9UPU3 1222 aa15.42■□□□□ 0.06
CPSF1-213ENST00000620219 COPG1Q9Y678 874 aaKnown RBP15.42■□□□□ 0.06
CPSF1-213ENST00000620219 KCNE2Q9Y6J6 123 aa15.42■□□□□ 0.06
CPSF1-213ENST00000620219 GRID2O43424 1007 aa15.42■□□□□ 0.06
CPSF1-213ENST00000620219 FOXA1P55317 472 aa15.42■□□□□ 0.06
CPSF1-213ENST00000620219 SYCE2Q6PIF2 218 aa15.42■□□□□ 0.06
CPSF1-213ENST00000620219 BTN2A2Q8WVV5 523 aa15.42■□□□□ 0.06
CPSF1-213ENST00000620219 UBXN10Q96LJ8 280 aa15.42■□□□□ 0.06
CPSF1-213ENST00000620219 DNAJC11Q9NVH1 559 aa15.42■□□□□ 0.06
CPSF1-213ENST00000620219 GID8Q9NWU2 228 aa15.42■□□□□ 0.06
CPSF1-213ENST00000620219 FNDC1Q4ZHG4 1894 aaPredicted RBP15.41■□□□□ 0.06
CPSF1-213ENST00000620219 CCDC154A6NI56 674 aa15.41■□□□□ 0.06
CPSF1-213ENST00000620219 SFSWAPQ12872 951 aaKnown RBP15.41■□□□□ 0.06
CPSF1-213ENST00000620219 ALG1LQ6GMV1 187 aa15.41■□□□□ 0.06
CPSF1-213ENST00000620219 ISLR2Q6UXK2 745 aa15.41■□□□□ 0.06
CPSF1-213ENST00000620219 APOLD1Q96LR9 279 aa15.41■□□□□ 0.06
CPSF1-213ENST00000620219 SLC25A23Q9BV35 468 aa15.41■□□□□ 0.06
CPSF1-213ENST00000620219 SH3BP4Q9P0V3 963 aa15.41■□□□□ 0.06
CPSF1-213ENST00000620219 ARHGAP10A1A4S6 786 aa15.41■□□□□ 0.06
CPSF1-213ENST00000620219 LOC730098B7Z3J9 87 aa15.41■□□□□ 0.06
CPSF1-213ENST00000620219 K7EPI3 171 aa15.41■□□□□ 0.06
CPSF1-213ENST00000620219 MAP3K7O43318 606 aa15.41■□□□□ 0.06
CPSF1-213ENST00000620219 CPSF4O95639 269 aaKnown RBP15.41■□□□□ 0.06
CPSF1-213ENST00000620219 CTSLP07711 333 aa15.41■□□□□ 0.06
CPSF1-213ENST00000620219 ACSM2AQ08AH3 577 aa15.41■□□□□ 0.06
CPSF1-213ENST00000620219 RALGDSQ12967 914 aa15.41■□□□□ 0.06
CPSF1-213ENST00000620219 TRIP10Q15642 601 aa15.41■□□□□ 0.06
CPSF1-213ENST00000620219 ACSM2BQ68CK6 577 aa15.41■□□□□ 0.06
CPSF1-213ENST00000620219 SUSD1Q6UWL2 747 aa15.41■□□□□ 0.06
CPSF1-213ENST00000620219 GOLGA7Q7Z5G4 137 aa15.41■□□□□ 0.06
CPSF1-213ENST00000620219 LSMEM2Q8N112 164 aa15.41■□□□□ 0.06
CPSF1-213ENST00000620219 KDM1BQ8NB78 822 aa15.41■□□□□ 0.06
CPSF1-213ENST00000620219 CROTQ9UKG9 612 aa15.41■□□□□ 0.06
CPSF1-213ENST00000620219 OAS3Q9Y6K5 1087 aaKnown RBP15.41■□□□□ 0.06
CPSF1-213ENST00000620219 A0A1W2PQU0 124 aa15.41■□□□□ 0.06
CPSF1-213ENST00000620219 FZD6O60353 706 aa15.41■□□□□ 0.06
CPSF1-213ENST00000620219 EFEMP2O95967 443 aa15.41■□□□□ 0.06
CPSF1-213ENST00000620219 CD1EP15812 388 aa15.41■□□□□ 0.06
CPSF1-213ENST00000620219 CCR7P32248 378 aa15.41■□□□□ 0.06
CPSF1-213ENST00000620219 SQLEQ14534 574 aa15.41■□□□□ 0.06
CPSF1-213ENST00000620219 IL23RQ5VWK5 629 aa15.41■□□□□ 0.06
CPSF1-213ENST00000620219 CCM2Q9BSQ5 444 aa15.41■□□□□ 0.06
CPSF1-213ENST00000620219 TNFRSF12AQ9NP84 129 aa15.41■□□□□ 0.06
CPSF1-213ENST00000620219 CD207Q9UJ71 328 aa15.41■□□□□ 0.06
CPSF1-213ENST00000620219 NYNRINQ9P2P1 1898 aaKnown RBP15.41■□□□□ 0.06
CPSF1-213ENST00000620219 PTPRDP23468 1912 aa15.41■□□□□ 0.06
CPSF1-213ENST00000620219 ABCB1P08183 1280 aaPredicted RBP15.41■□□□□ 0.06
CPSF1-213ENST00000620219 UROSP10746 265 aa15.41■□□□□ 0.06
CPSF1-213ENST00000620219 NTSR1P30989 418 aa15.41■□□□□ 0.06
CPSF1-213ENST00000620219 TRAM1L1Q8N609 369 aa15.41■□□□□ 0.06
CPSF1-213ENST00000620219 PLEKHG4BQ96PX9 1271 aa15.41■□□□□ 0.06
CPSF1-213ENST00000620219 ADAMTS6Q9UKP5 1117 aa15.41■□□□□ 0.06
CPSF1-213ENST00000620219 INVSQ9Y283 1065 aa15.41■□□□□ 0.06
CPSF1-213ENST00000620219 RNF11Q9Y3C5 154 aa15.41■□□□□ 0.06
CPSF1-213ENST00000620219 MGAT4DA6NG13 374 aa15.4■□□□□ 0.06
CPSF1-213ENST00000620219 RASGRP1O95267 797 aa15.4■□□□□ 0.06
CPSF1-213ENST00000620219 PSMG1O95456 288 aa15.4■□□□□ 0.06
CPSF1-213ENST00000620219 PTDSS1P48651 473 aaKnown RBP15.4■□□□□ 0.06
CPSF1-213ENST00000620219 CLCNKAP51800 687 aa15.4■□□□□ 0.06
CPSF1-213ENST00000620219 MRPS22P82650 360 aaKnown RBP15.4■□□□□ 0.06
CPSF1-213ENST00000620219 IL1RL1Q01638 556 aa15.4■□□□□ 0.06
CPSF1-213ENST00000620219 NLRC5Q86WI3 1866 aa15.4■□□□□ 0.06
CPSF1-213ENST00000620219 ATL1Q8WXF7 558 aa15.4■□□□□ 0.06
CPSF1-213ENST00000620219 VPS33AQ96AX1 596 aa15.4■□□□□ 0.06
CPSF1-213ENST00000620219 ECSITQ9BQ95 431 aa15.4■□□□□ 0.06
CPSF1-213ENST00000620219 POPDC3Q9HBV1 291 aa15.4■□□□□ 0.06
CPSF1-213ENST00000620219 CA14Q9ULX7 337 aa15.4■□□□□ 0.06
CPSF1-213ENST00000620219 TSC2P49815 1807 aa15.4■□□□□ 0.06
CPSF1-213ENST00000620219 CLDN9O95484 217 aa15.4■□□□□ 0.06
CPSF1-213ENST00000620219 PXNP49023 591 aaPredicted RBP15.4■□□□□ 0.06
CPSF1-213ENST00000620219 RAP1GDS1P52306 607 aa15.4■□□□□ 0.06
CPSF1-213ENST00000620219 LILRA3Q8N6C8 439 aaPredicted RBP15.4■□□□□ 0.06
CPSF1-213ENST00000620219 ICA1LQ8NDH6 482 aa15.4■□□□□ 0.06
CPSF1-213ENST00000620219 RHEBL1Q8TAI7 183 aa15.4■□□□□ 0.06
CPSF1-213ENST00000620219 TRIM8Q9BZR9 551 aa15.4■□□□□ 0.06
CPSF1-213ENST00000620219 PRSS16Q9NQE7 514 aa15.4■□□□□ 0.06
CPSF1-213ENST00000620219 HPS4Q9NQG7 708 aa15.4■□□□□ 0.06
CPSF1-213ENST00000620219 PCDHGB4Q9UN71 923 aa15.4■□□□□ 0.06
CPSF1-213ENST00000620219 SNX6Q9UNH7 406 aa15.4■□□□□ 0.06
CPSF1-213ENST00000620219 CDH23Q9H251 3354 aa15.4■□□□□ 0.06
CPSF1-213ENST00000620219 SDHDO14521 159 aa15.4■□□□□ 0.06
CPSF1-213ENST00000620219 HOXC11O43248 304 aaPredicted RBP15.4■□□□□ 0.06
CPSF1-213ENST00000620219 GNPDA1P46926 289 aa15.4■□□□□ 0.06
CPSF1-213ENST00000620219 INPP5AQ14642 412 aa15.4■□□□□ 0.06
CPSF1-213ENST00000620219 SLC44A4Q53GD3 710 aa15.4■□□□□ 0.06
CPSF1-213ENST00000620219 GALNT13Q8IUC8 556 aa15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 82 ms