RNA–Protein interactions for RNA: ENST00000613788.1

CD48-203, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,500 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-203ENST00000613788 FOXO6A8MYZ6 492 aa14.36□□□□□ -0.11
CD48-203ENST00000613788 GOLGA8RI6L899 631 aa14.36□□□□□ -0.11
CD48-203ENST00000613788 MATN4O95460 622 aa14.36□□□□□ -0.11
CD48-203ENST00000613788 RPN2P04844 631 aa14.36□□□□□ -0.11
CD48-203ENST00000613788 GSTA1P08263 222 aa14.36□□□□□ -0.11
CD48-203ENST00000613788 BRAFP15056 766 aa14.36□□□□□ -0.11
CD48-203ENST00000613788 ACADLP28330 430 aa14.36□□□□□ -0.11
CD48-203ENST00000613788 KPNA2P52292 529 aaKnown RBP14.36□□□□□ -0.11
CD48-203ENST00000613788 NHLH1Q02575 133 aa14.36□□□□□ -0.11
CD48-203ENST00000613788 CLCA4Q14CN2 919 aa14.36□□□□□ -0.11
CD48-203ENST00000613788 TSNAXIP1Q2TAA8 658 aa14.36□□□□□ -0.11
CD48-203ENST00000613788 AGBL2Q5U5Z8 902 aa14.36□□□□□ -0.11
CD48-203ENST00000613788 UNC5DQ6UXZ4 953 aa14.36□□□□□ -0.11
CD48-203ENST00000613788 SH2D5Q6ZV89 423 aa14.36□□□□□ -0.11
CD48-203ENST00000613788 KANSL1Q7Z3B3 1105 aa14.36□□□□□ -0.11
CD48-203ENST00000613788 PIWIL4Q7Z3Z4 852 aaKnown RBP14.36□□□□□ -0.11
CD48-203ENST00000613788 GATAD2AQ86YP4 633 aa14.36□□□□□ -0.11
CD48-203ENST00000613788 AVL9Q8NBF6 648 aa14.36□□□□□ -0.11
CD48-203ENST00000613788 SPDYE1Q8NFV5 336 aaPredicted RBP14.36□□□□□ -0.11
CD48-203ENST00000613788 CFAP61Q8NHU2 1237 aa14.36□□□□□ -0.11
CD48-203ENST00000613788 KCTD4Q8WVF5 259 aa14.36□□□□□ -0.11
CD48-203ENST00000613788 ALKBH8Q96BT7 664 aaKnown RBP14.36□□□□□ -0.11
CD48-203ENST00000613788 C12orf66Q96MD2 445 aa14.36□□□□□ -0.11
CD48-203ENST00000613788 INSM2Q96T92 566 aaPredicted RBP14.36□□□□□ -0.11
CD48-203ENST00000613788 NLGN3Q9NZ94 848 aa14.36□□□□□ -0.11
CD48-203ENST00000613788 TSR3Q9UJK0 312 aaKnown RBP14.36□□□□□ -0.11
CD48-203ENST00000613788 PCDHGB2Q9Y5G2 931 aa14.36□□□□□ -0.11
CD48-203ENST00000613788 ACTL7BQ9Y614 415 aa14.36□□□□□ -0.11
CD48-203ENST00000613788 COLEC10Q9Y6Z7 277 aa14.36□□□□□ -0.11
CD48-203ENST00000613788 PCDH15Q96QU1 1955 aa14.36□□□□□ -0.11
CD48-203ENST00000613788 CCDC189A1A4V9 331 aa14.36□□□□□ -0.11
CD48-203ENST00000613788 B4DGG1 531 aa14.36□□□□□ -0.11
CD48-203ENST00000613788 SLC16A5O15375 505 aa14.36□□□□□ -0.11
CD48-203ENST00000613788 FFAR2O15552 330 aa14.36□□□□□ -0.11
CD48-203ENST00000613788 ZBTB14O43829 449 aa14.36□□□□□ -0.11
CD48-203ENST00000613788 EML2O95834 649 aa14.36□□□□□ -0.11
CD48-203ENST00000613788 C8GP07360 202 aa14.36□□□□□ -0.11
CD48-203ENST00000613788 CD1DP15813 335 aa14.36□□□□□ -0.11
CD48-203ENST00000613788 XRCC1P18887 633 aaPredicted RBP14.36□□□□□ -0.11
CD48-203ENST00000613788 NDUFS1P28331 727 aa14.36□□□□□ -0.11
CD48-203ENST00000613788 IRF9Q00978 393 aa14.36□□□□□ -0.11
CD48-203ENST00000613788 SLC18A2Q05940 514 aa14.36□□□□□ -0.11
CD48-203ENST00000613788 SLC14A1Q13336 389 aa14.36□□□□□ -0.11
CD48-203ENST00000613788 KRT33BQ14525 404 aa14.36□□□□□ -0.11
CD48-203ENST00000613788 ACAP2Q15057 778 aa14.36□□□□□ -0.11
CD48-203ENST00000613788 RPE65Q16518 533 aa14.36□□□□□ -0.11
CD48-203ENST00000613788 C6orf132Q5T0Z8 1188 aa14.36□□□□□ -0.11
CD48-203ENST00000613788 TTC23LQ6PF05 361 aa14.36□□□□□ -0.11
CD48-203ENST00000613788 OGFOD3Q6PK18 319 aa14.36□□□□□ -0.11
CD48-203ENST00000613788 PRR23CQ6ZRP0 262 aa14.36□□□□□ -0.11
CD48-203ENST00000613788 CENPLQ8N0S6 344 aaPredicted RBP14.36□□□□□ -0.11
CD48-203ENST00000613788 SPATA6LQ8N4H0 392 aa14.36□□□□□ -0.11
CD48-203ENST00000613788 MAGEC3Q8TD91 643 aa14.36□□□□□ -0.11
CD48-203ENST00000613788 ASB11Q8WXH4 323 aa14.36□□□□□ -0.11
CD48-203ENST00000613788 NXNL1Q96CM4 212 aa14.36□□□□□ -0.11
CD48-203ENST00000613788 CXorf40BQ96DE9 158 aa14.36□□□□□ -0.11
CD48-203ENST00000613788 RMDN2Q96LZ7 410 aa14.36□□□□□ -0.11
CD48-203ENST00000613788 SH3GL2Q99962 352 aa14.36□□□□□ -0.11
CD48-203ENST00000613788 EDEM2Q9BV94 578 aa14.36□□□□□ -0.11
CD48-203ENST00000613788 TMEM9BQ9NQ34 198 aa14.36□□□□□ -0.11
CD48-203ENST00000613788 IMP3Q9NV31 184 aaKnown RBP14.36□□□□□ -0.11
CD48-203ENST00000613788 NOVA2Q9UNW9 492 aaKnown RBP14.36□□□□□ -0.11
CD48-203ENST00000613788 ASF1AQ9Y294 204 aa14.36□□□□□ -0.11
CD48-203ENST00000613788 KNL1Q8NG31 2342 aa14.35□□□□□ -0.11
CD48-203ENST00000613788 TRBV23OR9-2A0A075B6M9 112 aa14.35□□□□□ -0.11
CD48-203ENST00000613788 GFYI3L273 518 aa14.35□□□□□ -0.11
CD48-203ENST00000613788 BTN3A1O00481 513 aa14.35□□□□□ -0.11
CD48-203ENST00000613788 COPEO14579 308 aa14.35□□□□□ -0.11
CD48-203ENST00000613788 CATP04040 527 aaKnown RBP14.35□□□□□ -0.11
CD48-203ENST00000613788 MTHFD1P11586 935 aaKnown RBP14.35□□□□□ -0.11
CD48-203ENST00000613788 CCNFP41002 786 aa14.35□□□□□ -0.11
CD48-203ENST00000613788 SP140Q13342 867 aa14.35□□□□□ -0.11
CD48-203ENST00000613788 INAVAQ3KP66 663 aa14.35□□□□□ -0.11
CD48-203ENST00000613788 AASDHQ4L235 1098 aaPredicted RBP14.35□□□□□ -0.11
CD48-203ENST00000613788 ZCCHC8Q6NZY4 707 aaKnown RBP14.35□□□□□ -0.11
CD48-203ENST00000613788 UBE2R2Q712K3 238 aaPredicted RBP14.35□□□□□ -0.11
CD48-203ENST00000613788 CLEC14AQ86T13 490 aa14.35□□□□□ -0.11
CD48-203ENST00000613788 SLC9B2Q86UD5 537 aa14.35□□□□□ -0.11
CD48-203ENST00000613788 EXOC3L1Q86VI1 746 aa14.35□□□□□ -0.11
CD48-203ENST00000613788 SPNS2Q8IVW8 549 aa14.35□□□□□ -0.11
CD48-203ENST00000613788 TRIM48Q8IWZ4 208 aa14.35□□□□□ -0.11
CD48-203ENST00000613788 TBC1D21Q8IYX1 336 aa14.35□□□□□ -0.11
CD48-203ENST00000613788 NAGSQ8N159 534 aa14.35□□□□□ -0.11
CD48-203ENST00000613788 C4orf33Q8N1A6 199 aa14.35□□□□□ -0.11
CD48-203ENST00000613788 SFRP1Q8N474 314 aa14.35□□□□□ -0.11
CD48-203ENST00000613788 OR4C6Q8NH72 309 aa14.35□□□□□ -0.11
CD48-203ENST00000613788 STAG3L4Q8TBR4 150 aa14.35□□□□□ -0.11
CD48-203ENST00000613788 MAPK15Q8TD08 544 aa14.35□□□□□ -0.11
CD48-203ENST00000613788 FERD3LQ96RJ6 166 aa14.35□□□□□ -0.11
CD48-203ENST00000613788 TRIM54Q9BYV2 358 aa14.35□□□□□ -0.11
CD48-203ENST00000613788 TRIT1Q9H3H1 467 aaKnown RBP14.35□□□□□ -0.11
CD48-203ENST00000613788 TFB2MQ9H5Q4 396 aaKnown RBP14.35□□□□□ -0.11
CD48-203ENST00000613788 STN1Q9H668 368 aaKnown RBP14.35□□□□□ -0.11
CD48-203ENST00000613788 MVB12BQ9H7P6 319 aa14.35□□□□□ -0.11
CD48-203ENST00000613788 PARD6AQ9NPB6 346 aa14.35□□□□□ -0.11
CD48-203ENST00000613788 IGSF5Q9NSI5 407 aa14.35□□□□□ -0.11
CD48-203ENST00000613788 SCHIP1Q9P0W5 487 aaPredicted RBP14.35□□□□□ -0.11
CD48-203ENST00000613788 GRID1Q9ULK0 1009 aa14.35□□□□□ -0.11
CD48-203ENST00000613788 MYO15AQ9UKN7 3530 aa14.34□□□□□ -0.11
CD48-203ENST00000613788 DMDP11532 3685 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms