RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 TLCD2A6NGC4 264 aa15.7■□□□□ 0.1
TRIM28-213ENST00000598355 EFCAB7A8K855 629 aa15.7■□□□□ 0.1
TRIM28-213ENST00000598355 IQCF5A8MTL0 148 aa15.7■□□□□ 0.1
TRIM28-213ENST00000598355 SMAPO00193 183 aa15.7■□□□□ 0.1
TRIM28-213ENST00000598355 TTI1O43156 1089 aa15.7■□□□□ 0.1
TRIM28-213ENST00000598355 SLCO2B1O94956 709 aa15.7■□□□□ 0.1
TRIM28-213ENST00000598355 SEC31AO94979 1220 aaKnown RBP15.7■□□□□ 0.1
TRIM28-213ENST00000598355 LIPCP11150 499 aa15.7■□□□□ 0.1
TRIM28-213ENST00000598355 MAPK10P53779 464 aa15.7■□□□□ 0.1
TRIM28-213ENST00000598355 CBLBQ13191 982 aa15.7■□□□□ 0.1
TRIM28-213ENST00000598355 PLCL1Q15111 1095 aa15.7■□□□□ 0.1
TRIM28-213ENST00000598355 COL28A1Q2UY09 1125 aa15.7■□□□□ 0.1
TRIM28-213ENST00000598355 SNAP47Q5SQN1 464 aa15.7■□□□□ 0.1
TRIM28-213ENST00000598355 HIBCHQ6NVY1 386 aaPredicted RBP15.7■□□□□ 0.1
TRIM28-213ENST00000598355 CASC4Q6P4E1 433 aa15.7■□□□□ 0.1
TRIM28-213ENST00000598355 ZNF449Q6P9G9 518 aa15.7■□□□□ 0.1
TRIM28-213ENST00000598355 LRRC69Q6ZNQ3 347 aa15.7■□□□□ 0.1
TRIM28-213ENST00000598355 ZNF572Q7Z3I7 529 aaPredicted RBP15.7■□□□□ 0.1
TRIM28-213ENST00000598355 OOSP2Q86WS3 158 aa15.7■□□□□ 0.1
TRIM28-213ENST00000598355 LMNTD2Q8IXW0 634 aa15.7■□□□□ 0.1
TRIM28-213ENST00000598355 OR52E1Q8NGJ3 308 aa15.7■□□□□ 0.1
TRIM28-213ENST00000598355 SLC41A2Q96JW4 573 aa15.7■□□□□ 0.1
TRIM28-213ENST00000598355 TRIM51Q9BSJ1 452 aa15.7■□□□□ 0.1
TRIM28-213ENST00000598355 TSSK1BQ9BXA7 367 aa15.7■□□□□ 0.1
TRIM28-213ENST00000598355 SPRY4Q9C004 299 aa15.7■□□□□ 0.1
TRIM28-213ENST00000598355 KLHL3Q9UH77 587 aa15.7■□□□□ 0.1
TRIM28-213ENST00000598355 B3GALT1Q9Y5Z6 326 aa15.7■□□□□ 0.1
TRIM28-213ENST00000598355 SPTBP11277 2137 aa15.7■□□□□ 0.1
TRIM28-213ENST00000598355 A8MU76 341 aa15.69■□□□□ 0.1
TRIM28-213ENST00000598355 GOLGA8KD6RF30 607 aa15.69■□□□□ 0.1
TRIM28-213ENST00000598355 GOLGA8TH3BQL2 631 aa15.69■□□□□ 0.1
TRIM28-213ENST00000598355 KIF1CO43896 1103 aaKnown RBP15.69■□□□□ 0.1
TRIM28-213ENST00000598355 NDUFS3O75489 264 aa15.69■□□□□ 0.1
TRIM28-213ENST00000598355 ESR1P03372 595 aa15.69■□□□□ 0.1
TRIM28-213ENST00000598355 MSS51Q4VC12 460 aa15.69■□□□□ 0.1
TRIM28-213ENST00000598355 NEPROQ6NW34 567 aa15.69■□□□□ 0.1
TRIM28-213ENST00000598355 NAPRTQ6XQN6 538 aa15.69■□□□□ 0.1
TRIM28-213ENST00000598355 SYT10Q6XYQ8 523 aa15.69■□□□□ 0.1
TRIM28-213ENST00000598355 FAM129CQ86XR2 697 aa15.69■□□□□ 0.1
TRIM28-213ENST00000598355 KMT5CQ86Y97 462 aa15.69■□□□□ 0.1
TRIM28-213ENST00000598355 VRK3Q8IV63 474 aa15.69■□□□□ 0.1
TRIM28-213ENST00000598355 TBC1D21Q8IYX1 336 aa15.69■□□□□ 0.1
TRIM28-213ENST00000598355 OR5K2Q8NHB8 316 aa15.69■□□□□ 0.1
TRIM28-213ENST00000598355 SNRNP27Q8WVK2 155 aaKnown RBP15.69■□□□□ 0.1
TRIM28-213ENST00000598355 ASZ1Q8WWH4 475 aa15.69■□□□□ 0.1
TRIM28-213ENST00000598355 UBXN4Q92575 508 aa15.69■□□□□ 0.1
TRIM28-213ENST00000598355 STAMBPL1Q96FJ0 436 aa15.69■□□□□ 0.1
TRIM28-213ENST00000598355 TEFMQ96QE5 360 aaKnown RBP15.69■□□□□ 0.1
TRIM28-213ENST00000598355 PANX3Q96QZ0 392 aa15.69■□□□□ 0.1
TRIM28-213ENST00000598355 WDR83Q9BRX9 315 aaKnown RBP15.69■□□□□ 0.1
TRIM28-213ENST00000598355 PLAC1Q9HBJ0 212 aa15.69■□□□□ 0.1
TRIM28-213ENST00000598355 LATS2Q9NRM7 1088 aa15.69■□□□□ 0.1
TRIM28-213ENST00000598355 INTS10Q9NVR2 710 aaKnown RBP15.69■□□□□ 0.1
TRIM28-213ENST00000598355 IL1RAPL1Q9NZN1 696 aa15.69■□□□□ 0.1
TRIM28-213ENST00000598355 POMT2Q9UKY4 750 aa15.69■□□□□ 0.1
TRIM28-213ENST00000598355 FAM169AQ9Y6X4 670 aa15.69■□□□□ 0.1
TRIM28-213ENST00000598355 IGSF10Q6WRI0 2623 aa15.69■□□□□ 0.1
TRIM28-213ENST00000598355 IGHV5-51A0A0C4DH38 117 aa15.68■□□□□ 0.1
TRIM28-213ENST00000598355 AGRPO00253 132 aa15.68■□□□□ 0.1
TRIM28-213ENST00000598355 MATN2O00339 956 aa15.68■□□□□ 0.1
TRIM28-213ENST00000598355 S1PR4O95977 384 aa15.68■□□□□ 0.1
TRIM28-213ENST00000598355 TPBGLP0DKB5 382 aa15.68■□□□□ 0.1
TRIM28-213ENST00000598355 NELFEP18615 380 aaKnown RBP15.68■□□□□ 0.1
TRIM28-213ENST00000598355 PGAM1P18669 254 aa15.68■□□□□ 0.1
TRIM28-213ENST00000598355 PPM1FP49593 454 aaPredicted RBP15.68■□□□□ 0.1
TRIM28-213ENST00000598355 KPNA2P52292 529 aaKnown RBP15.68■□□□□ 0.1
TRIM28-213ENST00000598355 DHX9Q08211 1270 aaKnown RBP15.68■□□□□ 0.1
TRIM28-213ENST00000598355 CRYMQ14894 314 aa15.68■□□□□ 0.1
TRIM28-213ENST00000598355 LONRF1Q17RB8 773 aa15.68■□□□□ 0.1
TRIM28-213ENST00000598355 SYTL3Q4VX76 610 aa15.68■□□□□ 0.1
TRIM28-213ENST00000598355 DNAJC21Q5F1R6 531 aaKnown RBP15.68■□□□□ 0.1
TRIM28-213ENST00000598355 TMEM164Q5U3C3 297 aa15.68■□□□□ 0.1
TRIM28-213ENST00000598355 ANKS6Q68DC2 871 aa15.68■□□□□ 0.1
TRIM28-213ENST00000598355 ZNF470Q6ECI4 717 aa15.68■□□□□ 0.1
TRIM28-213ENST00000598355 IRGCQ6NXR0 463 aa15.68■□□□□ 0.1
TRIM28-213ENST00000598355 SDCCAG8Q86SQ7 713 aaPredicted RBP15.68■□□□□ 0.1
TRIM28-213ENST00000598355 KRT222Q8N1A0 295 aa15.68■□□□□ 0.1
TRIM28-213ENST00000598355 SPATA4Q8NEY3 305 aa15.68■□□□□ 0.1
TRIM28-213ENST00000598355 OR5AR1Q8NGP9 310 aa15.68■□□□□ 0.1
TRIM28-213ENST00000598355 HNRNPLLQ8WVV9 542 aaKnown RBP15.68■□□□□ 0.1
TRIM28-213ENST00000598355 CRELD1Q96HD1 420 aa15.68■□□□□ 0.1
TRIM28-213ENST00000598355 NAF1Q96HR8 494 aaKnown RBP15.68■□□□□ 0.1
TRIM28-213ENST00000598355 EBNA1BP2Q99848 306 aaKnown RBP15.68■□□□□ 0.1
TRIM28-213ENST00000598355 ZPBPQ9BS86 351 aa15.68■□□□□ 0.1
TRIM28-213ENST00000598355 NAT9Q9BTE0 207 aa15.68■□□□□ 0.1
TRIM28-213ENST00000598355 HGH1Q9BTY7 390 aa15.68■□□□□ 0.1
TRIM28-213ENST00000598355 MENTQ9BUN1 341 aa15.68■□□□□ 0.1
TRIM28-213ENST00000598355 ASPSCR1Q9BZE9 553 aa15.68■□□□□ 0.1
TRIM28-213ENST00000598355 PRORYQ9H606 182 aa15.68■□□□□ 0.1
TRIM28-213ENST00000598355 HRASLS2Q9NWW9 162 aa15.68■□□□□ 0.1
TRIM28-213ENST00000598355 SLC39A1Q9NY26 324 aa15.68■□□□□ 0.1
TRIM28-213ENST00000598355 ICKQ9UPZ9 632 aa15.68■□□□□ 0.1
TRIM28-213ENST00000598355 VPS9D1Q9Y2B5 631 aa15.68■□□□□ 0.1
TRIM28-213ENST00000598355 UBA6A0AVT1 1052 aaPredicted RBP15.67■□□□□ 0.1
TRIM28-213ENST00000598355 OR6C74A6NCV1 312 aa15.67■□□□□ 0.1
TRIM28-213ENST00000598355 H3BMM5 538 aa15.67■□□□□ 0.1
TRIM28-213ENST00000598355 BTN3A1O00481 513 aa15.67■□□□□ 0.1
TRIM28-213ENST00000598355 KPNA5O15131 536 aa15.67■□□□□ 0.1
TRIM28-213ENST00000598355 TTC4O95801 387 aa15.67■□□□□ 0.1
TRIM28-213ENST00000598355 APOA4P06727 396 aa15.67■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms