RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 ISCUQ9H1K1 167 aa9.81□□□□□ -0.84
TRIM28-210ENST00000597618 SLC25A51Q9H1U9 297 aa9.81□□□□□ -0.84
TRIM28-210ENST00000597618 TRABDQ9H4I3 376 aa9.81□□□□□ -0.84
TRIM28-210ENST00000597618 EPS8L2Q9H6S3 715 aa9.81□□□□□ -0.84
TRIM28-210ENST00000597618 SMOXQ9NWM0 555 aa9.81□□□□□ -0.84
TRIM28-210ENST00000597618 ANAPC7Q9UJX3 599 aa9.81□□□□□ -0.84
TRIM28-210ENST00000597618 FBXL4Q9UKA2 621 aa9.81□□□□□ -0.84
TRIM28-210ENST00000597618 SPO11Q9Y5K1 396 aa9.81□□□□□ -0.84
TRIM28-210ENST00000597618 NIPBLQ6KC79 2804 aaeCLIP9.8□□□□□ -0.84
TRIM28-210ENST00000597618 SPG11Q96JI7 2443 aa9.8□□□□□ -0.84
TRIM28-210ENST00000597618 GLYATL1P3A0A0U1RQE8 302 aa9.8□□□□□ -0.84
TRIM28-210ENST00000597618 LRRC10BA6NIK2 292 aa9.8□□□□□ -0.84
TRIM28-210ENST00000597618 MASP2O00187 686 aa9.8□□□□□ -0.84
TRIM28-210ENST00000597618 BTN3A1O00481 513 aa9.8□□□□□ -0.84
TRIM28-210ENST00000597618 OR2B3O76000 313 aa9.8□□□□□ -0.84
TRIM28-210ENST00000597618 MT-CYBP00156 380 aaPredicted RBP9.8□□□□□ -0.84
TRIM28-210ENST00000597618 UMODP07911 640 aa9.8□□□□□ -0.84
TRIM28-210ENST00000597618 SNRPB2P08579 225 aaKnown RBP9.8□□□□□ -0.84
TRIM28-210ENST00000597618 MSH3P20585 1137 aa9.8□□□□□ -0.84
TRIM28-210ENST00000597618 AKT1P31749 480 aa9.8□□□□□ -0.84
TRIM28-210ENST00000597618 GJC1P36383 396 aa9.8□□□□□ -0.84
TRIM28-210ENST00000597618 PRKCIP41743 596 aa9.8□□□□□ -0.84
TRIM28-210ENST00000597618 ITGA9Q13797 1035 aa9.8□□□□□ -0.84
TRIM28-210ENST00000597618 TESK1Q15569 626 aa9.8□□□□□ -0.84
TRIM28-210ENST00000597618 ZNF630Q2M218 657 aaPredicted RBP9.8□□□□□ -0.84
TRIM28-210ENST00000597618 VWA2Q5GFL6 755 aa9.8□□□□□ -0.84
TRIM28-210ENST00000597618 C1orf189Q5VU69 101 aa9.8□□□□□ -0.84
TRIM28-210ENST00000597618 MRPL14Q6P1L8 145 aaKnown RBP9.8□□□□□ -0.84
TRIM28-210ENST00000597618 MTFR2Q6P444 385 aa9.8□□□□□ -0.84
TRIM28-210ENST00000597618 RPTNQ6XPR3 784 aa9.8□□□□□ -0.84
TRIM28-210ENST00000597618 SPNS3Q6ZMD2 512 aa9.8□□□□□ -0.84
TRIM28-210ENST00000597618 ZNF808Q8N4W9 903 aaPredicted RBP9.8□□□□□ -0.84
TRIM28-210ENST00000597618 PQLC3Q8N755 202 aa9.8□□□□□ -0.84
TRIM28-210ENST00000597618 TADA1Q96BN2 335 aa9.8□□□□□ -0.84
TRIM28-210ENST00000597618 FAF2Q96CS3 445 aa9.8□□□□□ -0.84
TRIM28-210ENST00000597618 BTBD6Q96KE9 485 aa9.8□□□□□ -0.84
TRIM28-210ENST00000597618 RMDN2Q96LZ7 410 aa9.8□□□□□ -0.84
TRIM28-210ENST00000597618 SLC6A20Q9NP91 592 aa9.8□□□□□ -0.84
TRIM28-210ENST00000597618 TXLNGQ9NUQ3 528 aa9.8□□□□□ -0.84
TRIM28-210ENST00000597618 FAM8A1Q9UBU6 413 aa9.8□□□□□ -0.84
TRIM28-210ENST00000597618 CDYLQ9Y232 598 aa9.8□□□□□ -0.84
TRIM28-210ENST00000597618 MED13LQ71F56 2210 aa9.79□□□□□ -0.84
TRIM28-210ENST00000597618 ZGRF1Q86YA3 2104 aa9.79□□□□□ -0.84
TRIM28-210ENST00000597618 NAV3Q8IVL0 2385 aa9.79□□□□□ -0.84
TRIM28-210ENST00000597618 C2orf74A8MZ97 194 aa9.79□□□□□ -0.84
TRIM28-210ENST00000597618 MYO1FO00160 1098 aa9.79□□□□□ -0.84
TRIM28-210ENST00000597618 BTN3A3O00478 584 aa9.79□□□□□ -0.84
TRIM28-210ENST00000597618 PCDH17O14917 1159 aa9.79□□□□□ -0.84
TRIM28-210ENST00000597618 ZSCAN9O15535 394 aaPredicted RBP9.79□□□□□ -0.84
TRIM28-210ENST00000597618 GPR39O43194 453 aa9.79□□□□□ -0.84
TRIM28-210ENST00000597618 UGT1A9O60656 530 aa9.79□□□□□ -0.84
TRIM28-210ENST00000597618 CNOT3O75175 753 aaKnown RBP9.79□□□□□ -0.84
TRIM28-210ENST00000597618 PVRP15151 417 aa9.79□□□□□ -0.84
TRIM28-210ENST00000597618 UGT1A6P19224 532 aa9.79□□□□□ -0.84
TRIM28-210ENST00000597618 CDK11BP21127 795 aaKnown RBP9.79□□□□□ -0.84
TRIM28-210ENST00000597618 UGT1A1P22309 533 aa9.79□□□□□ -0.84
TRIM28-210ENST00000597618 UGT1A4P22310 534 aa9.79□□□□□ -0.84
TRIM28-210ENST00000597618 MMP11P24347 488 aa9.79□□□□□ -0.84
TRIM28-210ENST00000597618 SSTR2P30874 369 aa9.79□□□□□ -0.84
TRIM28-210ENST00000597618 TNNT3P45378 269 aaPredicted RBP9.79□□□□□ -0.84
TRIM28-210ENST00000597618 MYL5Q02045 173 aa9.79□□□□□ -0.84
TRIM28-210ENST00000597618 KLHL30Q0D2K2 578 aa9.79□□□□□ -0.84
TRIM28-210ENST00000597618 AP1B1Q10567 949 aa9.79□□□□□ -0.84
TRIM28-210ENST00000597618 SLC10A2Q12908 348 aaPredicted RBP9.79□□□□□ -0.84
TRIM28-210ENST00000597618 PRKD1Q15139 912 aaPredicted RBP9.79□□□□□ -0.84
TRIM28-210ENST00000597618 NKAIN1Q4KMZ8 207 aa9.79□□□□□ -0.84
TRIM28-210ENST00000597618 BCL7AQ4VC05 210 aa9.79□□□□□ -0.84
TRIM28-210ENST00000597618 RPUSD3Q6P087 351 aaKnown RBP9.79□□□□□ -0.84
TRIM28-210ENST00000597618 DET1Q7L5Y6 550 aa9.79□□□□□ -0.84
TRIM28-210ENST00000597618 MRGPRGQ86SM5 289 aa9.79□□□□□ -0.84
TRIM28-210ENST00000597618 HOOK3Q86VS8 718 aa9.79□□□□□ -0.84
TRIM28-210ENST00000597618 C19orf47Q8N9M1 422 aaKnown RBP9.79□□□□□ -0.84
TRIM28-210ENST00000597618 TBRG4Q969Z0 631 aaKnown RBP eCLIP9.79□□□□□ -0.84
TRIM28-210ENST00000597618 POM121Q96HA1 1249 aa9.79□□□□□ -0.84
TRIM28-210ENST00000597618 CCDC120Q96HB5 630 aa9.79□□□□□ -0.84
TRIM28-210ENST00000597618 TRIM56Q9BRZ2 755 aaKnown RBP9.79□□□□□ -0.84
TRIM28-210ENST00000597618 CCM2Q9BSQ5 444 aa9.79□□□□□ -0.84
TRIM28-210ENST00000597618 CEP41Q9BYV8 373 aa9.79□□□□□ -0.84
TRIM28-210ENST00000597618 KLHL25Q9H0H3 589 aa9.79□□□□□ -0.84
TRIM28-210ENST00000597618 UGT1A7Q9HAW7 530 aa9.79□□□□□ -0.84
TRIM28-210ENST00000597618 UGT1A10Q9HAW8 530 aa9.79□□□□□ -0.84
TRIM28-210ENST00000597618 UGT1A8Q9HAW9 530 aa9.79□□□□□ -0.84
TRIM28-210ENST00000597618 AIPL1Q9NZN9 384 aa9.79□□□□□ -0.84
TRIM28-210ENST00000597618 PCM1Q15154 2024 aa9.78□□□□□ -0.84
TRIM28-210ENST00000597618 MDC1Q14676 2089 aaKnown RBP9.78□□□□□ -0.84
TRIM28-210ENST00000597618 TRGV8A0A0C4DH27 118 aa9.78□□□□□ -0.84
TRIM28-210ENST00000597618 H3BMH7 237 aa9.78□□□□□ -0.84
TRIM28-210ENST00000597618 PMPCBO75439 489 aa9.78□□□□□ -0.84
TRIM28-210ENST00000597618 POLBP06746 335 aa9.78□□□□□ -0.84
TRIM28-210ENST00000597618 ATXN8OSP0DMR3 200 aa9.78□□□□□ -0.84
TRIM28-210ENST00000597618 CAPN3P20807 821 aa9.78□□□□□ -0.84
TRIM28-210ENST00000597618 TDGF1P3P51864 188 aa9.78□□□□□ -0.84
TRIM28-210ENST00000597618 KCNK10P57789 538 aa9.78□□□□□ -0.84
TRIM28-210ENST00000597618 FOXL2P58012 376 aa9.78□□□□□ -0.84
TRIM28-210ENST00000597618 SLC9A5Q14940 896 aa9.78□□□□□ -0.84
TRIM28-210ENST00000597618 INAQ16352 499 aa9.78□□□□□ -0.84
TRIM28-210ENST00000597618 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.78□□□□□ -0.84
TRIM28-210ENST00000597618 ATP13A4Q4VNC1 1196 aa9.78□□□□□ -0.84
TRIM28-210ENST00000597618 E4F1Q66K89 784 aaPredicted RBP9.78□□□□□ -0.84
TRIM28-210ENST00000597618 ZNF324BQ6AW86 544 aaPredicted RBP9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms