RNA–Protein interactions for RNA: ENST00000593223.1

SMAD4-216, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 568 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-216ENST00000593223 SLC22A3O75751 556 aa4.8□□□□□ -1.64
SMAD4-216ENST00000593223 PALMO75781 387 aa4.8□□□□□ -1.64
SMAD4-216ENST00000593223 SCGB1D1O95968 90 aa4.8□□□□□ -1.64
SMAD4-216ENST00000593223 QDPRP09417 244 aa4.8□□□□□ -1.64
SMAD4-216ENST00000593223 DPEP1P16444 411 aa4.8□□□□□ -1.64
SMAD4-216ENST00000593223 HLA-DPA1P20036 260 aa4.8□□□□□ -1.64
SMAD4-216ENST00000593223 CCNCP24863 283 aa4.8□□□□□ -1.64
SMAD4-216ENST00000593223 HOXD10P28358 340 aa4.8□□□□□ -1.64
SMAD4-216ENST00000593223 GNL1P36915 607 aaPredicted RBP4.8□□□□□ -1.64
SMAD4-216ENST00000593223 HADHAP40939 763 aa4.8□□□□□ -1.64
SMAD4-216ENST00000593223 CLCN3P51790 818 aa4.8□□□□□ -1.64
SMAD4-216ENST00000593223 RBP5P82980 135 aa4.8□□□□□ -1.64
SMAD4-216ENST00000593223 IL1RL1Q01638 556 aa4.8□□□□□ -1.64
SMAD4-216ENST00000593223 NIPAL4Q0D2K0 466 aa4.8□□□□□ -1.64
SMAD4-216ENST00000593223 MAMLD1Q13495 774 aa4.8□□□□□ -1.64
SMAD4-216ENST00000593223 ACVR2BQ13705 512 aa4.8□□□□□ -1.64
SMAD4-216ENST00000593223 PPA1Q15181 289 aa4.8□□□□□ -1.64
SMAD4-216ENST00000593223 ZSCAN23Q3MJ62 389 aa4.8□□□□□ -1.64
SMAD4-216ENST00000593223 CDONQ4KMG0 1287 aa4.8□□□□□ -1.64
SMAD4-216ENST00000593223 IRAK1BP1Q5VVH5 260 aa4.8□□□□□ -1.64
SMAD4-216ENST00000593223 RAB12Q6IQ22 244 aa4.8□□□□□ -1.64
SMAD4-216ENST00000593223 NAA16Q6N069 864 aaPredicted RBP4.8□□□□□ -1.64
SMAD4-216ENST00000593223 NCEH1Q6PIU2 408 aa4.8□□□□□ -1.64
SMAD4-216ENST00000593223 C18orf65Q6ZTR6 163 aa4.8□□□□□ -1.64
SMAD4-216ENST00000593223 FAM47EQ6ZV65 393 aa4.8□□□□□ -1.64
SMAD4-216ENST00000593223 PPP1R42Q7Z4L9 355 aa4.8□□□□□ -1.64
SMAD4-216ENST00000593223 DZIP1Q86YF9 867 aaKnown RBP4.8□□□□□ -1.64
SMAD4-216ENST00000593223 ARHGAP12Q8IWW6 846 aa4.8□□□□□ -1.64
SMAD4-216ENST00000593223 CHERPQ8IWX8 916 aaKnown RBP4.8□□□□□ -1.64
SMAD4-216ENST00000593223 PCDH20Q8N6Y1 951 aaKnown RBP4.8□□□□□ -1.64
SMAD4-216ENST00000593223 ZNF540Q8NDQ6 660 aa4.8□□□□□ -1.64
SMAD4-216ENST00000593223 OR2AK2Q8NG84 335 aa4.8□□□□□ -1.64
SMAD4-216ENST00000593223 SECTM1Q8WVN6 248 aa4.8□□□□□ -1.64
SMAD4-216ENST00000593223 SGCDQ92629 289 aa4.8□□□□□ -1.64
SMAD4-216ENST00000593223 ZNF75CPQ92670 426 aaPredicted RBP4.8□□□□□ -1.64
SMAD4-216ENST00000593223 ZKSCAN4Q969J2 545 aaPredicted RBP4.8□□□□□ -1.64
SMAD4-216ENST00000593223 CAPNS2Q96L46 248 aa4.8□□□□□ -1.64
SMAD4-216ENST00000593223 AGAP3Q96P47 875 aa4.8□□□□□ -1.64
SMAD4-216ENST00000593223 HGH1Q9BTY7 390 aa4.8□□□□□ -1.64
SMAD4-216ENST00000593223 SIL1Q9H173 461 aa4.8□□□□□ -1.64
SMAD4-216ENST00000593223 SH2D4AQ9H788 454 aa4.8□□□□□ -1.64
SMAD4-216ENST00000593223 PCDH9Q9HC56 1237 aa4.8□□□□□ -1.64
SMAD4-216ENST00000593223 AIPL1Q9NZN9 384 aa4.8□□□□□ -1.64
SMAD4-216ENST00000593223 CORO1CQ9ULV4 474 aaPredicted RBP4.8□□□□□ -1.64
SMAD4-216ENST00000593223 R3HDM2Q9Y2K5 976 aaKnown RBP4.8□□□□□ -1.64
SMAD4-216ENST00000593223 AMDHD2Q9Y303 409 aa4.8□□□□□ -1.64
SMAD4-216ENST00000593223 ADAM18Q9Y3Q7 739 aa4.8□□□□□ -1.64
SMAD4-216ENST00000593223 N4BP2Q86UW6 1770 aaPredicted RBP4.8□□□□□ -1.64
SMAD4-216ENST00000593223 CRB1P82279 1406 aa4.8□□□□□ -1.64
SMAD4-216ENST00000593223 DOCK7Q96N67 2140 aa4.79□□□□□ -1.64
SMAD4-216ENST00000593223 BTAF1O14981 1849 aa4.79□□□□□ -1.64
SMAD4-216ENST00000593223 IGHV4OR15-8A0A075B7B6 117 aa4.79□□□□□ -1.64
SMAD4-216ENST00000593223 A0A1W2PQF6 199 aa4.79□□□□□ -1.64
SMAD4-216ENST00000593223 LIPT2A6NK58 231 aa4.79□□□□□ -1.64
SMAD4-216ENST00000593223 KRTAP29-1A8MX34 341 aaPredicted RBP4.79□□□□□ -1.64
SMAD4-216ENST00000593223 H3BQ06 376 aaPredicted RBP4.79□□□□□ -1.64
SMAD4-216ENST00000593223 DDX39AO00148 427 aaKnown RBP4.79□□□□□ -1.64
SMAD4-216ENST00000593223 PSMA7O14818 248 aa4.79□□□□□ -1.64
SMAD4-216ENST00000593223 NEMFO60524 1076 aa4.79□□□□□ -1.64
SMAD4-216ENST00000593223 TSPAN9O75954 239 aa4.79□□□□□ -1.64
SMAD4-216ENST00000593223 NR2F1P10589 423 aa4.79□□□□□ -1.64
SMAD4-216ENST00000593223 PORP16435 677 aaPredicted RBP4.79□□□□□ -1.64
SMAD4-216ENST00000593223 HOXC9P31274 260 aa4.79□□□□□ -1.64
SMAD4-216ENST00000593223 STIP1P31948 543 aaKnown RBP4.79□□□□□ -1.64
SMAD4-216ENST00000593223 IL15P40933 162 aaPredicted RBP4.79□□□□□ -1.64
SMAD4-216ENST00000593223 PRCPP42785 496 aa4.79□□□□□ -1.64
SMAD4-216ENST00000593223 GALCP54803 685 aa4.79□□□□□ -1.64
SMAD4-216ENST00000593223 ERVFC1-1P60608 527 aa4.79□□□□□ -1.64
SMAD4-216ENST00000593223 POU3F1Q03052 451 aaPredicted RBP4.79□□□□□ -1.64
SMAD4-216ENST00000593223 WSCD2Q2TBF2 565 aa4.79□□□□□ -1.64
SMAD4-216ENST00000593223 DCST1Q5T197 706 aa4.79□□□□□ -1.64
SMAD4-216ENST00000593223 FRG2Q64ET8 278 aa4.79□□□□□ -1.64
SMAD4-216ENST00000593223 IL27RAQ6UWB1 636 aa4.79□□□□□ -1.64
SMAD4-216ENST00000593223 IKBIPQ70UQ0 350 aa4.79□□□□□ -1.64
SMAD4-216ENST00000593223 NUP54Q7Z3B4 507 aa4.79□□□□□ -1.64
SMAD4-216ENST00000593223 DNAJB7Q7Z6W7 309 aaPredicted RBP4.79□□□□□ -1.64
SMAD4-216ENST00000593223 EXOC3L1Q86VI1 746 aa4.79□□□□□ -1.64
SMAD4-216ENST00000593223 NR2C2APQ86WQ0 139 aa4.79□□□□□ -1.64
SMAD4-216ENST00000593223 ODF3L1Q8IXM7 274 aa4.79□□□□□ -1.64
SMAD4-216ENST00000593223 CCDC170Q8IYT3 715 aa4.79□□□□□ -1.64
SMAD4-216ENST00000593223 ZNF34Q8IZ26 560 aa4.79□□□□□ -1.64
SMAD4-216ENST00000593223 NGEFQ8N5V2 710 aa4.79□□□□□ -1.64
SMAD4-216ENST00000593223 TMCO5AQ8N6Q1 288 aa4.79□□□□□ -1.64
SMAD4-216ENST00000593223 OR52K2Q8NGK3 314 aa4.79□□□□□ -1.64
SMAD4-216ENST00000593223 GDAP1Q8TB36 358 aa4.79□□□□□ -1.64
SMAD4-216ENST00000593223 HMGCLL1Q8TB92 370 aa4.79□□□□□ -1.64
SMAD4-216ENST00000593223 APBB2Q92870 758 aa4.79□□□□□ -1.64
SMAD4-216ENST00000593223 GRAMD2BQ96HH9 432 aa4.79□□□□□ -1.64
SMAD4-216ENST00000593223 FEM1CQ96JP0 617 aa4.79□□□□□ -1.64
SMAD4-216ENST00000593223 PPP1R13BQ96KQ4 1090 aa4.79□□□□□ -1.64
SMAD4-216ENST00000593223 C16orf45Q96MC5 204 aaPredicted RBP4.79□□□□□ -1.64
SMAD4-216ENST00000593223 NEK1Q96PY6 1258 aa4.79□□□□□ -1.64
SMAD4-216ENST00000593223 NCOR1P1Q9H4R4 102 aa4.79□□□□□ -1.64
SMAD4-216ENST00000593223 UBTD1Q9HAC8 227 aa4.79□□□□□ -1.64
SMAD4-216ENST00000593223 SEBOXQ9HB31 216 aaPredicted RBP4.79□□□□□ -1.64
SMAD4-216ENST00000593223 ZNHIT6Q9NWK9 470 aaKnown RBP4.79□□□□□ -1.64
SMAD4-216ENST00000593223 ADPRHL2Q9NX46 363 aa4.79□□□□□ -1.64
SMAD4-216ENST00000593223 CWC15Q9P013 229 aaKnown RBP4.79□□□□□ -1.64
SMAD4-216ENST00000593223 STK26Q9P289 416 aa4.79□□□□□ -1.64
SMAD4-216ENST00000593223 EXTL2Q9UBQ6 330 aa4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms