RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 DNASE2BQ8WZ79 361 aa24.54■■□□□ 1.52
SHMT1-207ENST00000580002 OR2M4Q96R27 311 aa24.54■■□□□ 1.52
SHMT1-207ENST00000580002 NRTNQ99748 197 aa24.54■■□□□ 1.52
SHMT1-207ENST00000580002 RMI1Q9H9A7 625 aa24.54■■□□□ 1.52
SHMT1-207ENST00000580002 PRR19A6NJB7 356 aa24.54■■□□□ 1.52
SHMT1-207ENST00000580002 GFYI3L273 518 aa24.54■■□□□ 1.52
SHMT1-207ENST00000580002 EML2O95834 649 aa24.54■■□□□ 1.52
SHMT1-207ENST00000580002 CELA2BP08218 269 aaPredicted RBP24.54■■□□□ 1.52
SHMT1-207ENST00000580002 KELP23276 732 aa24.54■■□□□ 1.52
SHMT1-207ENST00000580002 ACADLP28330 430 aa24.54■■□□□ 1.52
SHMT1-207ENST00000580002 CSNK1EP49674 416 aaKnown RBP24.54■■□□□ 1.52
SHMT1-207ENST00000580002 NAGLUP54802 743 aa24.54■■□□□ 1.52
SHMT1-207ENST00000580002 CTBSQ01459 385 aa24.54■■□□□ 1.52
SHMT1-207ENST00000580002 EEF1AKMT2Q5JPI9 291 aaKnown RBP24.54■■□□□ 1.52
SHMT1-207ENST00000580002 LMNTD1Q8N9Z9 388 aa24.54■■□□□ 1.52
SHMT1-207ENST00000580002 LRRC8CQ8TDW0 803 aa24.54■■□□□ 1.52
SHMT1-207ENST00000580002 TMEM237Q96Q45 408 aa24.54■■□□□ 1.52
SHMT1-207ENST00000580002 ZDHHC5Q9C0B5 715 aa24.54■■□□□ 1.52
SHMT1-207ENST00000580002 C11orf16Q9NQ32 467 aa24.54■■□□□ 1.52
SHMT1-207ENST00000580002 TRIM13O60858 407 aa24.53■■□□□ 1.52
SHMT1-207ENST00000580002 PRKAA2P54646 552 aa24.53■■□□□ 1.52
SHMT1-207ENST00000580002 RACK1P63244 317 aaKnown RBP24.53■■□□□ 1.52
SHMT1-207ENST00000580002 ZXDCQ2QGD7 858 aaPredicted RBP24.53■■□□□ 1.52
SHMT1-207ENST00000580002 BMP8AQ7Z5Y6 402 aa24.53■■□□□ 1.52
SHMT1-207ENST00000580002 GAB3Q8WWW8 586 aa24.53■■□□□ 1.52
SHMT1-207ENST00000580002 WWP1Q9H0M0 922 aa24.53■■□□□ 1.52
SHMT1-207ENST00000580002 PRDM8Q9NQV8 689 aa24.53■■□□□ 1.52
SHMT1-207ENST00000580002 TMEM74BQ9NUR3 256 aa24.53■■□□□ 1.52
SHMT1-207ENST00000580002 CD274Q9NZQ7 290 aa24.53■■□□□ 1.52
SHMT1-207ENST00000580002 OARD1Q9Y530 152 aa24.53■■□□□ 1.52
SHMT1-207ENST00000580002 LAMA1P25391 3075 aa24.52■■□□□ 1.52
SHMT1-207ENST00000580002 ARHGEF33A8MVX0 844 aa24.52■■□□□ 1.52
SHMT1-207ENST00000580002 EIF3FO00303 357 aaPredicted RBP24.52■■□□□ 1.52
SHMT1-207ENST00000580002 TNFRSF10CO14798 259 aa24.52■■□□□ 1.52
SHMT1-207ENST00000580002 SNX2O60749 519 aa24.52■■□□□ 1.52
SHMT1-207ENST00000580002 IPO13O94829 963 aaKnown RBP24.52■■□□□ 1.52
SHMT1-207ENST00000580002 TPBGLP0DKB5 382 aa24.52■■□□□ 1.52
SHMT1-207ENST00000580002 GFAPP14136 432 aa24.52■■□□□ 1.52
SHMT1-207ENST00000580002 DHPSP49366 369 aaPredicted RBP24.52■■□□□ 1.52
SHMT1-207ENST00000580002 CLCNKAP51800 687 aa24.52■■□□□ 1.52
SHMT1-207ENST00000580002 LIPMQ5VYY2 423 aa24.52■■□□□ 1.52
SHMT1-207ENST00000580002 NEK10Q6ZWH5 1172 aa24.52■■□□□ 1.52
SHMT1-207ENST00000580002 LPCAT2Q7L5N7 544 aa24.52■■□□□ 1.52
SHMT1-207ENST00000580002 ADAMTSL2Q86TH1 951 aa24.52■■□□□ 1.52
SHMT1-207ENST00000580002 NRROSQ86YC3 692 aa24.52■■□□□ 1.52
SHMT1-207ENST00000580002 CCNYL1Q8N7R7 359 aa24.52■■□□□ 1.52
SHMT1-207ENST00000580002 MFSD2AQ8NA29 543 aa24.52■■□□□ 1.52
SHMT1-207ENST00000580002 RMDN2Q96LZ7 410 aa24.52■■□□□ 1.52
SHMT1-207ENST00000580002 TIMM29Q9BSF4 260 aa24.52■■□□□ 1.52
SHMT1-207ENST00000580002 SLC12A9Q9BXP2 914 aa24.52■■□□□ 1.52
SHMT1-207ENST00000580002 SCHIP1Q9P0W5 487 aaPredicted RBP24.52■■□□□ 1.52
SHMT1-207ENST00000580002 PRAMEF33A0A0G2JMD5 474 aa24.52■■□□□ 1.52
SHMT1-207ENST00000580002 TAPBPO15533 448 aa24.52■■□□□ 1.52
SHMT1-207ENST00000580002 FFAR2O15552 330 aa24.52■■□□□ 1.52
SHMT1-207ENST00000580002 VIMP08670 466 aaKnown RBP24.52■■□□□ 1.52
SHMT1-207ENST00000580002 TSPAN8P19075 237 aa24.52■■□□□ 1.52
SHMT1-207ENST00000580002 DUS1LQ6P1R4 473 aaKnown RBP24.52■■□□□ 1.52
SHMT1-207ENST00000580002 FRA10AC1Q70Z53 315 aa24.52■■□□□ 1.52
SHMT1-207ENST00000580002 TLR4O00206 839 aa24.51■■□□□ 1.51
SHMT1-207ENST00000580002 TOR1BO14657 336 aa24.51■■□□□ 1.51
SHMT1-207ENST00000580002 SMIM24O75264 130 aa24.51■■□□□ 1.51
SHMT1-207ENST00000580002 PSIP1O75475 530 aaKnown RBP24.51■■□□□ 1.51
SHMT1-207ENST00000580002 RPIAP49247 311 aa24.51■■□□□ 1.51
SHMT1-207ENST00000580002 DMPKQ09013 629 aa24.51■■□□□ 1.51
SHMT1-207ENST00000580002 C1orf61Q13536 156 aa24.51■■□□□ 1.51
SHMT1-207ENST00000580002 CLCA4Q14CN2 919 aa24.51■■□□□ 1.51
SHMT1-207ENST00000580002 PLK5Q496M5 336 aa24.51■■□□□ 1.51
SHMT1-207ENST00000580002 UNC50Q53HI1 259 aa24.51■■□□□ 1.51
SHMT1-207ENST00000580002 PMS2CLQ68D20 193 aa24.51■■□□□ 1.51
SHMT1-207ENST00000580002 FBXO39Q8N4B4 442 aa24.51■■□□□ 1.51
SHMT1-207ENST00000580002 PPP1R14CQ8TAE6 165 aa24.51■■□□□ 1.51
SHMT1-207ENST00000580002 NSUN5Q96P11 429 aaKnown RBP24.51■■□□□ 1.51
SHMT1-207ENST00000580002 SHCBP1LQ9BZQ2 653 aa24.51■■□□□ 1.51
SHMT1-207ENST00000580002 FAM107BQ9H098 131 aa24.51■■□□□ 1.51
SHMT1-207ENST00000580002 FGFR1OP2Q9NVK5 253 aa24.51■■□□□ 1.51
SHMT1-207ENST00000580002 SPAG17Q6Q759 2223 aa24.5■■□□□ 1.51
SHMT1-207ENST00000580002 PPP6CO00743 305 aa24.5■■□□□ 1.51
SHMT1-207ENST00000580002 KLK8O60259 260 aa24.5■■□□□ 1.51
SHMT1-207ENST00000580002 GSTM1P09488 218 aa24.5■■□□□ 1.51
SHMT1-207ENST00000580002 GSTM4Q03013 218 aa24.5■■□□□ 1.51
SHMT1-207ENST00000580002 STX3Q13277 289 aa24.5■■□□□ 1.51
SHMT1-207ENST00000580002 SLC30A9Q6PML9 568 aa24.5■■□□□ 1.51
SHMT1-207ENST00000580002 SFTPA2Q8IWL1 248 aa24.5■■□□□ 1.51
SHMT1-207ENST00000580002 INSM2Q96T92 566 aaPredicted RBP24.5■■□□□ 1.51
SHMT1-207ENST00000580002 DPEP2Q9H4A9 486 aa24.5■■□□□ 1.51
SHMT1-207ENST00000580002 PARVBQ9HBI1 364 aa24.5■■□□□ 1.51
SHMT1-207ENST00000580002 TBC1D29Q9UFV1 150 aa24.5■■□□□ 1.51
SHMT1-207ENST00000580002 MID2Q9UJV3 735 aa24.5■■□□□ 1.51
SHMT1-207ENST00000580002 FBXO4Q9UKT5 387 aa24.5■■□□□ 1.51
SHMT1-207ENST00000580002 SERPINE1P05121 402 aa24.49■■□□□ 1.51
SHMT1-207ENST00000580002 C8GP07360 202 aa24.49■■□□□ 1.51
SHMT1-207ENST00000580002 CHRNGP07510 517 aa24.49■■□□□ 1.51
SHMT1-207ENST00000580002 SP9P0CG40 484 aa24.49■■□□□ 1.51
SHMT1-207ENST00000580002 GDF5P43026 501 aa24.49■■□□□ 1.51
SHMT1-207ENST00000580002 PTK2BQ14289 1009 aa24.49■■□□□ 1.51
SHMT1-207ENST00000580002 RGS9BPQ6ZS82 235 aa24.49■■□□□ 1.51
SHMT1-207ENST00000580002 OR5AR1Q8NGP9 310 aa24.49■■□□□ 1.51
SHMT1-207ENST00000580002 THOC1Q96FV9 657 aaKnown RBP24.49■■□□□ 1.51
SHMT1-207ENST00000580002 DGKBQ9Y6T7 804 aa24.49■■□□□ 1.51
SHMT1-207ENST00000580002 LRP4O75096 1905 aa24.49■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms