RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 WTAPQ15007 396 aa4.86□□□□□ -1.63
NUP88-213ENST00000576862 MRGPRG-AS1Q2M3A8 158 aa4.86□□□□□ -1.63
NUP88-213ENST00000576862 ADALQ6DHV7 355 aa4.86□□□□□ -1.63
NUP88-213ENST00000576862 RBMS3Q6XE24 437 aaKnown RBP4.86□□□□□ -1.63
NUP88-213ENST00000576862 LDB1Q86U70 411 aaPredicted RBP4.86□□□□□ -1.63
NUP88-213ENST00000576862 GRAPLQ8TC17 118 aaPredicted RBP4.86□□□□□ -1.63
NUP88-213ENST00000576862 DAZLQ92904 295 aaKnown RBP4.86□□□□□ -1.63
NUP88-213ENST00000576862 F2RL3Q96RI0 385 aa4.86□□□□□ -1.63
NUP88-213ENST00000576862 C16orf70Q9BSU1 422 aa4.86□□□□□ -1.63
NUP88-213ENST00000576862 KCNK15Q9H427 330 aa4.86□□□□□ -1.63
NUP88-213ENST00000576862 BICC1Q9H694 974 aaKnown RBP4.86□□□□□ -1.63
NUP88-213ENST00000576862 HHATLQ9HCP6 504 aa4.86□□□□□ -1.63
NUP88-213ENST00000576862 RHCGQ9UBD6 479 aa4.86□□□□□ -1.63
NUP88-213ENST00000576862 HACL1Q9UJ83 578 aa4.86□□□□□ -1.63
NUP88-213ENST00000576862 ZNF148Q9UQR1 794 aa4.86□□□□□ -1.63
NUP88-213ENST00000576862 PTRH2Q9Y3E5 179 aaKnown RBP4.86□□□□□ -1.63
NUP88-213ENST00000576862 MIA2Q96PC5 1412 aa4.86□□□□□ -1.63
NUP88-213ENST00000576862 DUXAA6NLW8 204 aa4.85□□□□□ -1.63
NUP88-213ENST00000576862 ENTPD3O75355 529 aa4.85□□□□□ -1.63
NUP88-213ENST00000576862 IGHV4-38-2P0DP08 117 aa4.85□□□□□ -1.63
NUP88-213ENST00000576862 ERVK-10P10266 1014 aa4.85□□□□□ -1.63
NUP88-213ENST00000576862 SPATA1Q5VX52 437 aa4.85□□□□□ -1.63
NUP88-213ENST00000576862 KRT79Q5XKE5 535 aa4.85□□□□□ -1.63
NUP88-213ENST00000576862 HAUS6Q7Z4H7 955 aa4.85□□□□□ -1.63
NUP88-213ENST00000576862 GPALPP1Q8IXQ4 340 aa4.85□□□□□ -1.63
NUP88-213ENST00000576862 OR2T12Q8NG77 320 aa4.85□□□□□ -1.63
NUP88-213ENST00000576862 FAM76AQ8TAV0 307 aa4.85□□□□□ -1.63
NUP88-213ENST00000576862 WDR20Q8TBZ3 569 aa4.85□□□□□ -1.63
NUP88-213ENST00000576862 FAM81BQ96LP2 452 aa4.85□□□□□ -1.63
NUP88-213ENST00000576862 DUX3Q96PT4 197 aa4.85□□□□□ -1.63
NUP88-213ENST00000576862 ABHD6Q9BV23 337 aa4.85□□□□□ -1.63
NUP88-213ENST00000576862 SPATC1LQ9H0A9 340 aa4.85□□□□□ -1.63
NUP88-213ENST00000576862 CHMP1AQ9HD42 196 aaPredicted RBP4.85□□□□□ -1.63
NUP88-213ENST00000576862 SCRT2Q9NQ03 307 aa4.85□□□□□ -1.63
NUP88-213ENST00000576862 ERRFI1Q9UJM3 462 aaPredicted RBP4.85□□□□□ -1.63
NUP88-213ENST00000576862 FLT1P17948 1338 aa4.85□□□□□ -1.63
NUP88-213ENST00000576862 HFM1A2PYH4 1435 aa4.85□□□□□ -1.63
NUP88-213ENST00000576862 GPATCH8Q9UKJ3 1502 aaKnown RBP4.85□□□□□ -1.63
NUP88-213ENST00000576862 LRRIQ1Q96JM4 1722 aa4.85□□□□□ -1.63
NUP88-213ENST00000576862 CHD1O14646 1710 aa4.84□□□□□ -1.63
NUP88-213ENST00000576862 ABCC10Q5T3U5 1492 aa4.84□□□□□ -1.63
NUP88-213ENST00000576862 NAIPQ13075 1403 aa4.84□□□□□ -1.63
NUP88-213ENST00000576862 SOS1Q07889 1333 aaPredicted RBP4.84□□□□□ -1.63
NUP88-213ENST00000576862 ZNF541Q9H0D2 1346 aa4.84□□□□□ -1.63
NUP88-213ENST00000576862 PRSS47A8MTI9 375 aa4.84□□□□□ -1.63
NUP88-213ENST00000576862 HEPACAM2A8MVW5 462 aa4.84□□□□□ -1.63
NUP88-213ENST00000576862 BLOC1S5-TXNDC5H3BN57 136 aa4.84□□□□□ -1.63
NUP88-213ENST00000576862 TSPAN9O75954 239 aa4.84□□□□□ -1.63
NUP88-213ENST00000576862 ZWINTO95229 277 aa4.84□□□□□ -1.63
NUP88-213ENST00000576862 VDRP11473 427 aa4.84□□□□□ -1.63
NUP88-213ENST00000576862 GNAZP19086 355 aa4.84□□□□□ -1.63
NUP88-213ENST00000576862 PSMC4P43686 418 aa4.84□□□□□ -1.63
NUP88-213ENST00000576862 LMOD3Q0VAK6 560 aa4.84□□□□□ -1.63
NUP88-213ENST00000576862 KRT33BQ14525 404 aa4.84□□□□□ -1.63
NUP88-213ENST00000576862 RILPL1Q5EBL4 403 aa4.84□□□□□ -1.63
NUP88-213ENST00000576862 GRTP1Q5TC63 336 aa4.84□□□□□ -1.63
NUP88-213ENST00000576862 ADIPOR2Q86V24 386 aa4.84□□□□□ -1.63
NUP88-213ENST00000576862 PLD3Q8IV08 490 aa4.84□□□□□ -1.63
NUP88-213ENST00000576862 LINC00346Q8IVM7 164 aa4.84□□□□□ -1.63
NUP88-213ENST00000576862 TAS1R2Q8TE23 839 aa4.84□□□□□ -1.63
NUP88-213ENST00000576862 SLC47A1Q96FL8 570 aa4.84□□□□□ -1.63
NUP88-213ENST00000576862 CALML4Q96GE6 196 aa4.84□□□□□ -1.63
NUP88-213ENST00000576862 OR6C1Q96RD1 312 aa4.84□□□□□ -1.63
NUP88-213ENST00000576862 SLC52A3Q9NQ40 469 aa4.84□□□□□ -1.63
NUP88-213ENST00000576862 ADPRHL2Q9NX46 363 aa4.84□□□□□ -1.63
NUP88-213ENST00000576862 DDX43Q9NXZ2 648 aaKnown RBP4.84□□□□□ -1.63
NUP88-213ENST00000576862 NRBP1Q9UHY1 535 aa4.84□□□□□ -1.63
NUP88-213ENST00000576862 PCDHGB4Q9UN71 923 aa4.84□□□□□ -1.63
NUP88-213ENST00000576862 ABCC2Q92887 1545 aa4.83□□□□□ -1.64
NUP88-213ENST00000576862 ABCC5O15440 1437 aa4.83□□□□□ -1.64
NUP88-213ENST00000576862 LOC102723996A0A087X1L8 192 aa4.83□□□□□ -1.64
NUP88-213ENST00000576862 ELOVL7A1L3X0 281 aa4.83□□□□□ -1.64
NUP88-213ENST00000576862 SSX4O60224 188 aa4.83□□□□□ -1.64
NUP88-213ENST00000576862 PCDH7O60245 1069 aa4.83□□□□□ -1.64
NUP88-213ENST00000576862 ZG16O60844 167 aa4.83□□□□□ -1.64
NUP88-213ENST00000576862 AVILO75366 819 aa4.83□□□□□ -1.64
NUP88-213ENST00000576862 GAS8-AS1O95177 125 aa4.83□□□□□ -1.64
NUP88-213ENST00000576862 PGM3O95394 542 aa4.83□□□□□ -1.64
NUP88-213ENST00000576862 H1F0P07305 194 aaKnown RBP4.83□□□□□ -1.64
NUP88-213ENST00000576862 EPHA2P29317 976 aa4.83□□□□□ -1.64
NUP88-213ENST00000576862 HOXC8P31273 242 aa4.83□□□□□ -1.64
NUP88-213ENST00000576862 NR0B1P51843 470 aaKnown RBP4.83□□□□□ -1.64
NUP88-213ENST00000576862 SNX16P57768 344 aa4.83□□□□□ -1.64
NUP88-213ENST00000576862 SIRPAP78324 504 aa4.83□□□□□ -1.64
NUP88-213ENST00000576862 FAM53AQ6NSI3 398 aaPredicted RBP4.83□□□□□ -1.64
NUP88-213ENST00000576862 CASC1Q6TDU7 716 aa4.83□□□□□ -1.64
NUP88-213ENST00000576862 FOXP4Q8IVH2 680 aaPredicted RBP4.83□□□□□ -1.64
NUP88-213ENST00000576862 APLFQ8IW19 511 aaPredicted RBP4.83□□□□□ -1.64
NUP88-213ENST00000576862 CNBD1Q8NA66 436 aa4.83□□□□□ -1.64
NUP88-213ENST00000576862 OLIG1Q8TAK6 271 aa4.83□□□□□ -1.64
NUP88-213ENST00000576862 PTPMT1Q8WUK0 201 aaPredicted RBP4.83□□□□□ -1.64
NUP88-213ENST00000576862 SLC22A18Q96BI1 424 aa4.83□□□□□ -1.64
NUP88-213ENST00000576862 LITAFQ99732 161 aa4.83□□□□□ -1.64
NUP88-213ENST00000576862 KIFC3Q9BVG8 833 aa4.83□□□□□ -1.64
NUP88-213ENST00000576862 OSGEPL1Q9H4B0 414 aa4.83□□□□□ -1.64
NUP88-213ENST00000576862 CFDP1Q9UEE9 299 aaPredicted RBP4.83□□□□□ -1.64
NUP88-213ENST00000576862 WBP11Q9Y2W2 641 aaKnown RBP4.83□□□□□ -1.64
NUP88-213ENST00000576862 SPIN1Q9Y657 262 aaPredicted RBP4.83□□□□□ -1.64
NUP88-213ENST00000576862 SUPT6HQ7KZ85 1726 aaKnown RBP4.83□□□□□ -1.64
NUP88-213ENST00000576862 MAPKBP1O60336 1514 aa4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms