RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 CBSLP0DN79 551 aa10.73□□□□□ -0.69
VPS53-207ENST00000570510 CBSP35520 551 aa10.73□□□□□ -0.69
VPS53-207ENST00000570510 CA7P43166 264 aa10.73□□□□□ -0.69
VPS53-207ENST00000570510 DCDC1P59894 354 aa10.73□□□□□ -0.69
VPS53-207ENST00000570510 CCDC70Q6NSX1 233 aa10.73□□□□□ -0.69
VPS53-207ENST00000570510 DUS1LQ6P1R4 473 aaKnown RBP10.73□□□□□ -0.69
VPS53-207ENST00000570510 ISLR2Q6UXK2 745 aa10.73□□□□□ -0.69
VPS53-207ENST00000570510 TAOK1Q7L7X3 1001 aa10.73□□□□□ -0.69
VPS53-207ENST00000570510 PPP1R32Q7Z5V6 425 aa10.73□□□□□ -0.69
VPS53-207ENST00000570510 CATSPER1Q8NEC5 780 aa10.73□□□□□ -0.69
VPS53-207ENST00000570510 OR8K1Q8NGG5 319 aa10.73□□□□□ -0.69
VPS53-207ENST00000570510 LCN9Q8WX39 176 aa10.73□□□□□ -0.69
VPS53-207ENST00000570510 NACC2Q96BF6 587 aa10.73□□□□□ -0.69
VPS53-207ENST00000570510 THOC3Q96J01 351 aaKnown RBP10.73□□□□□ -0.69
VPS53-207ENST00000570510 CSPG4P5Q96PW8 444 aa10.73□□□□□ -0.69
VPS53-207ENST00000570510 DNAJC7Q99615 494 aa10.73□□□□□ -0.69
VPS53-207ENST00000570510 KLHL25Q9H0H3 589 aa10.73□□□□□ -0.69
VPS53-207ENST00000570510 SRMSQ9H3Y6 488 aa10.73□□□□□ -0.69
VPS53-207ENST00000570510 KIR3DX1Q9H7L2 352 aa10.73□□□□□ -0.69
VPS53-207ENST00000570510 GPAMQ9HCL2 828 aa10.73□□□□□ -0.69
VPS53-207ENST00000570510 STAU2Q9NUL3 570 aaKnown RBP eCLIP10.73□□□□□ -0.69
VPS53-207ENST00000570510 ZNHIT6Q9NWK9 470 aaKnown RBP10.73□□□□□ -0.69
VPS53-207ENST00000570510 IFNKQ9P0W0 207 aa10.73□□□□□ -0.69
VPS53-207ENST00000570510 SEC14L3Q9UDX4 400 aa10.73□□□□□ -0.69
VPS53-207ENST00000570510 AMACRQ9UHK6 382 aa10.73□□□□□ -0.69
VPS53-207ENST00000570510 SLC24A2Q9UI40 661 aa10.73□□□□□ -0.69
VPS53-207ENST00000570510 CDYLQ9Y232 598 aa10.73□□□□□ -0.69
VPS53-207ENST00000570510 TMCO5BA8MYB1 307 aa10.72□□□□□ -0.69
VPS53-207ENST00000570510 MATN3O15232 486 aa10.72□□□□□ -0.69
VPS53-207ENST00000570510 ALOX12BO75342 701 aa10.72□□□□□ -0.69
VPS53-207ENST00000570510 CLDN14O95500 239 aa10.72□□□□□ -0.69
VPS53-207ENST00000570510 CRYABP02511 175 aaKnown RBP10.72□□□□□ -0.69
VPS53-207ENST00000570510 GYPCP04921 128 aa10.72□□□□□ -0.69
VPS53-207ENST00000570510 SLC35G4P0C7Q5 338 aa10.72□□□□□ -0.69
VPS53-207ENST00000570510 PIRTP0C851 137 aa10.72□□□□□ -0.69
VPS53-207ENST00000570510 MSL3P1P0C860 447 aa10.72□□□□□ -0.69
VPS53-207ENST00000570510 MYBL2P10244 700 aa10.72□□□□□ -0.69
VPS53-207ENST00000570510 AGAP20933 346 aa10.72□□□□□ -0.69
VPS53-207ENST00000570510 NDUFS1P28331 727 aa10.72□□□□□ -0.69
VPS53-207ENST00000570510 PRDX3P30048 256 aaKnown RBP10.72□□□□□ -0.69
VPS53-207ENST00000570510 CD86P42081 329 aa10.72□□□□□ -0.69
VPS53-207ENST00000570510 Q0VFX4 171 aa10.72□□□□□ -0.69
VPS53-207ENST00000570510 MAMLD1Q13495 774 aa10.72□□□□□ -0.69
VPS53-207ENST00000570510 NFE2L1Q14494 772 aa10.72□□□□□ -0.69
VPS53-207ENST00000570510 KRT81Q14533 505 aa10.72□□□□□ -0.69
VPS53-207ENST00000570510 BOLA3Q53S33 107 aa10.72□□□□□ -0.69
VPS53-207ENST00000570510 ZFYVE27Q5T4F4 411 aa10.72□□□□□ -0.69
VPS53-207ENST00000570510 TMEM220Q6QAJ8 160 aa10.72□□□□□ -0.69
VPS53-207ENST00000570510 IGFL2Q6UWQ7 119 aa10.72□□□□□ -0.69
VPS53-207ENST00000570510 ZNF571Q7Z3V5 609 aaPredicted RBP10.72□□□□□ -0.69
VPS53-207ENST00000570510 POLNQ7Z5Q5 900 aa10.72□□□□□ -0.69
VPS53-207ENST00000570510 C11orf96Q7Z7L8 435 aa10.72□□□□□ -0.69
VPS53-207ENST00000570510 CNGA4Q8IV77 575 aa10.72□□□□□ -0.69
VPS53-207ENST00000570510 CHDHQ8NE62 594 aaPredicted RBP10.72□□□□□ -0.69
VPS53-207ENST00000570510 PROKR1Q8TCW9 393 aa10.72□□□□□ -0.69
VPS53-207ENST00000570510 NDC1Q9BTX1 674 aa10.72□□□□□ -0.69
VPS53-207ENST00000570510 XPO4Q9C0E2 1151 aaKnown RBP10.72□□□□□ -0.69
VPS53-207ENST00000570510 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP10.72□□□□□ -0.69
VPS53-207ENST00000570510 WWP1Q9H0M0 922 aa10.72□□□□□ -0.69
VPS53-207ENST00000570510 DEF6Q9H4E7 631 aa10.72□□□□□ -0.69
VPS53-207ENST00000570510 SLC6A20Q9NP91 592 aa10.72□□□□□ -0.69
VPS53-207ENST00000570510 FAM8A1Q9UBU6 413 aa10.72□□□□□ -0.69
VPS53-207ENST00000570510 POMT2Q9UKY4 750 aa10.72□□□□□ -0.69
VPS53-207ENST00000570510 PCDHGB6Q9Y5F9 930 aa10.72□□□□□ -0.69
VPS53-207ENST00000570510 ANKHD1Q8IWZ3 2542 aaKnown RBP10.72□□□□□ -0.69
VPS53-207ENST00000570510 TRAV17A0A0B4J275 112 aa10.71□□□□□ -0.69
VPS53-207ENST00000570510 OR2AG2A6NM03 316 aa10.71□□□□□ -0.69
VPS53-207ENST00000570510 DDX3XO00571 662 aaKnown RBP eCLIP10.71□□□□□ -0.69
VPS53-207ENST00000570510 FTLP02792 175 aaPredicted RBP10.71□□□□□ -0.69
VPS53-207ENST00000570510 ST6GAL1P15907 406 aa10.71□□□□□ -0.69
VPS53-207ENST00000570510 ALAS2P22557 587 aa10.71□□□□□ -0.69
VPS53-207ENST00000570510 MMP11P24347 488 aa10.71□□□□□ -0.69
VPS53-207ENST00000570510 PCK1P35558 622 aa10.71□□□□□ -0.69
VPS53-207ENST00000570510 DMPKQ09013 629 aa10.71□□□□□ -0.69
VPS53-207ENST00000570510 PIGHQ14442 188 aaPredicted RBP10.71□□□□□ -0.69
VPS53-207ENST00000570510 INAQ16352 499 aa10.71□□□□□ -0.69
VPS53-207ENST00000570510 DPYSL2Q16555 572 aa10.71□□□□□ -0.69
VPS53-207ENST00000570510 TUBB8Q3ZCM7 444 aa10.71□□□□□ -0.69
VPS53-207ENST00000570510 NKAIN1Q4KMZ8 207 aa10.71□□□□□ -0.69
VPS53-207ENST00000570510 KHDC1Q4VXA5 237 aaKnown RBP10.71□□□□□ -0.69
VPS53-207ENST00000570510 ZNF789Q5FWF6 425 aa10.71□□□□□ -0.69
VPS53-207ENST00000570510 RHBDD2Q6NTF9 364 aa10.71□□□□□ -0.69
VPS53-207ENST00000570510 MEX3BQ6ZN04 569 aaKnown RBP10.71□□□□□ -0.69
VPS53-207ENST00000570510 VSTM4Q8IW00 320 aa10.71□□□□□ -0.69
VPS53-207ENST00000570510 CCNYQ8ND76 341 aa10.71□□□□□ -0.69
VPS53-207ENST00000570510 SUN3Q8TAQ9 357 aa10.71□□□□□ -0.69
VPS53-207ENST00000570510 CCDC110Q8TBZ0 833 aa10.71□□□□□ -0.69
VPS53-207ENST00000570510 VPS35Q96QK1 796 aa10.71□□□□□ -0.69
VPS53-207ENST00000570510 LMF1Q96S06 567 aa10.71□□□□□ -0.69
VPS53-207ENST00000570510 INSM2Q96T92 566 aaPredicted RBP10.71□□□□□ -0.69
VPS53-207ENST00000570510 SPOCK3Q9BQ16 436 aa10.71□□□□□ -0.69
VPS53-207ENST00000570510 MAGEE1Q9HCI5 957 aa10.71□□□□□ -0.69
VPS53-207ENST00000570510 DHCR7Q9UBM7 475 aaKnown RBP10.71□□□□□ -0.69
VPS53-207ENST00000570510 ACSL5Q9ULC5 683 aa10.71□□□□□ -0.69
VPS53-207ENST00000570510 HEBP2Q9Y5Z4 205 aa10.71□□□□□ -0.69
VPS53-207ENST00000570510 DNMT3AQ9Y6K1 912 aaPredicted RBP10.71□□□□□ -0.69
VPS53-207ENST00000570510 TMEM191CA6NGB0 347 aa10.7□□□□□ -0.7
VPS53-207ENST00000570510 C19orf84I3L1E1 186 aa10.7□□□□□ -0.7
VPS53-207ENST00000570510 ATMINO43313 823 aaPredicted RBP10.7□□□□□ -0.7
VPS53-207ENST00000570510 SLC19A2O60779 497 aa10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms