RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 PRAMEF17Q5VTA0 474 aa15.62■□□□□ 0.09
CLN3-229ENST00000567963 IZUMO3Q5VZ72 239 aa15.62■□□□□ 0.09
CLN3-229ENST00000567963 ASB18Q6ZVZ8 466 aa15.62■□□□□ 0.09
CLN3-229ENST00000567963 MICALCLQ6ZW33 695 aa15.62■□□□□ 0.09
CLN3-229ENST00000567963 TAS2R42Q7RTR8 314 aa15.62■□□□□ 0.09
CLN3-229ENST00000567963 PEX26Q7Z412 305 aa15.62■□□□□ 0.09
CLN3-229ENST00000567963 TEX19Q8NA77 164 aa15.62■□□□□ 0.09
CLN3-229ENST00000567963 PHC3Q8NDX5 983 aa15.62■□□□□ 0.09
CLN3-229ENST00000567963 THAP4Q8WY91 577 aa15.62■□□□□ 0.09
CLN3-229ENST00000567963 MR1Q95460 341 aa15.62■□□□□ 0.09
CLN3-229ENST00000567963 CDKN2AIPNLQ96HQ2 116 aa15.62■□□□□ 0.09
CLN3-229ENST00000567963 LRFN5Q96NI6 719 aa15.62■□□□□ 0.09
CLN3-229ENST00000567963 TFB2MQ9H5Q4 396 aaKnown RBP15.62■□□□□ 0.09
CLN3-229ENST00000567963 LRRC40Q9H9A6 602 aa15.62■□□□□ 0.09
CLN3-229ENST00000567963 VPS37BQ9H9H4 285 aa15.62■□□□□ 0.09
CLN3-229ENST00000567963 PACSIN2Q9UNF0 486 aaPredicted RBP15.62■□□□□ 0.09
CLN3-229ENST00000567963 PIKFYVEQ9Y2I7 2098 aa15.62■□□□□ 0.09
CLN3-229ENST00000567963 GSAPA4D1B5 854 aa15.61■□□□□ 0.09
CLN3-229ENST00000567963 BTN3A3O00478 584 aa15.61■□□□□ 0.09
CLN3-229ENST00000567963 DDX3YO15523 660 aaKnown RBP15.61■□□□□ 0.09
CLN3-229ENST00000567963 DNAJB5O75953 348 aa15.61■□□□□ 0.09
CLN3-229ENST00000567963 PTMAP06454 111 aaKnown RBP15.61■□□□□ 0.09
CLN3-229ENST00000567963 MSL3P1P0C860 447 aa15.61■□□□□ 0.09
CLN3-229ENST00000567963 PRSS56P0CW18 603 aa15.61■□□□□ 0.09
CLN3-229ENST00000567963 GSDMDP57764 484 aa15.61■□□□□ 0.09
CLN3-229ENST00000567963 RPA4Q13156 261 aa15.61■□□□□ 0.09
CLN3-229ENST00000567963 KLF1Q13351 362 aaPredicted RBP15.61■□□□□ 0.09
CLN3-229ENST00000567963 PLEKHS1Q5SXH7 462 aa15.61■□□□□ 0.09
CLN3-229ENST00000567963 CLDN19Q8N6F1 224 aa15.61■□□□□ 0.09
CLN3-229ENST00000567963 UBL4BQ8N7F7 174 aa15.61■□□□□ 0.09
CLN3-229ENST00000567963 OR52E1Q8NGJ3 308 aa15.61■□□□□ 0.09
CLN3-229ENST00000567963 STYXQ8WUJ0 223 aa15.61■□□□□ 0.09
CLN3-229ENST00000567963 CPT1BQ92523 772 aa15.61■□□□□ 0.09
CLN3-229ENST00000567963 NRTNQ99748 197 aa15.61■□□□□ 0.09
CLN3-229ENST00000567963 TRIM55Q9BYV6 548 aa15.61■□□□□ 0.09
CLN3-229ENST00000567963 MVB12BQ9H7P6 319 aa15.61■□□□□ 0.09
CLN3-229ENST00000567963 FANCEQ9HB96 536 aa15.61■□□□□ 0.09
CLN3-229ENST00000567963 SYTL2Q9HCH5 934 aa15.61■□□□□ 0.09
CLN3-229ENST00000567963 SPTBP11277 2137 aa15.61■□□□□ 0.09
CLN3-229ENST00000567963 MEN1O00255 615 aa15.6■□□□□ 0.09
CLN3-229ENST00000567963 BTN3A1O00481 513 aa15.6■□□□□ 0.09
CLN3-229ENST00000567963 GSTM1P09488 218 aa15.6■□□□□ 0.09
CLN3-229ENST00000567963 GDF10P55107 478 aa15.6■□□□□ 0.09
CLN3-229ENST00000567963 GSTM4Q03013 218 aa15.6■□□□□ 0.09
CLN3-229ENST00000567963 CACNG1Q06432 222 aa15.6■□□□□ 0.09
CLN3-229ENST00000567963 ABRQ12979 859 aa15.6■□□□□ 0.09
CLN3-229ENST00000567963 IL10RAQ13651 578 aa15.6■□□□□ 0.09
CLN3-229ENST00000567963 POU6F1Q14863 301 aa15.6■□□□□ 0.09
CLN3-229ENST00000567963 P3H1Q32P28 736 aa15.6■□□□□ 0.09
CLN3-229ENST00000567963 LCN10Q6JVE6 187 aa15.6■□□□□ 0.09
CLN3-229ENST00000567963 ZNF449Q6P9G9 518 aa15.6■□□□□ 0.09
CLN3-229ENST00000567963 KIAA1328Q86T90 577 aa15.6■□□□□ 0.09
CLN3-229ENST00000567963 AMIGO1Q86WK6 493 aa15.6■□□□□ 0.09
CLN3-229ENST00000567963 PIANPQ8IYJ0 282 aa15.6■□□□□ 0.09
CLN3-229ENST00000567963 DSELQ8IZU8 1212 aa15.6■□□□□ 0.09
CLN3-229ENST00000567963 SYCE1Q8N0S2 351 aa15.6■□□□□ 0.09
CLN3-229ENST00000567963 TFGQ92734 400 aaPredicted RBP15.6■□□□□ 0.09
CLN3-229ENST00000567963 TMEM121Q9BTD3 319 aa15.6■□□□□ 0.09
CLN3-229ENST00000567963 PITPNM3Q9BZ71 974 aa15.6■□□□□ 0.09
CLN3-229ENST00000567963 RBSNQ9H1K0 784 aa15.6■□□□□ 0.09
CLN3-229ENST00000567963 CHST8Q9H2A9 424 aa15.6■□□□□ 0.09
CLN3-229ENST00000567963 PIH1D1Q9NWS0 290 aaKnown RBP15.6■□□□□ 0.09
CLN3-229ENST00000567963 MROH6A6NGR9 719 aa15.59■□□□□ 0.09
CLN3-229ENST00000567963 MIF4GDA9UHW6 222 aaKnown RBP15.59■□□□□ 0.09
CLN3-229ENST00000567963 TMEM150CB9EJG8 249 aa15.59■□□□□ 0.09
CLN3-229ENST00000567963 PSMD3O43242 534 aa15.59■□□□□ 0.09
CLN3-229ENST00000567963 AP2A2O94973 939 aa15.59■□□□□ 0.09
CLN3-229ENST00000567963 AP2A1O95782 977 aa15.59■□□□□ 0.09
CLN3-229ENST00000567963 PDGFAP04085 211 aa15.59■□□□□ 0.09
CLN3-229ENST00000567963 ST6GAL1P15907 406 aa15.59■□□□□ 0.09
CLN3-229ENST00000567963 PSMA3P25788 255 aa15.59■□□□□ 0.09
CLN3-229ENST00000567963 RORAP35398 523 aa15.59■□□□□ 0.09
CLN3-229ENST00000567963 PREPP48147 710 aa15.59■□□□□ 0.09
CLN3-229ENST00000567963 PRKG2Q13237 762 aa15.59■□□□□ 0.09
CLN3-229ENST00000567963 BOP1Q14137 746 aaKnown RBP15.59■□□□□ 0.09
CLN3-229ENST00000567963 UBAP2LQ14157 1087 aaKnown RBP15.59■□□□□ 0.09
CLN3-229ENST00000567963 DBN1Q16643 649 aa15.59■□□□□ 0.09
CLN3-229ENST00000567963 ZNF789Q5FWF6 425 aa15.59■□□□□ 0.09
CLN3-229ENST00000567963 ADGRF3Q8IZF5 1079 aa15.59■□□□□ 0.09
CLN3-229ENST00000567963 OR1L3Q8NH93 324 aa15.59■□□□□ 0.09
CLN3-229ENST00000567963 SLC35B2Q8TB61 432 aa15.59■□□□□ 0.09
CLN3-229ENST00000567963 CLIP3Q96DZ5 547 aa15.59■□□□□ 0.09
CLN3-229ENST00000567963 TRAPPC9Q96Q05 1148 aa15.59■□□□□ 0.09
CLN3-229ENST00000567963 BAG1Q99933 345 aaPredicted RBP15.59■□□□□ 0.09
CLN3-229ENST00000567963 PLAAQ9Y263 795 aa15.59■□□□□ 0.09
CLN3-229ENST00000567963 R3HDM2Q9Y2K5 976 aaKnown RBP15.59■□□□□ 0.09
CLN3-229ENST00000567963 NBASA2RRP1 2371 aa15.59■□□□□ 0.09
CLN3-229ENST00000567963 TCRBV7S2A1N4TA0A589 114 aa15.59■□□□□ 0.09
CLN3-229ENST00000567963 C2orf74A8MZ97 194 aa15.59■□□□□ 0.09
CLN3-229ENST00000567963 MAP3K7O43318 606 aa15.59■□□□□ 0.09
CLN3-229ENST00000567963 RAB40ALP0C0E4 278 aa15.59■□□□□ 0.09
CLN3-229ENST00000567963 NSG1P42857 185 aa15.59■□□□□ 0.09
CLN3-229ENST00000567963 MLLT10P55197 1068 aa15.59■□□□□ 0.09
CLN3-229ENST00000567963 TMEM139Q8IV31 216 aa15.59■□□□□ 0.09
CLN3-229ENST00000567963 MIB2Q96AX9 1013 aa15.59■□□□□ 0.09
CLN3-229ENST00000567963 ALS2CR12Q96Q35 445 aa15.59■□□□□ 0.09
CLN3-229ENST00000567963 NLNQ9BYT8 704 aa15.59■□□□□ 0.09
CLN3-229ENST00000567963 ING2Q9H160 280 aa15.59■□□□□ 0.09
CLN3-229ENST00000567963 XKR8Q9H6D3 395 aa15.59■□□□□ 0.09
CLN3-229ENST00000567963 SMARCAL1Q9NZC9 954 aa15.59■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 81.3 ms