RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 FBXO8Q9NRD0 319 aa13.06□□□□□ -0.32
CLK3-216ENST00000564468 GNPTGQ9UJJ9 305 aa13.06□□□□□ -0.32
CLK3-216ENST00000564468 VPS9D1Q9Y2B5 631 aa13.06□□□□□ -0.32
CLK3-216ENST00000564468 PRSS21Q9Y6M0 314 aa13.06□□□□□ -0.32
CLK3-216ENST00000564468 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.06□□□□□ -0.32
CLK3-216ENST00000564468 SLC5A10A0PJK1 596 aa13.05□□□□□ -0.32
CLK3-216ENST00000564468 C9orf172C9J069 976 aa13.05□□□□□ -0.32
CLK3-216ENST00000564468 IQCJ-SCHIP1C9J366 451 aaPredicted RBP13.05□□□□□ -0.32
CLK3-216ENST00000564468 H3BMM5 538 aa13.05□□□□□ -0.32
CLK3-216ENST00000564468 STMND1H3BQB6 276 aa13.05□□□□□ -0.32
CLK3-216ENST00000564468 SMAPO00193 183 aa13.05□□□□□ -0.32
CLK3-216ENST00000564468 DNALI1O14645 258 aaPredicted RBP13.05□□□□□ -0.32
CLK3-216ENST00000564468 OR1I1O60431 355 aa13.05□□□□□ -0.32
CLK3-216ENST00000564468 AVILO75366 819 aa13.05□□□□□ -0.32
CLK3-216ENST00000564468 TMEM63AO94886 807 aa13.05□□□□□ -0.32
CLK3-216ENST00000564468 APOA4P06727 396 aa13.05□□□□□ -0.32
CLK3-216ENST00000564468 PLA2G2AP14555 144 aa13.05□□□□□ -0.32
CLK3-216ENST00000564468 PDHA2P29803 388 aa13.05□□□□□ -0.32
CLK3-216ENST00000564468 BOP1Q14137 746 aaKnown RBP13.05□□□□□ -0.32
CLK3-216ENST00000564468 DHX34Q14147 1143 aaKnown RBP13.05□□□□□ -0.32
CLK3-216ENST00000564468 TMED2Q15363 201 aa13.05□□□□□ -0.32
CLK3-216ENST00000564468 CACHD1Q5VU97 1274 aa13.05□□□□□ -0.32
CLK3-216ENST00000564468 DUS1LQ6P1R4 473 aaKnown RBP13.05□□□□□ -0.32
CLK3-216ENST00000564468 XKR5Q6UX68 686 aa13.05□□□□□ -0.32
CLK3-216ENST00000564468 GPR155Q7Z3F1 870 aa13.05□□□□□ -0.32
CLK3-216ENST00000564468 HOOK3Q86VS8 718 aa13.05□□□□□ -0.32
CLK3-216ENST00000564468 KMT5CQ86Y97 462 aa13.05□□□□□ -0.32
CLK3-216ENST00000564468 TBC1D21Q8IYX1 336 aa13.05□□□□□ -0.32
CLK3-216ENST00000564468 GABPB2Q8TAK5 448 aaPredicted RBP13.05□□□□□ -0.32
CLK3-216ENST00000564468 GSDMBQ8TAX9 411 aa13.05□□□□□ -0.32
CLK3-216ENST00000564468 LCN9Q8WX39 176 aa13.05□□□□□ -0.32
CLK3-216ENST00000564468 HRASLS2Q9NWW9 162 aa13.05□□□□□ -0.32
CLK3-216ENST00000564468 OCIAD1Q9NX40 245 aa13.05□□□□□ -0.32
CLK3-216ENST00000564468 POLG2Q9UHN1 485 aa13.05□□□□□ -0.32
CLK3-216ENST00000564468 UBA6A0AVT1 1052 aaPredicted RBP13.04□□□□□ -0.32
CLK3-216ENST00000564468 OR6C74A6NCV1 312 aa13.04□□□□□ -0.32
CLK3-216ENST00000564468 OR5K3A6NET4 321 aa13.04□□□□□ -0.32
CLK3-216ENST00000564468 GOLGA8MH3BSY2 632 aa13.04□□□□□ -0.32
CLK3-216ENST00000564468 NDC80O14777 642 aa13.04□□□□□ -0.32
CLK3-216ENST00000564468 POLR1CO15160 346 aaPredicted RBP13.04□□□□□ -0.32
CLK3-216ENST00000564468 RPN2P04844 631 aa13.04□□□□□ -0.32
CLK3-216ENST00000564468 OGNP20774 298 aaKnown RBP13.04□□□□□ -0.32
CLK3-216ENST00000564468 RPS3P23396 243 aaKnown RBP eCLIP13.04□□□□□ -0.321e-6■■□□□ 12.2
CLK3-216ENST00000564468 CASQ1P31415 396 aa13.04□□□□□ -0.32
CLK3-216ENST00000564468 PREPP48147 710 aa13.04□□□□□ -0.32
CLK3-216ENST00000564468 LEPRP48357 1165 aaKnown RBP13.04□□□□□ -0.32
CLK3-216ENST00000564468 ARL4DP49703 201 aa13.04□□□□□ -0.32
CLK3-216ENST00000564468 ATP1A2P50993 1020 aa13.04□□□□□ -0.32
CLK3-216ENST00000564468 DR1Q01658 176 aa13.04□□□□□ -0.32
CLK3-216ENST00000564468 CLN3Q13286 438 aa13.04□□□□□ -0.32
CLK3-216ENST00000564468 THOC5Q13769 683 aaKnown RBP13.04□□□□□ -0.32
CLK3-216ENST00000564468 SEMA3AQ14563 771 aa13.04□□□□□ -0.32
CLK3-216ENST00000564468 BRD3Q15059 726 aa13.04□□□□□ -0.32
CLK3-216ENST00000564468 ANKRD20A4Q4UJ75 823 aa13.04□□□□□ -0.32
CLK3-216ENST00000564468 DNTTIP2Q5QJE6 756 aaKnown RBP13.04□□□□□ -0.32
CLK3-216ENST00000564468 RNASEH2BQ5TBB1 312 aaKnown RBP13.04□□□□□ -0.32
CLK3-216ENST00000564468 CES3Q6UWW8 571 aa13.04□□□□□ -0.32
CLK3-216ENST00000564468 FAM92BQ6ZTR7 304 aa13.04□□□□□ -0.32
CLK3-216ENST00000564468 MICALCLQ6ZW33 695 aa13.04□□□□□ -0.32
CLK3-216ENST00000564468 TMEM135Q86UB9 458 aa13.04□□□□□ -0.32
CLK3-216ENST00000564468 KLHL7Q8IXQ5 586 aa13.04□□□□□ -0.32
CLK3-216ENST00000564468 LMNTD2Q8IXW0 634 aa13.04□□□□□ -0.32
CLK3-216ENST00000564468 BMPERQ8N8U9 685 aa13.04□□□□□ -0.32
CLK3-216ENST00000564468 CALML6Q8TD86 181 aa13.04□□□□□ -0.32
CLK3-216ENST00000564468 KLHL6Q8WZ60 621 aa13.04□□□□□ -0.32
CLK3-216ENST00000564468 ZNF669Q96BR6 464 aaPredicted RBP13.04□□□□□ -0.32
CLK3-216ENST00000564468 CCNL2Q96S94 520 aaPredicted RBP13.04□□□□□ -0.32
CLK3-216ENST00000564468 TRIT1Q9H3H1 467 aaKnown RBP13.04□□□□□ -0.32
CLK3-216ENST00000564468 SRMSQ9H3Y6 488 aa13.04□□□□□ -0.32
CLK3-216ENST00000564468 TFB2MQ9H5Q4 396 aaKnown RBP13.04□□□□□ -0.32
CLK3-216ENST00000564468 SEMA5BQ9P283 1151 aa13.04□□□□□ -0.32
CLK3-216ENST00000564468 MARCH4Q9P2E8 410 aaPredicted RBP13.04□□□□□ -0.32
CLK3-216ENST00000564468 ASF1AQ9Y294 204 aa13.04□□□□□ -0.32
CLK3-216ENST00000564468 B3GALT1Q9Y5Z6 326 aa13.04□□□□□ -0.32
CLK3-216ENST00000564468 MRFAP1Q9Y605 127 aa13.04□□□□□ -0.32
CLK3-216ENST00000564468 MAD1L1Q9Y6D9 718 aa13.04□□□□□ -0.32
CLK3-216ENST00000564468 RPS6KL1Q9Y6S9 549 aa13.04□□□□□ -0.32
CLK3-216ENST00000564468 NAV2Q8IVL1 2488 aa13.04□□□□□ -0.32
CLK3-216ENST00000564468 SNRNP200O75643 2136 aaKnown RBP13.03□□□□□ -0.32
CLK3-216ENST00000564468 TLCD2A6NGC4 264 aa13.03□□□□□ -0.32
CLK3-216ENST00000564468 J3QKU1 62 aa13.03□□□□□ -0.32
CLK3-216ENST00000564468 MAP3K7O43318 606 aa13.03□□□□□ -0.32
CLK3-216ENST00000564468 C1QL1O75973 258 aa13.03□□□□□ -0.32
CLK3-216ENST00000564468 USP1O94782 785 aa13.03□□□□□ -0.32
CLK3-216ENST00000564468 MAGEA3P43357 314 aa13.03□□□□□ -0.32
CLK3-216ENST00000564468 ARCN1P48444 511 aaKnown RBP13.03□□□□□ -0.32
CLK3-216ENST00000564468 SEPHS1P49903 392 aa13.03□□□□□ -0.32
CLK3-216ENST00000564468 ADARP55265 1226 aaKnown RBP13.03□□□□□ -0.32
CLK3-216ENST00000564468 FOXM1Q08050 763 aa13.03□□□□□ -0.32
CLK3-216ENST00000564468 HSPA14Q0VDF9 509 aa13.03□□□□□ -0.32
CLK3-216ENST00000564468 IL11RAQ14626 422 aa13.03□□□□□ -0.32
CLK3-216ENST00000564468 TYSND1Q2T9J0 566 aa13.03□□□□□ -0.32
CLK3-216ENST00000564468 DNAJC21Q5F1R6 531 aaKnown RBP13.03□□□□□ -0.32
CLK3-216ENST00000564468 IZUMO3Q5VZ72 239 aa13.03□□□□□ -0.32
CLK3-216ENST00000564468 ANKS6Q68DC2 871 aa13.03□□□□□ -0.32
CLK3-216ENST00000564468 NEPROQ6NW34 567 aa13.03□□□□□ -0.32
CLK3-216ENST00000564468 LDB1Q86U70 411 aaPredicted RBP13.03□□□□□ -0.32
CLK3-216ENST00000564468 BPHLQ86WA6 291 aaPredicted RBP13.03□□□□□ -0.32
CLK3-216ENST00000564468 ZNF843Q8N446 348 aa13.03□□□□□ -0.32
CLK3-216ENST00000564468 PHC3Q8NDX5 983 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms