RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 NXPE2Q96DL1 559 aa12.68□□□□□ -0.38
NEDD8-208ENST00000560427 FMO2Q99518 471 aa12.68□□□□□ -0.38
NEDD8-208ENST00000560427 TRIT1Q9H3H1 467 aaKnown RBP12.68□□□□□ -0.38
NEDD8-208ENST00000560427 PDP2Q9P2J9 529 aa12.68□□□□□ -0.38
NEDD8-208ENST00000560427 EPHA6Q9UF33 1036 aa12.68□□□□□ -0.38
NEDD8-208ENST00000560427 POLG2Q9UHN1 485 aa12.68□□□□□ -0.38
NEDD8-208ENST00000560427 SLC24A2Q9UI40 661 aa12.68□□□□□ -0.38
NEDD8-208ENST00000560427 ASF1AQ9Y294 204 aa12.68□□□□□ -0.38
NEDD8-208ENST00000560427 ENTPD2Q9Y5L3 495 aa12.68□□□□□ -0.38
NEDD8-208ENST00000560427 CFAP20Q9Y6A4 193 aaKnown RBP12.68□□□□□ -0.38
NEDD8-208ENST00000560427 ASXL3Q9C0F0 2248 aa12.68□□□□□ -0.38
NEDD8-208ENST00000560427 CCDC187A0A096LP49 1063 aa12.67□□□□□ -0.38
NEDD8-208ENST00000560427 FAM149AA5PLN7 773 aa12.67□□□□□ -0.38
NEDD8-208ENST00000560427 HGSO14964 777 aaPredicted RBP12.67□□□□□ -0.38
NEDD8-208ENST00000560427 TOX3O15405 576 aaPredicted RBP12.67□□□□□ -0.38
NEDD8-208ENST00000560427 VPS26AO75436 327 aa12.67□□□□□ -0.38
NEDD8-208ENST00000560427 HAUS5O94927 633 aa12.67□□□□□ -0.38
NEDD8-208ENST00000560427 PROS1P07225 676 aa12.67□□□□□ -0.38
NEDD8-208ENST00000560427 CBSLP0DN79 551 aa12.67□□□□□ -0.38
NEDD8-208ENST00000560427 THRAP10827 490 aa12.67□□□□□ -0.38
NEDD8-208ENST00000560427 ENO3P13929 434 aaPredicted RBP12.67□□□□□ -0.38
NEDD8-208ENST00000560427 AMD1P17707 334 aa12.67□□□□□ -0.38
NEDD8-208ENST00000560427 SPINK2P20155 84 aa12.67□□□□□ -0.38
NEDD8-208ENST00000560427 STX2P32856 288 aa12.67□□□□□ -0.38
NEDD8-208ENST00000560427 CSF2RBP32927 897 aa12.67□□□□□ -0.38
NEDD8-208ENST00000560427 CBSP35520 551 aa12.67□□□□□ -0.38
NEDD8-208ENST00000560427 SKIV2L2P42285 1042 aaKnown RBP12.67□□□□□ -0.38
NEDD8-208ENST00000560427 MLLT3P42568 568 aaPredicted RBP12.67□□□□□ -0.38
NEDD8-208ENST00000560427 MAGEA4P43358 317 aa12.67□□□□□ -0.38
NEDD8-208ENST00000560427 CARSP49589 748 aaKnown RBP12.67□□□□□ -0.38
NEDD8-208ENST00000560427 CLCN7P51798 805 aa12.67□□□□□ -0.38
NEDD8-208ENST00000560427 LIMK2P53671 638 aa12.67□□□□□ -0.38
NEDD8-208ENST00000560427 CLDN6P56747 220 aa12.67□□□□□ -0.38
NEDD8-208ENST00000560427 TUBB4BP68371 445 aa12.67□□□□□ -0.38
NEDD8-208ENST00000560427 LRRC8EQ6NSJ5 796 aa12.67□□□□□ -0.38
NEDD8-208ENST00000560427 DUS1LQ6P1R4 473 aaKnown RBP12.67□□□□□ -0.38
NEDD8-208ENST00000560427 ZNF549Q6P9A3 640 aa12.67□□□□□ -0.38
NEDD8-208ENST00000560427 NEK10Q6ZWH5 1172 aa12.67□□□□□ -0.38
NEDD8-208ENST00000560427 CCDC25Q86WR0 208 aa12.67□□□□□ -0.38
NEDD8-208ENST00000560427 OOSP2Q86WS3 158 aa12.67□□□□□ -0.38
NEDD8-208ENST00000560427 CARFQ8N187 725 aa12.67□□□□□ -0.38
NEDD8-208ENST00000560427 FOPNLQ96NB1 174 aa12.67□□□□□ -0.38
NEDD8-208ENST00000560427 CD180Q99467 661 aa12.67□□□□□ -0.38
NEDD8-208ENST00000560427 NUDT22Q9BRQ3 303 aa12.67□□□□□ -0.38
NEDD8-208ENST00000560427 AARSD1Q9BTE6 412 aaKnown RBP12.67□□□□□ -0.38
NEDD8-208ENST00000560427 TBC1D10AQ9BXI6 508 aa12.67□□□□□ -0.38
NEDD8-208ENST00000560427 TFB2MQ9H5Q4 396 aaKnown RBP12.67□□□□□ -0.38
NEDD8-208ENST00000560427 RDH14Q9HBH5 336 aa12.67□□□□□ -0.38
NEDD8-208ENST00000560427 TAS2R13Q9NYV9 303 aa12.67□□□□□ -0.38
NEDD8-208ENST00000560427 AKAP7Q9P0M2 348 aaPredicted RBP12.67□□□□□ -0.38
NEDD8-208ENST00000560427 ATXN7L1Q9ULK2 861 aaPredicted RBP12.67□□□□□ -0.38
NEDD8-208ENST00000560427 PCDHGA8Q9Y5G5 932 aa12.67□□□□□ -0.38
NEDD8-208ENST00000560427 RP1P56715 2156 aa12.67□□□□□ -0.38
NEDD8-208ENST00000560427 PTPRBP23467 1997 aa12.67□□□□□ -0.38
NEDD8-208ENST00000560427 PIKFYVEQ9Y2I7 2098 aa12.66□□□□□ -0.38
NEDD8-208ENST00000560427 IGHV5-10-1A0A0J9YXX1 117 aa12.66□□□□□ -0.38
NEDD8-208ENST00000560427 TCRBV9S1A1TA0A576 114 aa12.66□□□□□ -0.38
NEDD8-208ENST00000560427 TMEM8BA6NDV4 472 aa12.66□□□□□ -0.38
NEDD8-208ENST00000560427 OR5K3A6NET4 321 aa12.66□□□□□ -0.38
NEDD8-208ENST00000560427 C9P02748 559 aa12.66□□□□□ -0.38
NEDD8-208ENST00000560427 AHSGP02765 367 aa12.66□□□□□ -0.38
NEDD8-208ENST00000560427 ANKRD34CP0C6C1 535 aa12.66□□□□□ -0.38
NEDD8-208ENST00000560427 GABRB3P28472 473 aa12.66□□□□□ -0.38
NEDD8-208ENST00000560427 SSTR1P30872 391 aa12.66□□□□□ -0.38
NEDD8-208ENST00000560427 SHMT2P34897 504 aa12.66□□□□□ -0.38
NEDD8-208ENST00000560427 CCNFP41002 786 aa12.66□□□□□ -0.38
NEDD8-208ENST00000560427 PPM1FP49593 454 aaPredicted RBP12.66□□□□□ -0.38
NEDD8-208ENST00000560427 NAB1Q13506 487 aa12.66□□□□□ -0.38
NEDD8-208ENST00000560427 RTP5Q14D33 572 aa12.66□□□□□ -0.38
NEDD8-208ENST00000560427 BRD3Q15059 726 aa12.66□□□□□ -0.38
NEDD8-208ENST00000560427 NKAIN2Q5VXU1 208 aa12.66□□□□□ -0.38
NEDD8-208ENST00000560427 FAM45BPQ6NSW5 357 aa12.66□□□□□ -0.38
NEDD8-208ENST00000560427 CNSTQ6PJW8 725 aa12.66□□□□□ -0.38
NEDD8-208ENST00000560427 IGF2-ASQ6U949 168 aa12.66□□□□□ -0.38
NEDD8-208ENST00000560427 C3orf62Q6ZUJ4 267 aa12.66□□□□□ -0.38
NEDD8-208ENST00000560427 USP53Q70EK8 1073 aa12.66□□□□□ -0.38
NEDD8-208ENST00000560427 DCUN1D3Q8IWE4 304 aa12.66□□□□□ -0.38
NEDD8-208ENST00000560427 LSMEM2Q8N112 164 aa12.66□□□□□ -0.38
NEDD8-208ENST00000560427 EIF1ADQ8N9N8 165 aaKnown RBP12.66□□□□□ -0.38
NEDD8-208ENST00000560427 WDR36Q8NI36 951 aaKnown RBP12.66□□□□□ -0.38
NEDD8-208ENST00000560427 FAM45AQ8TCE6 357 aa12.66□□□□□ -0.38
NEDD8-208ENST00000560427 IFT81Q8WYA0 676 aa12.66□□□□□ -0.38
NEDD8-208ENST00000560427 GATA6Q92908 595 aa12.66□□□□□ -0.38
NEDD8-208ENST00000560427 ZDHHC12Q96GR4 267 aa12.66□□□□□ -0.38
NEDD8-208ENST00000560427 C9orf72Q96LT7 481 aa12.66□□□□□ -0.38
NEDD8-208ENST00000560427 FERD3LQ96RJ6 166 aa12.66□□□□□ -0.38
NEDD8-208ENST00000560427 CMKLR1Q99788 373 aa12.66□□□□□ -0.38
NEDD8-208ENST00000560427 TMEM121BQ9BXQ6 578 aaPredicted RBP12.66□□□□□ -0.38
NEDD8-208ENST00000560427 OGFRQ9NZT2 677 aa12.66□□□□□ -0.38
NEDD8-208ENST00000560427 DKK4Q9UBT3 224 aa12.66□□□□□ -0.38
NEDD8-208ENST00000560427 MED16Q9Y2X0 877 aa12.66□□□□□ -0.38
NEDD8-208ENST00000560427 DHRS7Q9Y394 339 aa12.66□□□□□ -0.38
NEDD8-208ENST00000560427 PRAMEF33A0A0G2JMD5 474 aa12.65□□□□□ -0.38
NEDD8-208ENST00000560427 FAM159BA6NKW6 160 aa12.65□□□□□ -0.38
NEDD8-208ENST00000560427 CASC3O15234 703 aaKnown RBP12.65□□□□□ -0.38
NEDD8-208ENST00000560427 DXOO77932 396 aaKnown RBP12.65□□□□□ -0.38
NEDD8-208ENST00000560427 ECHS1P30084 290 aa12.65□□□□□ -0.38
NEDD8-208ENST00000560427 PHBP35232 272 aa12.65□□□□□ -0.38
NEDD8-208ENST00000560427 LSSP48449 732 aa12.65□□□□□ -0.38
NEDD8-208ENST00000560427 CSE1LP55060 971 aaKnown RBP12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms