RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 WSCD2Q2TBF2 565 aa12.42□□□□□ -0.42
USP3-213ENST00000559711 DNAL1Q4LDG9 190 aa12.42□□□□□ -0.42
USP3-213ENST00000559711 LETMD1Q6P1Q0 360 aa12.42□□□□□ -0.42
USP3-213ENST00000559711 TRIM74Q86UV6 250 aa12.42□□□□□ -0.42
USP3-213ENST00000559711 SLC22A15Q8IZD6 547 aa12.42□□□□□ -0.42
USP3-213ENST00000559711 RP9Q8TA86 221 aaKnown RBP12.42□□□□□ -0.42
USP3-213ENST00000559711 SKA2Q8WVK7 121 aaPredicted RBP12.42□□□□□ -0.42
USP3-213ENST00000559711 HIST1H2AHQ96KK5 128 aa12.42□□□□□ -0.42
USP3-213ENST00000559711 GAS2L1Q99501 681 aaPredicted RBP12.42□□□□□ -0.42
USP3-213ENST00000559711 HIST1H2AJQ99878 128 aa12.42□□□□□ -0.42
USP3-213ENST00000559711 RTKNQ9BST9 563 aa12.42□□□□□ -0.42
USP3-213ENST00000559711 H2AFJQ9BTM1 129 aa12.42□□□□□ -0.42
USP3-213ENST00000559711 RASSF4Q9H2L5 321 aa12.42□□□□□ -0.42
USP3-213ENST00000559711 MMADHCQ9H3L0 296 aaPredicted RBP12.42□□□□□ -0.42
USP3-213ENST00000559711 PFDN4Q9NQP4 134 aa12.42□□□□□ -0.42
USP3-213ENST00000559711 FBXL12Q9NXK8 326 aa12.42□□□□□ -0.42
USP3-213ENST00000559711 SCML1Q9UN30 329 aa12.42□□□□□ -0.42
USP3-213ENST00000559711 G3BP2Q9UN86 482 aaKnown RBP12.42□□□□□ -0.42
USP3-213ENST00000559711 TIMM22Q9Y584 194 aa12.42□□□□□ -0.42
USP3-213ENST00000559711 F5P12259 2224 aa12.41□□□□□ -0.42
USP3-213ENST00000559711 LOC100653049A0A140TA62 436 aa12.41□□□□□ -0.42
USP3-213ENST00000559711 LIN7AO14910 233 aaPredicted RBP12.41□□□□□ -0.42
USP3-213ENST00000559711 PLRG1O43660 514 aaKnown RBP12.41□□□□□ -0.42
USP3-213ENST00000559711 CCNT2O60583 730 aaKnown RBP12.41□□□□□ -0.42
USP3-213ENST00000559711 KRT34O76011 436 aa12.41□□□□□ -0.42
USP3-213ENST00000559711 PRR35P0CG20 571 aa12.41□□□□□ -0.42
USP3-213ENST00000559711 HOXB2P14652 356 aa12.41□□□□□ -0.42
USP3-213ENST00000559711 ZNF8P17098 575 aaPredicted RBP12.41□□□□□ -0.42
USP3-213ENST00000559711 COL9A1P20849 921 aa12.41□□□□□ -0.42
USP3-213ENST00000559711 GDF5P43026 501 aa12.41□□□□□ -0.42
USP3-213ENST00000559711 PIK3CGP48736 1102 aa12.41□□□□□ -0.42
USP3-213ENST00000559711 RGS19P49795 217 aa12.41□□□□□ -0.42
USP3-213ENST00000559711 CCR3P51677 355 aa12.41□□□□□ -0.42
USP3-213ENST00000559711 IRX1P78414 480 aaPredicted RBP12.41□□□□□ -0.42
USP3-213ENST00000559711 PLOD1Q02809 727 aaPredicted RBP12.41□□□□□ -0.42
USP3-213ENST00000559711 GTF2H3Q13889 308 aa12.41□□□□□ -0.42
USP3-213ENST00000559711 SQLEQ14534 574 aa12.41□□□□□ -0.42
USP3-213ENST00000559711 ZXDCQ2QGD7 858 aaPredicted RBP12.41□□□□□ -0.42
USP3-213ENST00000559711 SYTL3Q4VX76 610 aa12.41□□□□□ -0.42
USP3-213ENST00000559711 XKR7Q5GH72 579 aa12.41□□□□□ -0.42
USP3-213ENST00000559711 MBOAT1Q6ZNC8 495 aa12.41□□□□□ -0.42
USP3-213ENST00000559711 CACUL1Q86Y37 369 aa12.41□□□□□ -0.42
USP3-213ENST00000559711 ZNF547Q8IVP9 402 aa12.41□□□□□ -0.42
USP3-213ENST00000559711 HOMEZQ8IX15 550 aa12.41□□□□□ -0.42
USP3-213ENST00000559711 LILRA3Q8N6C8 439 aaPredicted RBP12.41□□□□□ -0.42
USP3-213ENST00000559711 OR4F6Q8NGB9 312 aa12.41□□□□□ -0.42
USP3-213ENST00000559711 NTMT1Q9BV86 223 aa12.41□□□□□ -0.42
USP3-213ENST00000559711 PHF7Q9BWX1 381 aaPredicted RBP12.41□□□□□ -0.42
USP3-213ENST00000559711 C1QTNF2Q9BXJ5 285 aa12.41□□□□□ -0.42
USP3-213ENST00000559711 SLC32A1Q9H598 525 aa12.41□□□□□ -0.42
USP3-213ENST00000559711 UBE2ZQ9H832 354 aaPredicted RBP12.41□□□□□ -0.42
USP3-213ENST00000559711 ZFR2Q9UPR6 939 aaKnown RBP12.41□□□□□ -0.42
USP3-213ENST00000559711 ATP6AP2A0A1C7CYW4 349 aa12.4□□□□□ -0.42
USP3-213ENST00000559711 ATP6AP2O75787 350 aa12.4□□□□□ -0.42
USP3-213ENST00000559711 DNTTP04053 509 aa12.4□□□□□ -0.42
USP3-213ENST00000559711 LINC00032P0C843 101 aa12.4□□□□□ -0.42
USP3-213ENST00000559711 CD1EP15812 388 aa12.4□□□□□ -0.42
USP3-213ENST00000559711 EPB42P16452 691 aa12.4□□□□□ -0.42
USP3-213ENST00000559711 TRIM23P36406 574 aa12.4□□□□□ -0.42
USP3-213ENST00000559711 SLC6A12P48065 614 aa12.4□□□□□ -0.42
USP3-213ENST00000559711 PREPP48147 710 aa12.4□□□□□ -0.42
USP3-213ENST00000559711 CCNG1P51959 295 aa12.4□□□□□ -0.42
USP3-213ENST00000559711 RPS21P63220 83 aaKnown RBP12.4□□□□□ -0.42
USP3-213ENST00000559711 CYLC2Q14093 348 aaPredicted RBP12.4□□□□□ -0.42
USP3-213ENST00000559711 PTK2BQ14289 1009 aa12.4□□□□□ -0.42
USP3-213ENST00000559711 OGFOD2Q6N063 350 aa12.4□□□□□ -0.42
USP3-213ENST00000559711 XKR5Q6UX68 686 aa12.4□□□□□ -0.42
USP3-213ENST00000559711 RNF165Q6ZSG1 346 aa12.4□□□□□ -0.42
USP3-213ENST00000559711 LRRC70Q7Z2Q7 622 aa12.4□□□□□ -0.42
USP3-213ENST00000559711 MILR1Q7Z6M3 343 aa12.4□□□□□ -0.42
USP3-213ENST00000559711 TRAPPC5Q8IUR0 188 aa12.4□□□□□ -0.42
USP3-213ENST00000559711 DDIASQ8IXT1 998 aa12.4□□□□□ -0.42
USP3-213ENST00000559711 CDYL2Q8N8U2 506 aa12.4□□□□□ -0.42
USP3-213ENST00000559711 FAM13CQ8NE31 585 aa12.4□□□□□ -0.42
USP3-213ENST00000559711 METTL6Q8TCB7 284 aa12.4□□□□□ -0.42
USP3-213ENST00000559711 ATP6V1E2Q96A05 226 aa12.4□□□□□ -0.42
USP3-213ENST00000559711 MCUR1Q96AQ8 359 aa12.4□□□□□ -0.42
USP3-213ENST00000559711 FBXL8Q96CD0 374 aa12.4□□□□□ -0.42
USP3-213ENST00000559711 MSANTD3Q96H12 275 aa12.4□□□□□ -0.42
USP3-213ENST00000559711 MARK4Q96L34 752 aa12.4□□□□□ -0.42
USP3-213ENST00000559711 CDK15Q96Q40 435 aa12.4□□□□□ -0.42
USP3-213ENST00000559711 TEX101Q9BY14 249 aa12.4□□□□□ -0.42
USP3-213ENST00000559711 POLG2Q9UHN1 485 aa12.4□□□□□ -0.42
USP3-213ENST00000559711 BTRCQ9Y297 605 aa12.4□□□□□ -0.42
USP3-213ENST00000559711 ANGPTL3Q9Y5C1 460 aa12.4□□□□□ -0.42
USP3-213ENST00000559711 PTGDR2Q9Y5Y4 395 aa12.4□□□□□ -0.42
USP3-213ENST00000559711 CKAP5Q14008 2032 aa12.39□□□□□ -0.43
USP3-213ENST00000559711 PABPN1LA6NDY0 278 aaKnown RBP12.39□□□□□ -0.43
USP3-213ENST00000559711 SHISA7A6NL88 538 aa12.39□□□□□ -0.43
USP3-213ENST00000559711 ARHGEF33A8MVX0 844 aa12.39□□□□□ -0.43
USP3-213ENST00000559711 CHUKO15111 745 aa12.39□□□□□ -0.43
USP3-213ENST00000559711 KATNA1O75449 491 aa12.39□□□□□ -0.43
USP3-213ENST00000559711 POP7O75817 140 aaKnown RBP12.39□□□□□ -0.43
USP3-213ENST00000559711 CAPN1P07384 714 aa12.39□□□□□ -0.43
USP3-213ENST00000559711 ALDOCP09972 364 aaKnown RBP12.39□□□□□ -0.43
USP3-213ENST00000559711 EBLN1P0CF75 366 aa12.39□□□□□ -0.43
USP3-213ENST00000559711 LBPP18428 481 aa12.39□□□□□ -0.43
USP3-213ENST00000559711 PDHA2P29803 388 aa12.39□□□□□ -0.43
USP3-213ENST00000559711 PGM1P36871 562 aa12.39□□□□□ -0.43
USP3-213ENST00000559711 ACADVLP49748 655 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms