RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 NUDT4Q9NZJ9 180 aa12.65□□□□□ -0.38
LDLR-207ENST00000558013 AFF4Q9UHB7 1163 aaKnown RBP12.65□□□□□ -0.38
LDLR-207ENST00000558013 ADGRE2Q9UHX3 823 aa12.65□□□□□ -0.38
LDLR-207ENST00000558013 INVSQ9Y283 1065 aa12.65□□□□□ -0.38
LDLR-207ENST00000558013 PCDHGA8Q9Y5G5 932 aa12.65□□□□□ -0.38
LDLR-207ENST00000558013 PLXNA4Q9HCM2 1894 aa12.65□□□□□ -0.39
LDLR-207ENST00000558013 MAN1A2O60476 641 aa12.64□□□□□ -0.39
LDLR-207ENST00000558013 SEC22BO75396 215 aa12.64□□□□□ -0.39
LDLR-207ENST00000558013 PRKD3O94806 890 aa12.64□□□□□ -0.39
LDLR-207ENST00000558013 UMPSP11172 480 aa12.64□□□□□ -0.39
LDLR-207ENST00000558013 AGXTP21549 392 aa12.64□□□□□ -0.39
LDLR-207ENST00000558013 CACNG1Q06432 222 aa12.64□□□□□ -0.39
LDLR-207ENST00000558013 PWP1Q13610 501 aa12.64□□□□□ -0.39
LDLR-207ENST00000558013 PCBP2Q15366 365 aaKnown RBP eCLIP12.64□□□□□ -0.398e-6■■■■□ 24
LDLR-207ENST00000558013 ZXDCQ2QGD7 858 aaPredicted RBP12.64□□□□□ -0.39
LDLR-207ENST00000558013 LRRC73Q5JTD7 316 aa12.64□□□□□ -0.39
LDLR-207ENST00000558013 LRRC8DQ7L1W4 858 aa12.64□□□□□ -0.39
LDLR-207ENST00000558013 EFL1Q7Z2Z2 1120 aaKnown RBP12.64□□□□□ -0.39
LDLR-207ENST00000558013 TMCO2Q7Z6W1 182 aaPredicted RBP12.64□□□□□ -0.39
LDLR-207ENST00000558013 RBM23Q86U06 439 aaKnown RBP12.64□□□□□ -0.39
LDLR-207ENST00000558013 PROSER1Q86XN7 944 aa12.64□□□□□ -0.39
LDLR-207ENST00000558013 RGL4Q8IZJ4 473 aa12.64□□□□□ -0.39
LDLR-207ENST00000558013 RNF175Q8N4F7 328 aa12.64□□□□□ -0.39
LDLR-207ENST00000558013 FRS2Q8WU20 508 aa12.64□□□□□ -0.39
LDLR-207ENST00000558013 SLC22A17Q8WUG5 538 aa12.64□□□□□ -0.39
LDLR-207ENST00000558013 PIH1D2Q8WWB5 315 aa12.64□□□□□ -0.39
LDLR-207ENST00000558013 GFM2Q969S9 779 aaKnown RBP12.64□□□□□ -0.39
LDLR-207ENST00000558013 THAP11Q96EK4 314 aa12.64□□□□□ -0.39
LDLR-207ENST00000558013 PAIP1Q9H074 479 aaKnown RBP12.64□□□□□ -0.39
LDLR-207ENST00000558013 HPS4Q9NQG7 708 aa12.64□□□□□ -0.39
LDLR-207ENST00000558013 CASP8AP2Q9UKL3 1982 aa12.64□□□□□ -0.39
LDLR-207ENST00000558013 FZD6O60353 706 aa12.64□□□□□ -0.39
LDLR-207ENST00000558013 CST5P28325 142 aaPredicted RBP12.64□□□□□ -0.39
LDLR-207ENST00000558013 SULT1C3Q6IMI6 304 aa12.64□□□□□ -0.39
LDLR-207ENST00000558013 R3HCC1LQ7Z5L2 792 aaKnown RBP12.64□□□□□ -0.39
LDLR-207ENST00000558013 GALNT10Q86SR1 603 aa12.64□□□□□ -0.39
LDLR-207ENST00000558013 ZSWIM9Q86XI8 627 aa12.64□□□□□ -0.39
LDLR-207ENST00000558013 PDPRQ8NCN5 879 aa12.64□□□□□ -0.39
LDLR-207ENST00000558013 SCLYQ96I15 445 aa12.64□□□□□ -0.39
LDLR-207ENST00000558013 ING2Q9H160 280 aa12.64□□□□□ -0.39
LDLR-207ENST00000558013 LATS2Q9NRM7 1088 aa12.64□□□□□ -0.39
LDLR-207ENST00000558013 PKD2L2Q9NZM6 624 aa12.64□□□□□ -0.39
LDLR-207ENST00000558013 MAGEL2Q9UJ55 1249 aa12.64□□□□□ -0.39
LDLR-207ENST00000558013 FBXO10Q9UK96 956 aa12.64□□□□□ -0.39
LDLR-207ENST00000558013 ZNF490Q9ULM2 529 aaPredicted RBP12.64□□□□□ -0.39
LDLR-207ENST00000558013 VPS9D1Q9Y2B5 631 aa12.64□□□□□ -0.39
LDLR-207ENST00000558013 ANGPTL3Q9Y5C1 460 aa12.64□□□□□ -0.39
LDLR-207ENST00000558013 A0A1W2PQ45 241 aaPredicted RBP12.64□□□□□ -0.39
LDLR-207ENST00000558013 A0A1W2PQY0 241 aa12.64□□□□□ -0.39
LDLR-207ENST00000558013 TYW5A2RUC4 315 aaKnown RBP12.64□□□□□ -0.39
LDLR-207ENST00000558013 J3QRK9 145 aa12.64□□□□□ -0.39
LDLR-207ENST00000558013 CST1P01037 141 aa12.64□□□□□ -0.39
LDLR-207ENST00000558013 RAP2AP10114 183 aa12.64□□□□□ -0.39
LDLR-207ENST00000558013 FSHRP23945 695 aa12.64□□□□□ -0.39
LDLR-207ENST00000558013 MRPL19P49406 292 aaKnown RBP12.64□□□□□ -0.39
LDLR-207ENST00000558013 ALDH3A2P51648 485 aa12.64□□□□□ -0.39
LDLR-207ENST00000558013 MLLT10P55197 1068 aa12.64□□□□□ -0.39
LDLR-207ENST00000558013 SMAD3P84022 425 aaKnown RBP12.64□□□□□ -0.39
LDLR-207ENST00000558013 CHRNB3Q05901 458 aa12.64□□□□□ -0.39
LDLR-207ENST00000558013 DAG1Q14118 895 aa12.64□□□□□ -0.39
LDLR-207ENST00000558013 ARHGEF7Q14155 803 aa12.64□□□□□ -0.39
LDLR-207ENST00000558013 MAPKAPK3Q16644 382 aa12.64□□□□□ -0.39
LDLR-207ENST00000558013 CTU2Q2VPK5 515 aaKnown RBP12.64□□□□□ -0.39
LDLR-207ENST00000558013 CCNYL2Q5T2Q4 361 aa12.64□□□□□ -0.39
LDLR-207ENST00000558013 SPESP1Q6UW49 350 aa12.64□□□□□ -0.39
LDLR-207ENST00000558013 ANKS3Q6ZW76 656 aa12.64□□□□□ -0.39
LDLR-207ENST00000558013 ZNF548Q8NEK5 533 aaPredicted RBP12.64□□□□□ -0.39
LDLR-207ENST00000558013 PDZD8Q8NEN9 1154 aa12.64□□□□□ -0.39
LDLR-207ENST00000558013 PYCR2Q96C36 320 aa12.64□□□□□ -0.39
LDLR-207ENST00000558013 FBXL8Q96CD0 374 aa12.64□□□□□ -0.39
LDLR-207ENST00000558013 CSF3RQ99062 836 aa12.64□□□□□ -0.39
LDLR-207ENST00000558013 WWOXQ9NZC7 414 aa12.64□□□□□ -0.39
LDLR-207ENST00000558013 LRFN2Q9ULH4 789 aa12.64□□□□□ -0.39
LDLR-207ENST00000558013 DLGAP4Q9Y2H0 992 aa12.64□□□□□ -0.39
LDLR-207ENST00000558013 USP34Q70CQ2 3546 aa12.63□□□□□ -0.39
LDLR-207ENST00000558013 G3V2T6 193 aa12.63□□□□□ -0.39
LDLR-207ENST00000558013 H7C0S8 307 aa12.63□□□□□ -0.39
LDLR-207ENST00000558013 GSTA4O15217 222 aa12.63□□□□□ -0.39
LDLR-207ENST00000558013 LRATO95237 230 aa12.63□□□□□ -0.39
LDLR-207ENST00000558013 OTCP00480 354 aa12.63□□□□□ -0.39
LDLR-207ENST00000558013 THRBP10828 461 aa12.63□□□□□ -0.39
LDLR-207ENST00000558013 PSMD7P51665 324 aa12.63□□□□□ -0.39
LDLR-207ENST00000558013 NFATC2Q13469 925 aa12.63□□□□□ -0.39
LDLR-207ENST00000558013 CHRNA6Q15825 494 aa12.63□□□□□ -0.39
LDLR-207ENST00000558013 FAM98BQ52LJ0 330 aaKnown RBP12.63□□□□□ -0.39
LDLR-207ENST00000558013 XAF1Q6GPH4 301 aa12.63□□□□□ -0.39
LDLR-207ENST00000558013 ADAMTSL2Q86TH1 951 aa12.63□□□□□ -0.39
LDLR-207ENST00000558013 EGFL6Q8IUX8 553 aa12.63□□□□□ -0.39
LDLR-207ENST00000558013 AUTS2Q8WXX7 1259 aa12.63□□□□□ -0.39
LDLR-207ENST00000558013 SNX19Q92543 992 aa12.63□□□□□ -0.39
LDLR-207ENST00000558013 EGLN2Q96KS0 407 aa12.63□□□□□ -0.39
LDLR-207ENST00000558013 LHPPQ9H008 270 aa12.63□□□□□ -0.39
LDLR-207ENST00000558013 STARD7Q9NQZ5 370 aa12.63□□□□□ -0.39
LDLR-207ENST00000558013 ARNTLO00327 626 aa12.63□□□□□ -0.39
LDLR-207ENST00000558013 PFDN6O15212 129 aa12.63□□□□□ -0.39
LDLR-207ENST00000558013 RAD51BO15315 384 aa12.63□□□□□ -0.39
LDLR-207ENST00000558013 DEAF1O75398 565 aaPredicted RBP12.63□□□□□ -0.39
LDLR-207ENST00000558013 PRSS23O95084 383 aa12.63□□□□□ -0.39
LDLR-207ENST00000558013 PGRP06401 933 aa12.63□□□□□ -0.39
LDLR-207ENST00000558013 HTR1AP08908 422 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms